# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.25e-20 c.69.1.25 77772 1vlqA 337 6.08e-20 c.69.1.25 108848 2z3zA 706 3.50e-19 1u4nA 310 3.65e-19 c.69.1.2 113021 1lzlA 323 3.81e-19 c.69.1.2 78306 1u2eA 289 5.08e-19 1jkmA 358 5.99e-19 c.69.1.2 34633 2hu5A 582 6.83e-19 b.69.7.2,c.69.1.33 136763,136764 2jbwA 386 7.01e-19 2d5lA 706 7.34e-19 2hdwA 367 9.44e-19 1jfrA 262 9.82e-19 c.69.1.16 34724 2og1A 286 1.41e-18 2pujA 286 2.01e-18 1b6gA 310 2.03e-18 c.69.1.8 34661 1zd3A 555 2.30e-18 c.108.1.2,c.69.1.11 124930,124931 1orvA 728 3.00e-18 b.70.3.1,c.69.1.24 87354,87355 2rhwA 283 3.05e-18 2puhA 286 3.42e-18 1b6g 310 3.55e-18 2uz0A 263 4.22e-18 2fx5A 258 4.74e-18 2o7rA 338 5.21e-18 3b5eA 223 5.57e-18 1c4xA 285 5.82e-18 c.69.1.10 34684 2qm0A 275 5.93e-18 1h2wA 710 6.02e-18 b.69.7.1,c.69.1.4 76596,76597 2b61A 377 6.14e-18 1bn7A 294 6.29e-18 c.69.1.8 34677 1fj2A 232 6.41e-18 c.69.1.14 34720 1vkhA 273 6.88e-18 c.69.1.32 108662 2r11A 306 7.00e-18 1q0rA 298 8.27e-18 c.69.1.28 95508 1uk8A 282 9.69e-18 c.69.1.10 107907 3bdiA 207 1.10e-17 2hm7A 310 1.15e-17 1auoA 218 1.15e-17 c.69.1.14 34716 1jjiA 311 1.17e-17 c.69.1.2 66766 1hlgA 371 1.21e-17 c.69.1.6 34656 1azwA 313 1.22e-17 c.69.1.7 34658 2o2gA 223 1.30e-17 2bklA 695 1.56e-17 1zi8A 236 1.60e-17 1k8qA 377 1.68e-17 c.69.1.6 72177 1wb4A 297 1.77e-17 c.69.1.2 120827 1wm1A 317 1.87e-17 c.69.1.7 109405 1zoiA 276 1.88e-17 1din 236 2.04e-17 2pl5A 366 2.08e-17 1jjfA 268 2.20e-17 c.69.1.2 66765 2i3dA 249 2.55e-17 1womA 271 2.60e-17 2e3jA 356 2.64e-17 2fukA 220 2.77e-17 3c8dA 403 2.94e-17 2qmqA 286 2.99e-17 1o6gA 710 3.03e-17 b.69.7.1,c.69.1.4 81087,81088 3bxpA 277 3.23e-17 2b20A 403 3.42e-17 b.1.18.20,c.69.1.2 127685,127686 2ocgA 254 3.76e-17 1brt 277 3.78e-17 1ufoA 238 3.87e-17 c.69.1.27 99344 1mj5A 302 3.99e-17 c.69.1.8 91285 2qruA 274 4.15e-17 2r8bA 251 4.15e-17 1j1iA 296 4.16e-17 c.69.1.10 83977 1mtzA 293 4.88e-17 c.69.1.7 79467 1imjA 210 5.36e-17 c.69.1.23 71246 2cjpA 328 6.43e-17 2veoA 441 6.50e-17 1xqwA 293 6.58e-17 3bf7A 255 7.69e-17 1a8qA 274 8.05e-17 c.69.1.12 34702 1hkhA 279 8.83e-17 c.69.1.12 90628 1a8sA 273 9.83e-17 c.69.1.12 34710 1dqzA 280 1.03e-16 c.69.1.3 34638 1va4A 279 1.17e-16 c.69.1.12 108458 1y37A 304 1.23e-16 1brtA 277 1.30e-16 c.69.1.12 34699 1xklA 273 1.31e-16 c.69.1.20 115410 2o2iA 300 1.34e-16 1mpxA 615 1.40e-16 b.18.1.13,c.69.1.21 85041,85042 1f0nA 285 1.52e-16 c.69.1.3 34636 3bwxA 285 1.74e-16 2qvbA 297 1.75e-16 1ehyA 294 1.90e-16 c.69.1.11 34693 1lnsA 763 1.95e-16 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1r88A 280 2.01e-16 c.69.1.3 97219 1pv1A 299 2.24e-16 c.69.1.34 111639 3c5vA 316 2.28e-16 2pblA 262 2.28e-16 1qj4A 257 2.57e-16 c.69.1.20 34796 2psdA 318 3.14e-16 1tqhA 247 3.23e-16 c.69.1.29 107225 1qo7A 394 3.78e-16 