# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 2.20e-09 c.69.1.2 66765 2i3dA 249 4.47e-09 1fj2A 232 5.32e-09 c.69.1.14 34720 2d5lA 706 7.43e-09 1ufoA 238 7.59e-09 c.69.1.27 99344 2o2gA 223 1.01e-08 1auoA 218 1.02e-08 c.69.1.14 34716 2jbwA 386 1.10e-08 1jfrA 262 1.57e-08 c.69.1.16 34724 1l7aA 318 1.95e-08 c.69.1.25 77772 1imjA 210 2.44e-08 c.69.1.23 71246 3bdiA 207 3.39e-08 2z3zA 706 3.57e-08 1wb4A 297 4.27e-08 c.69.1.2 120827 1gkkA 297 4.72e-08 c.69.1.2 65248 2hu5A 582 4.77e-08 b.69.7.2,c.69.1.33 136763,136764 1r88A 280 5.03e-08 c.69.1.3 97219 1orvA 728 5.32e-08 b.70.3.1,c.69.1.24 87354,87355 1u4nA 310 6.08e-08 c.69.1.2 113021 1lzlA 323 6.15e-08 c.69.1.2 78306 1mtzA 293 8.30e-08 c.69.1.7 79467 1zi8A 236 9.14e-08 2hm7A 310 9.93e-08 2fukA 220 1.12e-07 2r8bA 251 1.41e-07 2pblA 262 1.52e-07 1pv1A 299 1.76e-07 c.69.1.34 111639 1f0nA 285 1.81e-07 c.69.1.3 34636 1c4xA 285 1.93e-07 c.69.1.10 34684 2hdwA 367 2.27e-07 1qe3A 489 2.49e-07 c.69.1.1 34630 1b6g 310 2.81e-07 1p0iA 529 3.38e-07 c.69.1.1 93867 1qtrA 317 3.40e-07 c.69.1.7 34660 1jjiA 311 3.46e-07 c.69.1.2 66766 1h2xA 710 3.62e-07 b.69.7.1,c.69.1.4 76598,76599 1ea5A 537 4.12e-07 c.69.1.1 34592 1u2eA 289 4.68e-07 2ocgA 254 4.72e-07 1ggvA 232 4.72e-07 c.69.1.9 34683 3bixA 574 6.00e-07 1b6gA 310 6.13e-07 c.69.1.8 34661 1dqzA 280 6.18e-07 c.69.1.3 34638 1o6gA 710 6.29e-07 b.69.7.1,c.69.1.4 81087,81088 1c7iA 489 6.42e-07 c.69.1.1 34632 2qm0A 275 6.62e-07 2h7cA 542 6.69e-07 c.69.1.1 136207 1cr6B 554 7.43e-07 c.69.1.11,c.108.1.2 34688,43338 1tqhA 247 7.52e-07 c.69.1.29 107225 1thgA 544 7.76e-07 c.69.1.17 34763 2ogtA 498 7.96e-07 1din 236 8.20e-07 1ede 310 8.32e-07 1womA 271 8.39e-07 1j1iA 296 8.74e-07 c.69.1.10 83977 1c7jA 489 1.01e-06 c.69.1.1 34631 2b20A 403 1.11e-06 b.1.18.20,c.69.1.2 127685,127686 1xfdA 723 1.13e-06 b.70.3.1,c.69.1.24 115251,115252 1zoiA 276 1.16e-06 1azwA 313 1.17e-06 c.69.1.7 34658 1aqlA 532 1.17e-06 c.69.1.1 34627 1broA 277 1.26e-06 c.69.1.12 34700 1xqwA 293 1.33e-06 1dqyA 283 1.38e-06 c.69.1.3 34640 2qmqA 286 1.39e-06 1a88A 275 1.42e-06 c.69.1.12 34707 1thg 544 1.55e-06 3bxpA 277 1.68e-06 3b5eA 223 1.74e-06 1uk8A 282 1.77e-06 c.69.1.10 107907 1vlqA 337 1.96e-06 c.69.1.25 108848 2o7rA 338 2.07e-06 1brt 277 2.16e-06 2bceA 585 2.23e-06 c.69.1.1 34625 1va4A 279 2.29e-06 c.69.1.12 108458 1jkmA 358 2.30e-06 c.69.1.2 34633 2bklA 695 2.52e-06 1zd3A 555 2.83e-06 c.108.1.2,c.69.1.11 124930,124931 1e8nA 710 3.08e-06 b.69.7.1,c.69.1.4 27675,34643 1r1dA 247 3.09e-06 c.69.1.29 96813 1hkhA 279 3.32e-06 c.69.1.12 90628 3c5vA 316 3.62e-06 