# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.15e-24 c.69.1.25 77772 1vlqA 337 2.12e-23 c.69.1.25 108848 1lzlA 323 2.60e-23 c.69.1.2 78306 1u4nA 310 7.25e-23 c.69.1.2 113021 2z3zA 706 1.02e-22 1jkmA 358 1.02e-22 c.69.1.2 34633 2hdwA 367 1.03e-22 2d5lA 706 2.69e-22 2hu5A 582 3.38e-22 b.69.7.2,c.69.1.33 136763,136764 2jbwA 386 3.72e-22 1u2eA 289 4.60e-22 1orvA 728 5.59e-22 b.70.3.1,c.69.1.24 87354,87355 2og1A 286 5.85e-22 1jfrA 262 8.81e-22 c.69.1.16 34724 1b6gA 310 1.05e-21 c.69.1.8 34661 1zd3A 555 1.51e-21 c.108.1.2,c.69.1.11 124930,124931 2rhwA 283 1.72e-21 2uz0A 263 1.74e-21 2puhA 286 1.82e-21 2pujA 286 1.91e-21 2o7rA 338 1.94e-21 2hm7A 310 2.31e-21 1b6g 310 2.46e-21 1c4xA 285 2.52e-21 c.69.1.10 34684 2r11A 306 2.57e-21 1jjiA 311 2.64e-21 c.69.1.2 66766 1q0rA 298 2.72e-21 c.69.1.28 95508 1h2wA 710 3.40e-21 b.69.7.1,c.69.1.4 76596,76597 3b5eA 223 3.46e-21 2fx5A 258 3.58e-21 1hlgA 371 3.85e-21 c.69.1.6 34656 1fj2A 232 4.43e-21 c.69.1.14 34720 1zoiA 276 4.83e-21 2qm0A 275 4.84e-21 3bdiA 207 6.80e-21 1azwA 313 7.87e-21 c.69.1.7 34658 1bn7A 294 7.95e-21 c.69.1.8 34677 1uk8A 282 8.28e-21 c.69.1.10 107907 1auoA 218 8.39e-21 c.69.1.14 34716 1zi8A 236 8.75e-21 2o2gA 223 9.34e-21 1wm1A 317 9.80e-21 c.69.1.7 109405 1k8qA 377 1.05e-20 c.69.1.6 72177 2b61A 377 1.09e-20 1din 236 1.13e-20 2i3dA 249 1.27e-20 1jjfA 268 1.31e-20 c.69.1.2 66765 2e3jA 356 1.35e-20 2bklA 695 1.51e-20 1womA 271 1.56e-20 1brt 277 1.70e-20 2ocgA 254 1.73e-20 1mtzA 293 1.82e-20 c.69.1.7 79467 1o6gA 710 1.93e-20 b.69.7.1,c.69.1.4 81087,81088 1vkhA 273 1.99e-20 c.69.1.32 108662 2fukA 220 2.10e-20 1xqwA 293 2.23e-20 1ufoA 238 2.59e-20 c.69.1.27 99344 1wb4A 297 2.60e-20 c.69.1.2 120827 2qmqA 286 3.84e-20 2pl5A 366 3.90e-20 2qruA 274 4.35e-20 1j1iA 296 4.48e-20 c.69.1.10 83977 1a8sA 273 4.75e-20 c.69.1.12 34710 1a8qA 274 5.00e-20 c.69.1.12 34702 2r8bA 251 5.15e-20 1xklA 273 5.38e-20 c.69.1.20 115410 1va4A 279 5.72e-20 c.69.1.12 108458 3bf7A 255 5.89e-20 2cjpA 328 6.48e-20 1imjA 210 6.60e-20 c.69.1.23 71246 3c8dA 403 7.15e-20 2b20A 403 7.31e-20 b.1.18.20,c.69.1.2 127685,127686 3bwxA 285 7.36e-20 3bxpA 277 7.44e-20 1brtA 277 7.44e-20 c.69.1.12 34699 1pv1A 299 7.76e-20 c.69.1.34 111639 2veoA 441 8.78e-20 1mj5A 302 9.52e-20 c.69.1.8 91285 1hkhA 279 9.65e-20 c.69.1.12 90628 1dqzA 280 9.88e-20 c.69.1.3 34638 1y37A 304 1.19e-19 1lnsA 763 1.40e-19 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1f0nA 285 1.45e-19 c.69.1.3 34636 2psdA 318 2.01e-19 2o2iA 300 2.20e-19 2yysA 286 2.40e-19 2qvbA 297 2.55e-19 1ehyA 294 