# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 6.35e-23 c.69.1.25 77772 1vlqA 337 6.67e-22 c.69.1.25 108848 1lzlA 323 3.09e-21 c.69.1.2 78306 2z3zA 706 3.54e-21 2hu5A 582 6.02e-21 b.69.7.2,c.69.1.33 136763,136764 1jkmA 358 6.34e-21 c.69.1.2 34633 2jbwA 386 6.65e-21 2hdwA 367 7.61e-21 1u4nA 310 8.07e-21 c.69.1.2 113021 1u2eA 289 9.25e-21 2d5lA 706 1.07e-20 1jfrA 262 2.12e-20 c.69.1.16 34724 2og1A 286 2.38e-20 1zd3A 555 2.89e-20 c.108.1.2,c.69.1.11 124930,124931 1orvA 728 3.66e-20 b.70.3.1,c.69.1.24 87354,87355 1b6gA 310 3.71e-20 c.69.1.8 34661 2pujA 286 4.30e-20 3b5eA 223 5.43e-20 2o7rA 338 5.49e-20 2puhA 286 6.00e-20 1c4xA 285 6.25e-20 c.69.1.10 34684 2uz0A 263 6.29e-20 1b6g 310 6.48e-20 2rhwA 283 7.54e-20 1q0rA 298 8.07e-20 c.69.1.28 95508 1fj2A 232 8.53e-20 c.69.1.14 34720 2b61A 377 8.81e-20 1hlgA 371 9.54e-20 c.69.1.6 34656 2r11A 306 9.60e-20 2fx5A 258 1.08e-19 1vkhA 273 1.12e-19 c.69.1.32 108662 1bn7A 294 1.13e-19 c.69.1.8 34677 1h2wA 710 1.22e-19 b.69.7.1,c.69.1.4 76596,76597 1auoA 218 1.31e-19 c.69.1.14 34716 2qm0A 275 1.32e-19 2o2gA 223 1.40e-19 1k8qA 377 1.63e-19 c.69.1.6 72177 3bdiA 207 1.70e-19 1azwA 313 1.77e-19 c.69.1.7 34658 1jjiA 311 1.85e-19 c.69.1.2 66766 2pl5A 366 2.10e-19 1uk8A 282 2.23e-19 c.69.1.10 107907 1jjfA 268 2.74e-19 c.69.1.2 66765 1wm1A 317 2.88e-19 c.69.1.7 109405 1zi8A 236 2.89e-19 2bklA 695 2.95e-19 1wb4A 297 2.96e-19 c.69.1.2 120827 1zoiA 276 3.36e-19 2hm7A 310 3.46e-19 2i3dA 249 3.66e-19 2fukA 220 3.78e-19 1din 236 4.07e-19 1o6gA 710 4.94e-19 b.69.7.1,c.69.1.4 81087,81088 1j1iA 296 5.67e-19 c.69.1.10 83977 2qmqA 286 5.78e-19 3bxpA 277 5.79e-19 2ocgA 254 6.00e-19 2e3jA 356 6.04e-19 2qruA 274 6.42e-19 1womA 271 6.59e-19 2b20A 403 6.99e-19 b.1.18.20,c.69.1.2 127685,127686 1ufoA 238 7.40e-19 c.69.1.27 99344 1brt 277 7.60e-19 1mj5A 302 7.86e-19 c.69.1.8 91285 2r8bA 251 8.97e-19 1mtzA 293 9.11e-19 c.69.1.7 79467 1dqzA 280 1.14e-18 c.69.1.3 34638 3c8dA 403 1.16e-18 1f0nA 285 1.25e-18 c.69.1.3 34636 1a8qA 274 1.35e-18 c.69.1.12 34702 1hkhA 279 1.38e-18 c.69.1.12 90628 1pv1A 299 1.40e-18 c.69.1.34 111639 1xqwA 293 1.52e-18 1xklA 273 1.58e-18 c.69.1.20 115410 2veoA 441 1.66e-18 1lnsA 763 1.72e-18 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1imjA 210 1.77e-18 c.69.1.23 71246 1r88A 280 1.83e-18 c.69.1.3 97219 1a8sA 273 1.84e-18 c.69.1.12 34710 2cjpA 328 1.93e-18 1va4A 279 1.97e-18 c.69.1.12 108458 2o2iA 300 2.08e-18 2qvbA 297 2.84e-18 1brtA 277 3.02e-18 c.69.1.12 34699 3bf7A 255 3.15e-18 1mpxA 615 3.25e-18 b.18.1.13,c.69.1.21 85041,85042 1y37A 304 3.45e-18 3bwxA 285 3.89e-18 1qj4A 257 4.53e-18 c.69.1.20 34796 3c5vA 316 5.50e-18 2psdA 318 5.86e-18 1ehyA 294 5.95e-18 c.69.1.11 34693 2pblA 262 7.20e-18 1qo7A 394 9.01e-18 c.69.1.11 