c.69.1.11 34697 1yr2A 741 4.70e-16 1r1dA 247 4.89e-16 c.69.1.29 96813 2yysA 286 5.34e-16 1m33A 258 9.01e-16 c.69.1.26 78514 2gzsA 278 1.19e-15 1tcaA 317 1.54e-15 c.69.1.17 34726 1ju3A 583 2.37e-15 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 4.37e-15 1pjaA 302 1.28e-14 c.69.1.13 94758 1qlwA 328 1.60e-14 c.69.1.15 34722 1cvlA 319 1.66e-14 c.69.1.18 34786 1ycdA 243 2.57e-14 2ogtA 498 6.09e-14 1tca 317 6.25e-14 1r3dA 264 6.54e-14 c.69.1.35 111680 2q0xA 335 9.61e-14 2rauA 354 1.23e-13 2qjwA 176 1.46e-13 1mnaA 298 1.54e-13 c.69.1.22 79322 1qe3A 489 1.70e-13 c.69.1.1 34630 3bdvA 191 1.90e-13 1ukcA 522 3.75e-13 c.69.1.17 107911 1ea5A 537 6.24e-13 c.69.1.1 34592 1ispA 181 7.73e-13 c.69.1.18 76778 1ei9A 279 8.28e-13 c.69.1.13 34713 1llfA 534 8.83e-13 c.69.1.17 78094 1p0iA 529 1.46e-12 c.69.1.1 93867 1ys1X 320 2.09e-12 1cvl 319 2.89e-12 1thgA 544 4.00e-12 c.69.1.17 34763 2qs9A 194 6.95e-12 1uxoA 192 1.73e-11 c.69.1.31 108121 2bceA 585 2.01e-11 c.69.1.1 34625 3bixA 574 2.11e-11 2px6A 316 2.14e-11 1bu8A 452 2.29e-11 b.12.1.2,c.69.1.19 23647,34795 1jmkC 230 2.36e-11 c.69.1.22 71747 1thg 544 2.62e-11 2h7cA 542 2.86e-11 c.69.1.1 136207 1hplA 449 3.77e-11 b.12.1.2,c.69.1.19 23639,34787 2bce 581 8.16e-11 2cb9A 244 1.15e-10 1thtA 305 5.15e-10 c.69.1.13 34711 1ivyA 452 3.50e-09 c.69.1.5 34654 2dsnA 387 8.53e-08 1ac5A 483 1.98e-06 c.69.1.5 34653 2z5gA 387 1.22e-05 1ku0A 388 2.20e-05 c.69.1.18 72994 1uwcA 261 4.81e-05 c.69.1.17 100101 1tib 269 6.03e-05 2d80A 318 9.63e-05 1cex 214 9.83e-05 1g66A 207 0.000134 c.69.1.30 31329 1whsA 255 0.000253 c.69.1.5 34649 1cexA 214 0.000563 c.69.1.30 31285 1tibA 269 0.000593 c.69.1.17 34738 2d81A 318 0.000774 3tglA 269 0.000892 c.69.1.17 34733 2czqA 205 0.001415 2oryA 346 0.01254 1edgA 380 0.4131 c.1.8.3 28807 1whsB 153 0.4711 2q7xA 326 4.274 1o9gA 250 5.523 c.66.1.29 86692 2df8A 325 5.960 1ooeA 236 6.410 c.2.1.2 87196 1moq 368 6.875 2j3hA 345 6.937 1fjhA 257 7.148 c.2.1.2 29870 1f0kA 364 7.712 c.87.1.2 35465 2gruA 368 8.269 1v4vA 376 9.129 c.87.1.3 100313 2ze7A 253 9.786 4uagA 437 10.49 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2c2nA 339 11.69 2qmoA 220 11.81 1p3dA 475 12.09 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1x1tA 260 12.31 c.2.1.2 121597 2nm0A 253 12.73 1iirA 415 12.82 c.87.1.5 62453 1xgkA 352 13.49 c.2.1.2 115286 2p91A 285 14.50 2jfgA 445 15.00 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2deoA 230 15.26 2vc7A 314 15.48 2ppwA 216 15.54 2yvuA 186 15.86 2cb0A 333 16.36 1bf6A 291 16.68 c.1.9.3 29065 2bkaA 242 17.04 c.2.1.2 128666 1rrmA 386 17.07 e.22.1.2 105081 3c86A 328 17.34 1oxwA 373 17.60 c.19.1.3 87539 2jepA 395 17.77 3b55A 451 17.91 2e18A 257 18.57 2gasA 307 18.60 1ijbA 202 18.79 c.62.1.1 71229 2d4wA 504 19.44 2z1mA 345 19.99 1uluA 