1cqwA 295 4.26e-06 c.69.1.8 34679 1cv2A 296 4.31e-06 c.69.1.8 34680 3c8dA 403 4.34e-06 1yr2A 741 4.36e-06 1h2wA 710 4.49e-06 b.69.7.1,c.69.1.4 76596,76597 1xklA 273 4.60e-06 c.69.1.20 115410 1bn7A 294 4.85e-06 c.69.1.8 34677 1bn6A 294 5.15e-06 c.69.1.8 34678 1llfA 534 5.19e-06 c.69.1.17 78094 1q0rA 298 5.23e-06 c.69.1.28 95508 1a8uA 277 5.92e-06 c.69.1.12 34703 2og1A 286 6.03e-06 1brtA 277 6.12e-06 c.69.1.12 34699 2e3jA 356 6.59e-06 1a8sA 273 6.68e-06 c.69.1.12 34710 1m33A 258 6.81e-06 c.69.1.26 78514 1wm1A 317 7.03e-06 c.69.1.7 109405 1yasA 257 7.43e-06 c.69.1.20 34801 2uz0A 263 7.43e-06 1ehyA 294 8.17e-06 c.69.1.11 34693 2pujA 286 8.30e-06 2puhA 286 8.60e-06 3bwxA 285 1.19e-05 2psdA 318 1.21e-05 1iz7A 295 1.31e-05 c.69.1.8 76982 2fx5A 258 1.32e-05 1cleA 534 1.46e-05 c.69.1.17 34771 2cjpA 328 1.50e-05 3bf7A 255 1.62e-05 2rhwA 283 1.70e-05 1mj5A 302 1.86e-05 c.69.1.8 91285 1qj4A 257 1.94e-05 c.69.1.20 34796 1ju3A 583 1.98e-05 b.18.1.13,c.69.1.21 67300,67301 2rauA 354 1.99e-05 1ukcA 522 2.08e-05 c.69.1.17 107911 2qjwA 176 2.10e-05 1a8qA 274 2.51e-05 c.69.1.12 34702 1r3dA 264 2.57e-05 c.69.1.35 111680 1dx4A 586 2.58e-05 c.69.1.1 34622 1y37A 304 2.72e-05 2o2iA 300 2.88e-05 2bce 581 2.92e-05 2yysA 286 3.74e-05 1mpxA 615 3.96e-05 b.18.1.13,c.69.1.21 85041,85042 2d80A 318 5.40e-05 1ys1X 320 5.76e-05 1qfmA 710 6.50e-05 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 8.02e-05 1qo7A 394 9.30e-05 c.69.1.11 34697 1cvlA 319 9.30e-05 c.69.1.18 34786 2qvbA 297 9.57e-05 2pl5A 366 0.000114 2d81A 318 0.000129 1vkhA 273 0.000137 c.69.1.32 108662 1k8qA 377 0.000154 c.69.1.6 72177 2gzsA 278 0.000208 1tahA 318 0.000235 c.69.1.18 34775 1cvl 319 0.000382 1mnaA 298 0.000439 c.69.1.22 79322 1qlwA 328 0.000443 c.69.1.15 34722 1hlgA 371 0.000449 c.69.1.6 34656 2b61A 377 0.000572 2veoA 441 0.000587 1kezA 300 0.000758 c.69.1.22 68546 2qs9A 194 0.000925 3bdvA 191 0.001685 1i6wA 181 0.001698 c.69.1.18 61859 1mo2A 294 0.001781 c.69.1.22 79331 1ispA 181 0.001958 c.69.1.18 76778 1lnsA 763 0.001964 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1tcaA 317 0.002563 c.69.1.17 34726 1thtA 305 0.002745 c.69.1.13 34711 1bu8A 452 0.003933 b.12.1.2,c.69.1.19 23647,34795 1tca 317 0.004242 1gpl 432 0.004644 1ycdA 243 0.006382 2q0xA 335 0.02174 1hplA 449 0.02421 b.12.1.2,c.69.1.19 23639,34787 1tib 269 0.07150 1ivyA 452 0.07611 c.69.1.5 34654 1uxoA 192 0.1148 c.69.1.31 108121 1gt6A 269 0.1698 c.69.1.17 76342 1tibA 269 0.2916 c.69.1.17 34738 1pjaA 302 0.3183 c.69.1.13 94758 1uswA 260 0.3274 c.69.1.17 99895 1uwcA 261 0.4336 c.69.1.17 