34697 2yysA 286 9.32e-18 1yr2A 741 1.14e-17 1tqhA 247 1.15e-17 c.69.1.29 107225 1r1dA 247 1.19e-17 c.69.1.29 96813 2gzsA 278 2.31e-17 1m33A 258 2.32e-17 c.69.1.26 78514 1ju3A 583 4.79e-17 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 5.78e-17 c.69.1.17 34726 2hfkA 319 1.03e-16 1pjaA 302 5.05e-16 c.69.1.13 94758 1cvlA 319 5.36e-16 c.69.1.18 34786 1qlwA 328 8.30e-16 c.69.1.15 34722 1ycdA 243 1.45e-15 1r3dA 264 1.99e-15 c.69.1.35 111680 2ogtA 498 2.52e-15 1tca 317 3.94e-15 2rauA 354 4.33e-15 2q0xA 335 4.86e-15 1qe3A 489 4.87e-15 c.69.1.1 34630 2qjwA 176 5.18e-15 1mnaA 298 6.75e-15 c.69.1.22 79322 3bdvA 191 8.73e-15 1ukcA 522 1.56e-14 c.69.1.17 107911 1llfA 534 2.84e-14 c.69.1.17 78094 1ea5A 537 3.00e-14 c.69.1.1 34592 1ispA 181 5.26e-14 c.69.1.18 76778 1p0iA 529 7.73e-14 c.69.1.1 93867 1ei9A 279 8.31e-14 c.69.1.13 34713 1ys1X 320 1.01e-13 1cvl 319 1.30e-13 2qs9A 194 1.57e-13 1thgA 544 1.70e-13 c.69.1.17 34763 1jmkC 230 8.25e-13 c.69.1.22 71747 1uxoA 192 1.12e-12 c.69.1.31 108121 2bceA 585 1.13e-12 c.69.1.1 34625 1bu8A 452 1.50e-12 b.12.1.2,c.69.1.19 23647,34795 1thg 544 1.60e-12 3bixA 574 1.80e-12 2h7cA 542 2.41e-12 c.69.1.1 136207 2px6A 316 2.54e-12 1hplA 449 3.24e-12 b.12.1.2,c.69.1.19 23639,34787 2cb9A 244 4.76e-12 2bce 581 5.40e-12 1thtA 305 3.47e-11 c.69.1.13 34711 1ivyA 452 2.65e-10 c.69.1.5 34654 2dsnA 387 1.14e-08 1ac5A 483 1.73e-07 c.69.1.5 34653 2z5gA 387 2.79e-06 1ku0A 388 4.06e-06 c.69.1.18 72994 1uwcA 261 1.01e-05 c.69.1.17 100101 1tib 269 1.88e-05 1cex 214 2.09e-05 2d80A 318 4.19e-05 1whsA 255 5.67e-05 c.69.1.5 34649 1g66A 207 6.30e-05 c.69.1.30 31329 1tibA 269 0.000120 c.69.1.17 34738 1cexA 214 0.000161 c.69.1.30 31285 3tglA 269 0.000192 c.69.1.17 34733 2czqA 205 0.000372 2d81A 318 0.000501 2oryA 346 0.002106 1whsB 153 0.1257 1edgA 380 0.2362 c.1.8.3 28807 1moq 368 3.279 1f0kA 364 4.053 c.87.1.2 35465 1v4vA 376 4.863 c.87.1.3 100313 1o9gA 250 4.973 c.66.1.29 86692 2df8A 325 4.989 1ooeA 236 5.278 c.2.1.2 87196 1e8cA 498 5.619 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2gruA 368 5.980 2q7xA 326 6.815 1iirA 415 6.922 c.87.1.5 62453 3cjpA 272 7.324 2p91A 285 8.082 1e6uA 321 8.973 c.2.1.2 29805 2c2nA 339 9.748 3c86A 328 9.752 1p3dA 475 10.30 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2nm0A 253 10.47 1kpgA 287 10.55 c.66.1.18 68735 2f5xA 312 10.61 2ze7A 253 11.17 1oxwA 373 11.30 c.19.1.3 87539 1x1tA 260 11.51 c.2.1.2 121597 2ppwA 216 12.23 2z1mA 345 12.28 1eny 268 12.34 2j3hA 345 13.00 2cb0A 333 13.05 2gt1A 326 13.32 2yvuA 186 13.39 2h7mA 269 13.47 c.2.1.2 136219 2vc7A 314 13.48 1fjhA 257 13.49 c.2.1.2 29870 1rrmA 386 13.77 e.22.1.2 105081 1xgkA 352 13.83 c.2.1.2 115286 2pk3A 321 14.58 1vf8A 377 15.12 c.1.8.5,d.26.3.1 120029,120030 