# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 1.04e-09 c.69.1.2 66765 2d5lA 706 4.81e-09 1fj2A 232 5.74e-09 c.69.1.14 34720 1ufoA 238 9.57e-09 c.69.1.27 99344 2z3zA 706 1.43e-08 1auoA 218 2.49e-08 c.69.1.14 34716 1u4nA 310 2.73e-08 c.69.1.2 113021 2i3dA 249 2.79e-08 1imjA 210 3.02e-08 c.69.1.23 71246 1l7aA 318 3.14e-08 c.69.1.25 77772 2o2gA 223 3.41e-08 1orvA 728 3.49e-08 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 3.66e-08 c.69.1.2 78306 2jbwA 386 3.69e-08 1gkkA 297 4.14e-08 c.69.1.2 65248 2hm7A 310 4.43e-08 1pv1A 299 5.25e-08 c.69.1.34 111639 3bdiA 207 5.34e-08 1wb4A 297 5.62e-08 c.69.1.2 120827 1jfrA 262 8.15e-08 c.69.1.16 34724 1mtzA 293 9.89e-08 c.69.1.7 79467 2pblA 262 1.40e-07 2hu5A 582 1.42e-07 b.69.7.2,c.69.1.33 136763,136764 2qm0A 275 1.56e-07 2r8bA 251 1.71e-07 2fukA 220 1.89e-07 1qe3A 489 2.02e-07 c.69.1.1 34630 1f0nA 285 2.09e-07 c.69.1.3 34636 1thgA 544 2.31e-07 c.69.1.17 34763 2b20A 403 3.06e-07 b.1.18.20,c.69.1.2 127685,127686 1zi8A 236 3.19e-07 1jjiA 311 3.31e-07 c.69.1.2 66766 1c7jA 489 3.65e-07 c.69.1.1 34631 1r88A 280 4.15e-07 c.69.1.3 97219 1ggvA 232 4.29e-07 c.69.1.9 34683 1cr6B 554 4.44e-07 c.69.1.11,c.108.1.2 34688,43338 1din 236 4.47e-07 1qtrA 317 4.51e-07 c.69.1.7 34660 1womA 271 4.72e-07 1p0iA 529 5.02e-07 c.69.1.1 93867 1c4xA 285 5.14e-07 c.69.1.10 34684 1u2eA 289 5.37e-07 1ea5A 537 6.25e-07 c.69.1.1 34592 1c7iA 489 6.42e-07 c.69.1.1 34632 1b6g 310 6.61e-07 2h7cA 542 6.66e-07 c.69.1.1 136207 1xfdA 723 6.91e-07 b.70.3.1,c.69.1.24 115251,115252 2hdwA 367 7.12e-07 3bxpA 277 7.42e-07 2qmqA 286 8.12e-07 2ogtA 498 8.39e-07 2ocgA 254 8.75e-07 3b5eA 223 9.17e-07 2uz0A 263 1.02e-06 1zd3A 555 1.09e-06 c.108.1.2,c.69.1.11 124930,124931 1h2xA 710 1.21e-06 b.69.7.1,c.69.1.4 76598,76599 1dqzA 280 1.26e-06 c.69.1.3 34638 1ede 310 1.27e-06 2o7rA 338 1.28e-06 3c5vA 316 1.58e-06 1vlqA 337 1.63e-06 c.69.1.25 108848 1o6gA 710 1.82e-06 b.69.7.1,c.69.1.4 81087,81088 1thg 544 1.84e-06 1dqyA 283 2.03e-06 c.69.1.3 34640 1xqwA 293 2.11e-06 1b6gA 310 2.45e-06 c.69.1.8 34661 3bixA 574 2.61e-06 1aqlA 532 2.69e-06 c.69.1.1 34627 1bn7A 294 2.72e-06 c.69.1.8 34677 1a88A 275 2.73e-06 c.69.1.12 34707 3c8dA 403 2.77e-06 1azwA 313 2.82e-06 c.69.1.7 34658 2bklA 695 3.21e-06 1m33A 258 3.27e-06 c.69.1.26 78514 1cqwA 295 3.29e-06 c.69.1.8 34679 1cv2A 296 3.54e-06 c.69.1.8 34680 1tqhA 247 3.59e-06 c.69.1.29 107225 1jkmA 358 3.69e-06 c.69.1.2 34633 1bn6A 294 3.79e-06 c.69.1.8 34678 3bwxA 285 4.23e-06 1xklA 273 4.33e-06 c.69.1.20 115410 1j1iA 296 4.35e-06 c.69.1.10 83977 1zoiA 276 5.22e-06 1llfA 534 5.32e-06 c.69.1.17 78094 1va4A 279 5.39e-06 c.69.1.12 