# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.37e-26 c.69.1.25 77772 1vlqA 337 1.24e-25 c.69.1.25 108848 1lzlA 323 2.99e-25 c.69.1.2 78306 2z3zA 706 7.27e-25 1jkmA 358 1.15e-24 c.69.1.2 34633 1u4nA 310 1.42e-24 c.69.1.2 113021 2jbwA 386 1.83e-24 2d5lA 706 2.06e-24 2hu5A 582 3.04e-24 b.69.7.2,c.69.1.33 136763,136764 1u2eA 289 5.33e-24 2hdwA 367 5.80e-24 2og1A 286 8.32e-24 1jfrA 262 8.44e-24 c.69.1.16 34724 3b5eA 223 1.01e-23 1orvA 728 1.23e-23 b.70.3.1,c.69.1.24 87354,87355 1b6gA 310 1.28e-23 c.69.1.8 34661 1zd3A 555 1.71e-23 c.108.1.2,c.69.1.11 124930,124931 1fj2A 232 2.11e-23 c.69.1.14 34720 2o7rA 338 2.23e-23 2uz0A 263 2.34e-23 2b61A 377 2.45e-23 2pujA 286 2.51e-23 2puhA 286 2.68e-23 1b6g 310 2.89e-23 2rhwA 283 3.08e-23 2qm0A 275 3.26e-23 2fx5A 258 3.97e-23 1h2wA 710 5.58e-23 b.69.7.1,c.69.1.4 76596,76597 1jjiA 311 5.73e-23 c.69.1.2 66766 1vkhA 273 5.90e-23 c.69.1.32 108662 1zi8A 236 6.10e-23 1bn7A 294 6.24e-23 c.69.1.8 34677 1q0rA 298 6.43e-23 c.69.1.28 95508 2r11A 306 7.73e-23 1c4xA 285 8.03e-23 c.69.1.10 34684 1auoA 218 9.59e-23 c.69.1.14 34716 2o2gA 223 1.02e-22 1hlgA 371 1.13e-22 c.69.1.6 34656 1din 236 1.14e-22 1azwA 313 1.21e-22 c.69.1.7 34658 2bklA 695 1.38e-22 2hm7A 310 1.62e-22 2fukA 220 1.63e-22 1wm1A 317 1.64e-22 c.69.1.7 109405 1uk8A 282 1.93e-22 c.69.1.10 107907 1zoiA 276 2.09e-22 2b20A 403 2.10e-22 b.1.18.20,c.69.1.2 127685,127686 2pl5A 366 2.26e-22 3c8dA 403 2.67e-22 3bdiA 207 2.68e-22 2qmqA 286 2.80e-22 2ocgA 254 3.04e-22 2e3jA 356 3.05e-22 2i3dA 249 3.13e-22 2r8bA 251 3.31e-22 1k8qA 377 3.32e-22 c.69.1.6 72177 1jjfA 268 4.28e-22 c.69.1.2 66765 1womA 271 4.48e-22 1wb4A 297 5.02e-22 c.69.1.2 120827 1dqzA 280 5.03e-22 c.69.1.3 34638 1brt 277 5.03e-22 3bxpA 277 5.10e-22 1o6gA 710 5.60e-22 b.69.7.1,c.69.1.4 81087,81088 1ufoA 238 5.60e-22 c.69.1.27 99344 2veoA 441 6.09e-22 1mtzA 293 8.26e-22 c.69.1.7 79467 2qruA 274 8.79e-22 1j1iA 296 9.27e-22 c.69.1.10 83977 2cjpA 328 9.48e-22 1xqwA 293 9.62e-22 1mj5A 302 1.07e-21 c.69.1.8 91285 1pv1A 299 1.24e-21 c.69.1.34 111639 1a8qA 274 1.27e-21 c.69.1.12 34702 3bf7A 255 1.39e-21 1imjA 210 1.53e-21 c.69.1.23 71246 1y37A 304 1.60e-21 1va4A 279 1.62e-21 c.69.1.12 108458 1hkhA 279 1.82e-21 c.69.1.12 90628 1a8sA 273 2.14e-21 c.69.1.12 34710 1lnsA 763 2.45e-21 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1f0nA 285 2.63e-21 c.69.1.3 34636 1brtA 277 2.72e-21 c.69.1.12 34699 2o2iA 300 3.55e-21 1ehyA 294 3.72e-21 c.69.1.11 34693 2qvbA 297 4.91e-21 1mpxA 615 5.11e-21 b.18.1.13,c.69.1.21 85041,85042 1xklA 273 5.38e-21 c.69.1.20 115410 3bwxA 285 5.56e-21 1tqhA 247 5.88e-21 c.69.1.29 107225 2psdA 318 6.27e-21 1r88A 280 6.70e-21 c.69.1.3 97219 2pblA 262 7.50e-21 1qj4A 257 8.32e-21 c.69.1.20 34796 3c5vA 316 9.68e-21 1r1dA 247 1.09e-20 c.69.1.29 96813 2yysA 286 1.30e-20 1yr2A 741 