261 20.80 c.2.1.2 113292 2qt1A 207 21.20 1e8cA 498 22.32 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1tcvA 287 22.43 1y5mA 276 22.74 c.2.1.2 122645 2f5xA 312 23.03 1kpgA 287 23.19 c.66.1.18 68735 2h1yA 321 23.37 1ml4A 308 23.84 c.78.1.1,c.78.1.1 79255,79256 2h7mA 269 23.93 c.2.1.2 136219 1eny 268 23.97 1xu9A 286 24.20 c.2.1.2 116052 2gt1A 326 24.33 1w6uA 302 24.63 c.2.1.2 114288 1tk9A 188 24.75 c.80.1.3 107082 1ja9A 274 24.97 c.2.1.2 62817 2iyfA 430 25.91 3crrA 323 26.58 1i2cA 404 26.59 c.2.1.2 83666 2o2zA 323 27.05 2ae2A 260 27.34 c.2.1.2 29945 2dm6A 333 28.74 b.35.1.2,c.2.1.1 131567,131568 2masA 314 29.33 c.70.1.1 34810 1pswA 348 29.49 c.87.1.7 88287 1hdcA 253 30.17 c.2.1.2 29862 1eziA 228 31.01 c.68.1.13 34512 1tvnA 293 31.43 c.1.8.3 119360 2c07A 285 31.50 c.2.1.2 129577 2cuyA 305 31.63 1e6uA 321 31.64 c.2.1.2 29805 1udcA 338 32.57 c.2.1.2 29785 1qwjA 229 33.08 c.68.1.13 96478 1vf8A 377 33.26 c.1.8.5,d.26.3.1 120029,120030 1edtA 271 33.30 c.1.8.5 28993 2qtwB 546 33.36 1y8cA 246 34.28 c.66.1.43 116563 2yvaA 196 34.53 1jx6A 342 34.94 c.93.1.1 67406 2o6lA 170 35.75 1zc6A 305 37.11 c.55.1.5,c.55.1.5 124888,124889 3c1oA 321 37.95 1nhsA 447 38.56 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2i2wA 212 38.71 1xahA 354 38.75 1g0oA 283 39.35 c.2.1.2 60181 1chd 203 39.44 1iz0A 302 39.59 b.35.1.2,c.2.1.1 83821,83822 1nhpA 447 39.76 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1yoeA 322 39.87 2atsA 292 39.92 c.1.10.1 127306 2dknA 255 40.07 1i24A 404 40.07 c.2.1.2 83663 2eihA 343 40.11 1w3iA 293 40.12 c.1.10.1 109152 2p1zA 180 40.38 2f9sA 151 40.61 c.47.1.10 133168 2p5yA 311 40.75 1q6zA 528 40.82 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1mlaA 309 40.95 c.19.1.1,d.58.23.1 31031,39383 1xttA 216 41.00 c.61.1.1 122300 2ihtA 573 41.49 2dtxA 264 41.91 2ax4A 198 42.05 1e5kA 201 42.15 c.68.1.8 34578 2gf3A 389 42.15 c.3.1.2,d.16.1.3 135070,135071 2hqbA 296 42.38 1mla 309 42.51 1e6wA 260 42.59 c.2.1.2 59326 1uzmA 247 42.97 c.2.1.2 119811 2v6gA 364 43.60 2ew8A 249 44.34 c.2.1.2 132447 2i49A 429 45.73 2dkfA 431 46.09 1bu6O 501 46.24 c.55.1.4,c.55.1.4 33499,33500 1shuX 182 46.68 c.62.1.1 98882 1i52A 236 47.11 c.68.1.13 61767 1fmcA 255 47.76 c.2.1.2 29856 1geeA 261 47.77 c.2.1.2 90509 1nffA 260 47.89 c.2.1.2 80457 3bhnA 236 49.49 1bd0A 388 50.60 b.49.2.2,c.1.6.1 26480,28642 2pq6A 482 50.82 2pr7A 137 51.04 2pocA 367 51.34 2pezA 179 51.43 2z8xA 617 51.84 2bneA 241 52.49 c.73.1.3 128824 1wlyA 333 52.96 2pd6A 264 53.06 1eiwA 111 53.90 c.23.3.1 31130 1xg5A 279 54.68 c.2.1.2 115277 2uz1A 563 54.72 2fexA 188 56.62 c.23.16.2 133354 3cdxA 354 57.43 2ffeA 311 57.62 c.143.1.1 133381 1v98A 140 57.75 1bdbA 277 58.16 c.2.1.2 29874 1e0cA 271 58.18 c.46.1.2,c.46.1.2 32717,32718 1vl8A 267 58.43 