108458 1q0rA 298 5.48e-06 c.69.1.28 95508 1uk8A 282 5.72e-06 c.69.1.10 107907 2bceA 585 6.18e-06 c.69.1.1 34625 1r1dA 247 6.48e-06 c.69.1.29 96813 3bf7A 255 6.81e-06 1e8nA 710 6.90e-06 b.69.7.1,c.69.1.4 27675,34643 1yasA 257 7.01e-06 c.69.1.20 34801 2e3jA 356 7.13e-06 1ju3A 583 9.98e-06 b.18.1.13,c.69.1.21 67300,67301 1h2wA 710 9.99e-06 b.69.7.1,c.69.1.4 76596,76597 1brt 277 1.04e-05 1ehyA 294 1.04e-05 c.69.1.11 34693 1broA 277 1.07e-05 c.69.1.12 34700 1hkhA 279 1.09e-05 c.69.1.12 90628 1r3dA 264 1.11e-05 c.69.1.35 111680 1ys1X 320 1.20e-05 1ukcA 522 1.21e-05 c.69.1.17 107911 1qj4A 257 1.34e-05 c.69.1.20 34796 1yr2A 741 1.34e-05 1dx4A 586 1.37e-05 c.69.1.1 34622 2cjpA 328 1.37e-05 1cleA 534 1.38e-05 c.69.1.17 34771 1y37A 304 1.39e-05 2pujA 286 1.45e-05 1wm1A 317 1.74e-05 c.69.1.7 109405 2psdA 318 1.77e-05 2og1A 286 1.99e-05 2puhA 286 2.15e-05 1a8sA 273 2.37e-05 c.69.1.12 34710 1brtA 277 2.64e-05 c.69.1.12 34699 2fx5A 258 2.65e-05 2pl5A 366 2.81e-05 2yysA 286 3.07e-05 2rhwA 283 3.19e-05 1mpxA 615 3.40e-05 b.18.1.13,c.69.1.21 85041,85042 2o2iA 300 3.57e-05 2d80A 318 3.72e-05 1a8uA 277 3.79e-05 c.69.1.12 34703 2rauA 354 4.13e-05 2gzsA 278 4.49e-05 1cvlA 319 4.75e-05 c.69.1.18 34786 3bdvA 191 4.83e-05 2qruA 274 4.90e-05 1a8qA 274 4.94e-05 c.69.1.12 34702 1iz7A 295 5.07e-05 c.69.1.8 76982 2bce 581 5.07e-05 1tahA 318 5.16e-05 c.69.1.18 34775 2qvbA 297 5.66e-05 1mj5A 302 6.67e-05 c.69.1.8 91285 2qjwA 176 7.32e-05 1qfmA 710 0.000127 b.69.7.1,c.69.1.4 27673,34641 2d81A 318 0.000138 1mnaA 298 0.000140 c.69.1.22 79322 1vkhA 273 0.000157 c.69.1.32 108662 2b61A 377 0.000174 1cvl 319 0.000248 1qo7A 394 0.000331 c.69.1.11 34697 1hlgA 371 0.000500 c.69.1.6 34656 1ispA 181 0.000634 c.69.1.18 76778 1kezA 300 0.000654 c.69.1.22 68546 1mo2A 294 0.000686 c.69.1.22 79331 1k8qA 377 0.000706 c.69.1.6 72177 1thtA 305 0.000747 c.69.1.13 34711 1i6wA 181 0.000978 c.69.1.18 61859 2qs9A 194 0.001199 1qlwA 328 0.001238 c.69.1.15 34722 1gpl 432 0.001438 1bu8A 452 0.001447 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 0.002390 c.69.1.17 34726 2q0xA 335 0.004096 1hplA 449 0.006158 b.12.1.2,c.69.1.19 23639,34787 2veoA 441 0.006804 1tca 317 0.009668 1ycdA 243 0.02450 1lnsA 763 0.02665 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1pjaA 302 0.05689 c.69.1.13 94758 1tib 269 0.06544 1uxoA 192 0.07165 c.69.1.31 108121 1ivyA 452 0.07713 c.69.1.5 34654 1gt6A 269 0.1124 c.69.1.17 76342 2hfkA 319 0.1916 2bjhA 260 0.3124 1uswA 260 0.3232 c.69.1.17 99895 1tibA 269 0.3449 c.69.1.17 34738 1ei9A 279 0.3696 c.69.1.13 34713 1ac5 483 0.4262 1lgyA 269 0.5454 c.69.1.17 34758 1uwcA 261 