2qmoA 220 16.67 2d4wA 504 17.31 2qt1A 207 18.06 1tk9A 188 19.17 c.80.1.3 107082 2deoA 230 19.44 2gasA 307 19.65 1bf6A 291 19.67 c.1.9.3 29065 2pocA 367 19.71 2jepA 395 19.97 2jfgA 445 20.87 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1ja9A 274 20.93 c.2.1.2 62817 4uagA 437 20.98 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1mla 309 21.05 2p5yA 311 23.61 1uluA 261 23.63 c.2.1.2 113292 2bkaA 242 24.11 c.2.1.2 128666 2i49A 429 24.38 1mlaA 309 24.94 c.19.1.1,d.58.23.1 31031,39383 1tcvA 287 26.10 3crrA 323 26.60 3b55A 451 26.92 2iyfA 430 27.98 1y5mA 276 28.07 c.2.1.2 122645 1w3iA 293 28.16 c.1.10.1 109152 2h1yA 321 28.17 1f2dA 341 28.46 c.79.1.1 35298 1bu6O 501 28.67 c.55.1.4,c.55.1.4 33499,33500 2q62A 247 29.22 3c4vA 426 29.32 1udcA 338 29.68 c.2.1.2 29785 2cuyA 305 29.94 1tvnA 293 30.25 c.1.8.3 119360 1qwjA 229 30.38 c.68.1.13 96478 2c07A 285 30.60 c.2.1.2 129577 2ihtA 573 31.17 1ijbA 202 31.80 c.62.1.1 71229 1v98A 140 31.94 2a3nA 355 32.05 1v7zA 260 32.33 c.125.1.1 100488 1g0oA 283 32.44 c.2.1.2 60181 2i2wA 212 32.50 1xu9A 286 32.69 c.2.1.2 116052 2e18A 257 32.91 2dm6A 333 34.12 b.35.1.2,c.2.1.1 131567,131568 2z8xA 617 34.18 1chd 203 35.10 1ml4A 308 36.00 c.78.1.1,c.78.1.1 79255,79256 1eziA 228 36.01 c.68.1.13 34512 2c1xA 456 36.66 1uzmA 247 36.83 c.2.1.2 119811 1wvgA 359 37.11 c.2.1.2 121339 2f9sA 151 37.14 c.47.1.10 133168 2ae2A 260 37.25 c.2.1.2 29945 1hdcA 253 37.38 c.2.1.2 29862 2atsA 292 37.44 c.1.10.1 127306 1kngA 156 37.49 c.47.1.10 72777 2p4hX 322 37.87 1w6uA 302 37.97 c.2.1.2 114288 1i52A 236 39.25 c.68.1.13 61767 2bgxA 261 39.73 a.20.1.1,d.118.1.1 128504,128505 1pswA 348 39.76 c.87.1.7 88287 1e5kA 201 40.28 c.68.1.8 34578 1rxyA 253 40.38 c.56.2.1 98065 1e6wA 260 40.92 c.2.1.2 59326 2gf3A 389 41.13 c.3.1.2,d.16.1.3 135070,135071 2ef5A 290 41.43 2hqbA 296 41.70 2p8jA 209 41.79 2dknA 255 43.17 1zc6A 305 43.20 c.55.1.5,c.55.1.5 124888,124889 1wkaA 147 43.55 b.51.1.1 120978 1y8cA 246 43.58 c.66.1.43 116563 2qtwB 546 44.42 2yvaA 196 45.05 2dvtA 327 45.47 c.1.9.15 131793 2eg4A 230 45.75 1yoeA 322 46.17 2masA 314 47.31 c.70.1.1 34810 1t2aA 375 47.45 c.2.1.2 99078 1nffA 260 47.47 c.2.1.2 80457 2o6lA 170 47.53 3cdxA 354 47.81 1l3iA 192 48.63 c.66.1.22 77676 1i2cA 404 48.66 c.2.1.2 83666 2egxA 269 48.95 2ax4A 198 49.66 3bhnA 236 50.24 2ekpA 239 50.48 2pd6A 264 50.63 2dkfA 431 50.75 2v6gA 364 51.15 1zmtA 254 51.18 c.2.1.2 125363 2bllA 345 51.33 c.2.1.2 128733 2amlA 373 51.53 1jx6A 342 51.59 c.93.1.1 67406 1nhpA 447 51.77 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3ca8A 266 52.53 2dplA 308 52.86 1eiwA 111 52.99 c.23.3.1 31130 2pq6A 482 53.28 2ew8A 249 53.41 c.2.1.2 132447 2dvzA 314 54.80 2am1A 454 55.16 1zbqA 327 55.27 c.2.1.2 124862 