3.06e-19 c.69.1.11 34693 1qj4A 257 3.16e-19 c.69.1.20 34796 3c5vA 316 3.21e-19 1r1dA 247 3.42e-19 c.69.1.29 96813 1r88A 280 3.76e-19 c.69.1.3 97219 1tqhA 247 4.17e-19 c.69.1.29 107225 1mpxA 615 4.86e-19 b.18.1.13,c.69.1.21 85041,85042 1qo7A 394 7.23e-19 c.69.1.11 34697 1yr2A 741 1.00e-18 1m33A 258 1.19e-18 c.69.1.26 78514 2pblA 262 1.64e-18 2gzsA 278 3.64e-18 1ju3A 583 4.65e-18 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 5.14e-18 c.69.1.17 34726 2hfkA 319 9.50e-18 1pjaA 302 3.92e-17 c.69.1.13 94758 1cvlA 319 7.75e-17 c.69.1.18 34786 1qlwA 328 8.31e-17 c.69.1.15 34722 1r3dA 264 1.20e-16 c.69.1.35 111680 1ycdA 243 1.79e-16 2ogtA 498 3.31e-16 2rauA 354 4.78e-16 1tca 317 6.57e-16 1qe3A 489 6.64e-16 c.69.1.1 34630 2qjwA 176 7.99e-16 1mnaA 298 1.24e-15 c.69.1.22 79322 3bdvA 191 1.43e-15 2q0xA 335 1.65e-15 1ispA 181 4.05e-15 c.69.1.18 76778 1ei9A 279 4.75e-15 c.69.1.13 34713 1ea5A 537 6.30e-15 c.69.1.1 34592 1llfA 534 6.39e-15 c.69.1.17 78094 1ukcA 522 8.04e-15 c.69.1.17 107911 1p0iA 529 1.33e-14 c.69.1.1 93867 1ys1X 320 1.65e-14 2qs9A 194 3.13e-14 1thgA 544 4.60e-14 c.69.1.17 34763 1cvl 319 7.43e-14 1uxoA 192 1.24e-13 c.69.1.31 108121 1jmkC 230 3.82e-13 c.69.1.22 71747 1bu8A 452 4.10e-13 b.12.1.2,c.69.1.19 23647,34795 2bceA 585 4.55e-13 c.69.1.1 34625 3bixA 574 4.73e-13 1thg 544 6.04e-13 1hplA 449 6.94e-13 b.12.1.2,c.69.1.19 23639,34787 2h7cA 542 7.40e-13 c.69.1.1 136207 2px6A 316 8.82e-13 2cb9A 244 2.07e-12 2bce 581 2.61e-12 1thtA 305 1.13e-11 c.69.1.13 34711 1ivyA 452 1.06e-10 c.69.1.5 34654 2dsnA 387 3.98e-09 1ac5A 483 1.58e-07 c.69.1.5 34653 2z5gA 387 1.93e-06 1ku0A 388 5.65e-06 c.69.1.18 72994 1uwcA 261 2.07e-05 c.69.1.17 100101 1tib 269 3.34e-05 2d80A 318 5.12e-05 1cex 214 6.81e-05 1g66A 207 8.54e-05 c.69.1.30 31329 1whsA 255 9.03e-05 c.69.1.5 34649 1tibA 269 0.000287 c.69.1.17 34738 1cexA 214 0.000536 c.69.1.30 31285 2d81A 318 0.000740 3tglA 269 0.000777 c.69.1.17 34733 2czqA 205 0.001181 2oryA 346 0.003342 1whsB 153 0.06214 1edgA 380 0.4462 c.1.8.3 28807 1iirA 415 1.529 c.87.1.5 62453 1f0kA 364 1.799 c.87.1.2 35465 2f5xA 312 5.165 2c2nA 339 5.349 2ze7A 253 5.568 1o9gA 250 6.189 c.66.1.29 86692 2z8xA 617 6.973 3cjpA 272 7.051 1moq 368 7.221 1tk9A 188 7.542 c.80.1.3 107082 2df8A 325 8.720 1p3dA 475 8.764 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1pswA 348 9.070 c.87.1.7 88287 1x1tA 260 9.615 c.2.1.2 121597 2q7xA 326 9.663 1v4vA 376 9.98 c.87.1.3 100313 1fjhA 257 10.16 c.2.1.2 29870 1mla 309 10.60 2ppwA 216 11.47 1fmcA 255 11.77 c.2.1.2 29856 2i49A 429 