0.5864 c.69.1.17 100101 2cb9A 244 0.5898 3tglA 269 0.7515 c.69.1.17 34733 2oryA 346 0.8733 2dsnA 387 0.9101 1ku0A 388 1.205 c.69.1.18 72994 2z5gA 387 2.211 2qvpA 275 3.767 1jmkC 230 4.060 c.69.1.22 71747 2px6A 316 4.343 2bz1A 196 6.546 c.144.1.1 129532 1ac5A 483 7.729 c.69.1.5 34653 1whtA 256 7.958 c.69.1.5 34646 1j8mF 297 8.123 a.24.13.1,c.37.1.10 62742,62743 1bcsA 263 8.224 c.69.1.5 34647 1whsA 255 11.27 c.69.1.5 34649 2i7cA 283 16.32 1ic6A 279 17.14 c.41.1.1 62257 2ctc 307 17.73 1z5rA 306 23.14 c.56.5.1 124488 1bavA 309 24.95 c.56.5.1 33806 2fcrA 173 26.91 c.23.5.1 31151 1e8cA 498 28.44 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3cdxA 354 28.92 1drwA 273 28.92 c.2.1.3,d.81.1.3 30057,39972 2b81A 323 31.18 1g66A 207 33.31 c.69.1.30 31329 1v2dA 381 34.53 c.67.1.1 108281 2cduA 452 34.74 2yvuA 186 34.85 1obrA 326 34.87 c.56.5.2 33828 3b2yA 275 39.52 2f9iB 285 40.20 1mioA 534 40.39 c.92.2.3 35601 1kbjA 412 41.34 c.1.4.1 72280 1eiwA 111 41.62 c.23.3.1 31130 2jfnA 285 42.09 7a3hA 303 43.62 c.1.8.3 28817 1fc4A 401 44.08 c.67.1.4 59760 2bo9A 308 46.72 c.56.5.1 128897 1nhsA 447 47.18 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1qhaA 917 47.50 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 1pydA 556 49.31 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1j9eA 147 50.08 c.23.5.1 62756 1owqA 361 54.26 c.1.8.5,d.26.3.1 104041,104042 3c6kA 381 54.69 3c8uA 208 54.73 1gs5A 258 55.20 c.73.1.2 70395 3c3pA 210 55.68 1h0hA 977 59.11 b.52.2.2,c.81.1.1 76435,76436 1l1eA 287 59.17 c.66.1.18 73454 2gzmA 267 59.77 1d7yA 408 60.68 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2ax4A 198 61.82 1a2oA 349 62.30 c.23.1.1,c.40.1.1 31120,32479 2hx1A 284 62.54 2nxfA 322 62.68 2g1pA 278 62.73 1to6A 371 63.02 c.141.1.1 107170 1eceA 358 65.47 c.1.8.3 28813 2pezA 179 67.17 2qj8A 332 70.11 1vmaA 306 70.20 a.24.13.1,c.37.1.10 108887,108888 1x7yB 342 73.12 c.36.1.7,c.48.1.2 114945,114946 1gv4A 528 73.53 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2jgdA 933 73.81 2jg2A 422 73.91 1p9lA 245 74.19 c.2.1.3,d.81.1.3 94393,94394 2p8eA 307 74.35 1e20A 209 74.81 c.34.1.1 31759 2jfgA 445 76.14 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2btoA 473 77.49 1jffB 445 77.62 c.32.1.1,d.79.2.1 62934,62935 2i71A 400 78.38 1sglA 209 79.44 d.124.1.1 105536 1y9zA 441 83.11 2oycA 306 83.73 1m6iA 493 84.92 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1q1rA 431 85.87 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1tvnA 293 86.34 c.1.8.3 119360 1mjfA 281 87.01 c.66.1.17 79198 1ao0A 459 87.68 c.61.1.1,d.153.1.1 34049,41816 1egzA 291 88.57 c.1.8.3 28828