3beoA 375 55.40 3c3jA 384 56.70 1gu7A 364 56.84 b.35.1.2,c.2.1.1 83321,83322 2p3rA 510 56.90 c.55.1.4,c.55.1.4 139471,139472 4pgaA 337 57.36 c.88.1.1 35565 2o2zA 323 57.55 1i24A 404 58.62 c.2.1.2 83663 1xttA 216 58.73 c.61.1.1 122300 1oi7A 288 59.06 c.2.1.8,c.23.4.1 87049,87050 2pqmA 343 59.12 1xg5A 279 59.23 c.2.1.2 115277 1bd0A 388 59.51 b.49.2.2,c.1.6.1 26480,28642 1mf7A 194 60.02 c.62.1.1 84937 1q6zA 528 60.26 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2aotA 292 60.29 c.66.1.19 127098 1geeA 261 60.61 c.2.1.2 90509 3c1oA 321 60.95 2p1zA 180 60.97 2pzmA 330 61.05 2pezA 179 61.35 2jfkA 433 62.35 1zemA 262 62.69 c.2.1.2 124984 1fmcA 255 63.70 c.2.1.2 29856 1yxmA 303 63.98 c.2.1.2 124192 1st9A 143 64.07 c.47.1.10 98987 1nhsA 447 64.39 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1e0cA 271 64.66 c.46.1.2,c.46.1.2 32717,32718 2f46A 156 64.72 1ve1A 304 64.88 c.79.1.1 120007 1o1xA 155 65.48 c.121.1.1 86553 1h1dA 221 65.85 c.66.1.1 83452 1je0A 236 66.12 c.56.2.1 66581 2eixA 243 66.29 1vl8A 267 66.86 c.2.1.2 108733 2pnfA 248 67.64 2acvA 463 67.74 2b1kA 168 68.46 1qsgA 265 68.65 c.2.1.2 29935 1dysA 348 68.81 c.6.1.1 30669 1gegA 256 69.00 c.2.1.2 29888 2a5lA 200 69.07 c.23.5.8 126176 2ac7A 235 69.33 c.56.2.1 126543 2pr7A 137 69.61 2uz1A 563 69.85 1odkA 235 69.97 c.56.2.1 86863 2zf5O 497 70.04 2yvdA 431 70.17 1h5qA 265 70.23 c.2.1.2 60643 3c3pA 210 71.96 1k2wA 256 72.86 c.2.1.2 90927 2nuwA 288 73.42 2pw6A 271 73.88 1vhwA 253 74.98 c.56.2.1 100706 2f2sA 406 75.20 2gh1A 301 75.52 c.66.1.49 135170 2fr1A 486 75.59 c.2.1.2,c.2.1.2 133961,133962 1o58A 303 75.69 c.79.1.1 92491 1k0fA 277 76.08 c.92.2.2 71974 2d1yA 256 77.34 c.2.1.2 131151 2dtxA 264 77.66 2pptA 155 79.02 2iyaA 424 79.23 2bsxA 253 80.44 c.56.2.1 129128 1h1nA 305 80.60 c.1.8.3 70855 1htwA 158 80.72 c.37.1.18 71083 8abp 306 80.76 1mjnA 179 80.80 c.62.1.1 79210 2qgnA 322 81.48 1d7oA 297 81.89 c.2.1.2 29907 1eceA 358 82.98 c.1.8.3 28813 2gouA 365 83.14 1r61A 207 83.20 c.8.8.1 97138 1yb0A 159 83.70 d.118.1.1 122865 1zx0A 236 83.97 c.66.1.16 125757 2jahA 247 84.13 1y44A 320 84.24 d.157.1.7 122608 2o23A 265 84.26 c.2.1.2 138884 1w5fA 353 84.46 c.32.1.1,d.79.2.1 114247,114248 1gkpA 458 84.54 b.92.1.3,c.1.9.6 70231,70232 2ph3A 245 84.83 2eihA 343 85.35 2e7zA 727 85.44 1b3bA 415 85.57 c.2.1.7,c.58.1.1 30244,33892 1ryiA 382 86.00 c.3.1.2,d.16.1.3 118813,118814 1wmaA 276 86.15 c.2.1.2 121042 2r8wA 332 86.29 2dstA 131 86.66 1zk4A 251 86.94 c.2.1.2 125176 2bneA 241 86.96 c.73.1.3 128824 1zmoA 244 87.33 1dtxA 59 87.62 g.8.1.1 44551 1kqpA 271 87.71 c.26.2.1 72883 2cl5A 221 88.45 c.66.1.1 130570 1t0iA 191 89.19 c.23.5.4 106209 2jfnA 285 89.23 1uayA 242 89.28 c.2.1.2 88390 1thx 115 89.40 2cmd 312 89.43 2e5fA 325 89.80