c.2.1.2 108733 1htwA 158 58.73 c.37.1.18 71083 2eg4A 230 59.14 1k2wA 256 59.21 c.2.1.2 90927 1kqpA 271 59.47 c.26.2.1 72883 2pzmA 330 59.53 1o7jA 327 59.61 c.88.1.1 81140 1zmtA 254 60.10 c.2.1.2 125363 1v7zA 260 60.95 c.125.1.1 100488 1gegA 256 61.09 c.2.1.2 29888 1yb1A 272 61.65 c.2.1.2 116599 1kngA 156 62.40 c.47.1.10 72777 1zemA 262 63.05 c.2.1.2 124984 1f3lA 321 63.14 c.66.1.6 59630 1hgxA 183 63.20 c.61.1.1 34027 1l5oA 356 63.22 c.39.1.1 77711 1dysA 348 63.64 c.6.1.1 30669 1je0A 236 63.85 c.56.2.1 66581 1gu7A 364 64.02 b.35.1.2,c.2.1.1 83321,83322 2o23A 265 64.03 c.2.1.2 138884 1r61A 207 64.58 c.8.8.1 97138 1pwxA 254 64.65 c.2.1.2 95262 2p4hX 322 64.79 2eixA 243 64.93 1odkA 235 65.02 c.56.2.1 86863 1s3iA 310 65.16 b.46.1.1,c.65.1.1 98435,98436 1zmoA 244 65.31 1ybdA 239 65.70 c.73.1.3 122884 3cjpA 272 65.72 2fr1A 486 65.86 c.2.1.2,c.2.1.2 133961,133962 1x6vA 630 66.08 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1oi7A 288 66.64 c.2.1.8,c.23.4.1 87049,87050 2e5fA 325 66.77 1wvgA 359 66.93 c.2.1.2 121339 2d1yA 256 67.02 c.2.1.2 131151 1y56B 382 67.16 2pqmA 343 67.19 2c1xA 456 67.22 1spxA 278 67.46 c.2.1.2 98958 1ir6A 424 67.78 c.107.1.2 71342 2ph3A 245 67.83 3beoA 375 68.28 2a5lA 200 68.74 c.23.5.8 126176 1bdb 277 68.94 3c3pA 210 69.79 2q62A 247 70.30 4pgaA 337 70.50 c.88.1.1 35565 1yxmA 303 70.73 c.2.1.2 124192 1ryiA 382 70.74 c.3.1.2,d.16.1.3 118813,118814 1wmaA 276 70.91 c.2.1.2 121042 2pnfA 248 71.01 1ceoA 343 71.62 c.1.8.3 28808 1qorA 327 73.14 b.35.1.2,c.2.1.1 24766,29782 2hxvA 360 73.61 c.71.1.2,c.97.1.2 136859,136860 1wkaA 147 73.74 b.51.1.1 120978 1hxhA 253 74.01 c.2.1.2 76725 2bgxA 261 74.31 a.20.1.1,d.118.1.1 128504,128505 2rfgA 297 75.31 1h1nA 305 75.49 c.1.8.3 70855 1ne7A 289 76.18 c.124.1.1 91833 1rxyA 253 76.54 c.56.2.1 98065 2pk3A 321 76.70 1zbqA 327 76.88 c.2.1.2 124862 2f46A 156 77.06 1qgoA 264 77.13 c.92.1.2 35596 2jahA 247 77.27 1zk4A 251 77.45 c.2.1.2 125176 1mjnA 179 77.81 c.62.1.1 79210 1b3bA 415 78.12 c.2.1.7,c.58.1.1 30244,33892 1j7jA 178 78.18 c.61.1.1 84131 2csuA 457 78.59 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2f2sA 406 78.98 2egxA 269 79.38 2dvzA 314 79.53 1pl8A 356 79.73 b.35.1.2,c.2.1.1 94878,94879 8abp 306 79.99 3ca8A 266 80.04 2bcoA 350 80.29 c.56.5.7 128302 3b9gA 328 80.70 1x1eA 239 81.01 2bgkA 278 81.47 c.2.1.2 128480 1wxiA 275 81.52 c.26.2.1 121400 2qgnA 322 82.64 1ri5A 298 82.76 c.66.1.34 97502 2jfkA 433 84.10 2dplA 308 84.77 1l6rA 227 85.19 c.108.1.10 77768 2bsxA 253 85.46 c.56.2.1 129128 1vicA 262 85.51 c.68.1.13 100756 1t2aA 375 85.80 c.2.1.2 99078 2zf5O 497 86.24 1uayA 242 86.98 c.2.1.2 88390 1k1eA 180 88.07 c.108.1.5 67995 2a3nA 355 88.31 1st9A 143 88.43 c.47.1.10 98987 1c93A 265 88.90 c.1.8.5 28998 2ffiA 288 89.86 c.1.9.15 133385