100101 3tglA 269 0.5212 c.69.1.17 34733 1ei9A 279 0.5321 c.69.1.13 34713 2bjhA 260 0.6885 2oryA 346 1.241 1ac5 483 1.594 1lgyA 269 1.796 c.69.1.17 34758 2cb9A 244 1.928 1ku0A 388 2.544 c.69.1.18 72994 1whtA 256 2.790 c.69.1.5 34646 1whsA 255 2.810 c.69.1.5 34649 2hfkA 319 2.883 1bcsA 263 3.200 c.69.1.5 34647 1ic6A 279 3.875 c.41.1.1 62257 2dsnA 387 4.223 2qvpA 275 4.993 1j8mF 297 6.411 a.24.13.1,c.37.1.10 62742,62743 2px6A 316 9.404 1e8cA 498 10.10 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2z5gA 387 11.65 1eiwA 111 14.92 c.23.3.1 31130 1eudA 311 15.77 c.2.1.8,c.23.4.1 30312,31140 1t9bA 677 16.28 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1jmkC 230 16.39 c.69.1.22 71747 2bz1A 196 18.18 c.144.1.1 129532 1h0hA 977 18.28 b.52.2.2,c.81.1.1 76435,76436 3cdxA 354 20.90 2pqmA 343 26.38 1drwA 273 28.36 c.2.1.3,d.81.1.3 30057,39972 1pydA 556 29.25 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2i7cA 283 30.13 3b2yA 275 30.76 2ag6A 314 31.10 1ybhA 590 33.62 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1ac5A 483 35.82 c.69.1.5 34653 1v7pC 200 38.25 c.62.1.1 108408 2nxfA 322 42.59 1j9eA 147 42.90 c.23.5.1 62756 1qpbA 563 42.95 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2pgnA 589 46.52 2csuA 457 47.29 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1g66A 207 48.71 c.69.1.30 31329 1kbjA 412 49.01 c.1.4.1 72280 1edg 380 49.76 1p9lA 245 51.00 c.2.1.3,d.81.1.3 94393,94394 3c8uA 208 52.79 1poxA 585 54.15 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ceoA 343 55.73 c.1.8.3 28808 1gci 269 57.74 2ctc 307 59.41 1bu6O 501 63.48 c.55.1.4,c.55.1.4 33499,33500 2p8eA 307 65.25 2g1pA 278 65.51 7a3hA 303 67.86 c.1.8.3 28817 1f4pA 147 68.89 c.23.5.1 59651 2jgdA 933 71.00 1d3gA 367 71.70 c.1.4.1 28600 1sh7A 284 72.25 1sq5A 308 72.56 c.37.1.6 105882 2dpmA 284 72.78 c.66.1.28 34246 1jscA 630 73.32 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2fywA 267 74.40 c.135.1.1 134408 1vmaA 306 74.68 a.24.13.1,c.37.1.10 108887,108888 1ve1A 304 76.29 c.79.1.1 120007 1bfd 528 76.90 1ozhA 566 76.94 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2ez9A 603 77.48 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2fcrA 173 78.40 c.23.5.1 31151 1cz1A 394 80.19 c.1.8.3 28839 1oxwA 373 80.40 c.19.1.3 87539 2ax4A 198 80.55 2czqA 205 81.39 1rttA 193 82.14 c.23.5.4 105098 2driA 271 83.19 c.93.1.1 35637 1vl6A 388 83.25 c.2.1.7,c.58.1.3 108724,108725 2dwcA 433 87.01 5nul 138 87.39 1h5vA 304 88.24 c.1.8.3 70898 1jffB 445 88.45 c.32.1.1,d.79.2.1 62934,62935 1b1cA 181 89.59 c.23.5.2 31212