12.05 1ooeA 236 12.50 c.2.1.2 87196 2p91A 285 13.89 2deoA 230 14.20 1w3iA 293 14.72 c.1.10.1 109152 2yvuA 186 14.78 1mlaA 309 15.04 c.19.1.1,d.58.23.1 31031,39383 2h1yA 321 15.18 2qmoA 220 15.86 2fqxA 318 16.12 2p5yA 311 16.61 2cuyA 305 16.69 2gasA 307 16.89 1eny 268 17.08 2z1mA 345 17.40 1oxwA 373 17.54 c.19.1.3 87539 2dvzA 314 17.55 1gvfA 286 17.83 c.1.10.2 70599 1ja9A 274 18.27 c.2.1.2 62817 4uagA 437 18.31 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1e6uA 321 18.73 c.2.1.2 29805 2gt1A 326 18.87 1bf6A 291 19.14 c.1.9.3 29065 2bkaA 242 19.35 c.2.1.2 128666 2o2zA 323 20.15 1eziA 228 20.55 c.68.1.13 34512 3c4vA 426 21.11 2cb0A 333 21.42 1zbqA 327 21.84 c.2.1.2 124862 1qwjA 229 22.46 c.68.1.13 96478 1xu9A 286 22.56 c.2.1.2 116052 2iyfA 430 22.87 3c1oA 321 22.88 1htwA 158 23.03 c.37.1.18 71083 2h7mA 269 23.17 c.2.1.2 136219 1tvnA 293 23.35 c.1.8.3 119360 1ml4A 308 23.59 c.78.1.1,c.78.1.1 79255,79256 2vc7A 314 23.67 2ae2A 260 23.69 c.2.1.2 29945 2gruA 368 24.10 3c86A 328 24.24 2jfgA 445 24.48 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2nm0A 253 24.88 1w6uA 302 24.92 c.2.1.2 114288 1l3iA 192 25.05 c.66.1.22 77676 2pocA 367 25.31 1v7zA 260 25.72 c.125.1.1 100488 1hdcA 253 26.13 c.2.1.2 29862 1y5mA 276 26.58 c.2.1.2 122645 1y8cA 246 26.82 c.66.1.43 116563 2yvaA 196 27.29 2q5cA 196 27.73 1ijbA 202 28.00 c.62.1.1 71229 2d4wA 504 28.15 1zc6A 305 28.88 c.55.1.5,c.55.1.5 124888,124889 2dtxA 264 28.98 2pk3A 321 29.09 1tcvA 287 29.15 2iyaA 424 29.34 2e18A 257 29.79 1rrmA 386 29.84 e.22.1.2 105081 1byi 224 31.80 1nffA 260 33.05 c.2.1.2 80457 2gs8A 317 33.06 1i2cA 404 33.29 c.2.1.2 83666 2ew8A 249 33.33 c.2.1.2 132447 1udcA 338 33.93 c.2.1.2 29785 1bu6O 501 34.17 c.55.1.4,c.55.1.4 33499,33500 1vf8A 377 34.54 c.1.8.5,d.26.3.1 120029,120030 2j3hA 345 34.58 2dplA 308 35.36 1jx6A 342 36.87 c.93.1.1 67406 2eihA 343 37.13 2p6pA 384 37.45 1mjnA 179 38.29 c.62.1.1 79210 2amlA 373 39.56 2egxA 269 39.57 2r6jA 318 39.66 2ppvA 332 40.11 1g0oA 283 40.27 c.2.1.2 60181 3b55A 451 40.61 1zmoA 244 40.73 1hgxA 183 41.66 c.61.1.1 34027 1v98A 140 41.89 2f2sA 406 42.20 2a3nA 355 42.79 1mf7A 194 43.10 c.62.1.1 84937 1xgkA 352 43.62 c.2.1.2 115286 1e8cA 498 43.62 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1zemA 262 44.66 c.2.1.2 124984 1i24A 404 44.81 c.2.1.2 83663 2jahA 247 45.44 1uzmA 247 45.45 c.2.1.2 119811 1qorA 327 46.60 b.35.1.2,c.2.1.1 24766,29782 3crrA 323 46.66 2pzmA 330 46.72 2qt1A 207 46.77 1geeA 261 46.86 c.2.1.2 90509 2ihtA 573 47.67 2dkfA 431 48.29 3bhnA 236 48.77 1xg5A 279 49.27 c.2.1.2 115277 2hdyA 440 49.97 2aotA 292 50.34 c.66.1.19 127098 2yvdA 431 50.40 1kpgA 287 50.42 c.66.1.18 68735 1wvgA 359 50.87 c.2.1.2 121339 2qpqA 301 51.24 2nuwA 288 51.32 2d1yA 256 51.56 c.2.1.2 131151 1uluA 261 51.85 c.2.1.2 113292 2g29A 417 52.25 2qgnA 322 53.11 2i2wA 212 53.52 1e0cA 271 54.32 c.46.1.2,c.46.1.2 32717,32718 1gu7A 364 55.35 b.35.1.2,c.2.1.1 83321,83322 2bgkA 278 56.26 c.2.1.2 128480 1bdbA 277 56.53 c.2.1.2 29874 2pd6A 264 56.69 3c3pA 210 56.74 2f46A 156 58.70 1ceoA 343 60.59 c.1.8.3 28808 2ekpA 239 61.04 2r7aA 256 61.38 2dm6A 333 61.69 b.35.1.2,c.2.1.1 131567,131568 1edtA 271 62.19 c.1.8.5 28993 1zmaA 118 62.71 c.47.1.1 125354 1wlyA 333 62.95 2b1kA 168 63.79 1o1xA 155 64.01 c.121.1.1 86553 1gegA 256 64.54 c.2.1.2 29888 1usgA 346 64.68 c.93.1.1 99864 2p3rA 510 64.88 c.55.1.4,c.55.1.4 139471,139472 8abp 306 64.98 1wx1A 335 65.37 2dknA 255 65.59 1hxhA 253 65.75 c.2.1.2 76725 1i52A 236 65.97 c.68.1.13 61767 3c3jA 384 66.20 2r6r1 338 66.65 1yb4A 295 67.40 1s3iA 310 67.78 b.46.1.1,c.65.1.1 98435,98436 1y44A 320 68.32 d.157.1.7 122608 2pfuA 99 68.36 1chd 203 68.94 1vl8A 267 69.28 c.2.1.2 108733 2f9sA 151 69.69 c.47.1.10 133168 1x7gA 261 69.77 c.2.1.2 114929 2c5aA 379 70.40 c.2.1.2 129894 2pnfA 248 70.61 2iiiA 135 70.97 1h1dA 221 70.97 c.66.1.1 83452 1bdb 277 71.67 1yb0A 159 71.68 d.118.1.1 122865 1k0fA 277 71.83 c.92.2.2 71974 2v6gA 364 72.58 2odtX 328 72.64 1x6vA 630 72.66 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1k2wA 256 73.04 c.2.1.2 90927 1yxmA 303 73.14 c.2.1.2 124192 1e5kA 201 75.00 c.68.1.8 34578 1ve1A 304 75.12 c.79.1.1 120007 2masA 314 75.18 c.70.1.1 34810 1q6zA 528 75.72 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1iz0A 302 75.98 b.35.1.2,c.2.1.1 83821,83822 1ceo 343 76.46 2cfcA 250 76.53 2hfsA 332 76.69 2pq6A 482 76.95 2eaxA 164 76.96 2rkqA 169 77.28 2o23A 265 77.28 c.2.1.2 138884 1xm7A 195 78.67 d.159.1.8 115473 2zatA 260 78.94 2jfkA 433 79.67 2r91A 286 79.89 1o58A 303 80.04 c.79.1.1 92491 3beoA 375 80.08 1kngA 156 80.43 c.47.1.10 72777 1o7jA 327 81.88 c.88.1.1 81140 2pezA 179 82.07 1zr0B 63 82.29 1n3yA 198 83.20 c.62.1.1 79976 2q7dA 346 83.89 1je0A 236 83.94 c.56.2.1 66581 1yt8A 539 84.25 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1dtxA 59 84.41 g.8.1.1 44551 1vhwA 253 84.79 c.56.2.1 100706 1i60A 278 86.16 c.1.15.4 71118 2ew2A 316 86.31 2a5lA 200 86.34 c.23.5.8 126176 2e7zA 727 86.44 2c07A 285 86.76 c.2.1.2 129577 1a7jA 290 87.02 c.37.1.6 31952 1nni1 174 87.84 2bneA 241 87.95 c.73.1.3 128824 2gouA 365 88.07