1.50e-20 1tcaA 317 2.06e-20 c.69.1.17 34726 1qo7A 394 2.14e-20 c.69.1.11 34697 2gzsA 278 4.45e-20 1m33A 258 4.96e-20 c.69.1.26 78514 1ju3A 583 1.84e-19 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 3.22e-19 1cvlA 319 4.02e-19 c.69.1.18 34786 1qlwA 328 1.89e-18 c.69.1.15 34722 1pjaA 302 2.23e-18 c.69.1.13 94758 1tca 317 3.18e-18 1ycdA 243 4.04e-18 1r3dA 264 5.49e-18 c.69.1.35 111680 2q0xA 335 5.70e-18 2ogtA 498 6.53e-18 2rauA 354 6.56e-18 1qe3A 489 1.60e-17 c.69.1.1 34630 3bdvA 191 2.08e-17 2qjwA 176 2.45e-17 1mnaA 298 2.85e-17 c.69.1.22 79322 1ukcA 522 4.81e-17 c.69.1.17 107911 1llfA 534 9.68e-17 c.69.1.17 78094 1ys1X 320 1.29e-16 1ei9A 279 2.03e-16 c.69.1.13 34713 1ea5A 537 2.16e-16 c.69.1.1 34592 1ispA 181 3.20e-16 c.69.1.18 76778 1thgA 544 8.07e-16 c.69.1.17 34763 1cvl 319 8.15e-16 1p0iA 529 8.66e-16 c.69.1.1 93867 2qs9A 194 3.34e-15 1thg 544 3.36e-15 1bu8A 452 5.50e-15 b.12.1.2,c.69.1.19 23647,34795 1hplA 449 1.01e-14 b.12.1.2,c.69.1.19 23639,34787 2px6A 316 1.22e-14 1uxoA 192 1.34e-14 c.69.1.31 108121 1jmkC 230 2.12e-14 c.69.1.22 71747 2bceA 585 2.55e-14 c.69.1.1 34625 2h7cA 542 2.59e-14 c.69.1.1 136207 3bixA 574 2.70e-14 2cb9A 244 1.11e-13 2bce 581 1.30e-13 1thtA 305 2.39e-12 c.69.1.13 34711 1ivyA 452 4.25e-11 c.69.1.5 34654 2dsnA 387 2.25e-10 1ac5A 483 1.59e-07 c.69.1.5 34653 1ku0A 388 6.40e-07 c.69.1.18 72994 1tib 269 7.80e-07 2z5gA 387 9.30e-07 1uwcA 261 1.18e-06 c.69.1.17 100101 1cex 214 5.35e-06 1g66A 207 1.15e-05 c.69.1.30 31329 2d80A 318 1.30e-05 1tibA 269 1.95e-05 c.69.1.17 34738 3tglA 269 5.16e-05 c.69.1.17 34733 1whsA 255 7.45e-05 c.69.1.5 34649 1cexA 214 7.97e-05 c.69.1.30 31285 2d81A 318 0.000116 2czqA 205 0.000460 2oryA 346 0.001206 1edgA 380 0.06156 c.1.8.3 28807 1whsB 153 0.1877 1f0kA 364 1.316 c.87.1.2 35465 2q7xA 326 2.048 1iirA 415 2.252 c.87.1.5 62453 1o9gA 250 3.568 c.66.1.29 86692 1p3dA 475 4.025 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1moq 368 5.304 2z1mA 345 7.026 2f5xA 312 7.301 2h1yA 321 7.381 2df8A 325 7.433 1ooeA 236 7.764 c.2.1.2 87196 2ze7A 253 7.784 2o2zA 323 8.436 1fjhA 257 8.609 c.2.1.2 29870 2p91A 285 8.706 2i49A 429 9.044 2c2nA 339 9.271 1zc6A 305 9.513 c.55.1.5,c.55.1.5 124888,124889 1x1tA 260 9.886 c.2.1.2 121597 2gruA 368 9.96 1tk9A 188 10.03 c.80.1.3 107082 1oxwA 373 10.50 c.19.1.3 87539 1v4vA 376 10.56 c.87.1.3 100313 2qt1A 207 10.91 2d4wA 504 11.58 3b55A 451 11.70 2jepA 395 12.10 2vc7A 314 12.15 1mla 309 13.71 1eziA 228 14.09 c.68.1.13 34512 1mlaA 309 14.66 c.19.1.1,d.58.23.1 31031,39383 2deoA 230 14.88 2cuyA 305 14.99 2yvaA 196 16.06 2yvuA 186 16.16 1y56B 382 16.29 3c86A 328 17.12 2qmoA 220 17.34 2cb0A 333 17.66 1xgkA 352 17.79 c.2.1.2 115286 2gt1A 326 17.84 2e18A 257 18.05 2gasA 307 18.58 3bhnA 236 18.66 1tcvA 287 19.21 1rrmA 386 19.86 e.22.1.2 105081 1ml4A 308 19.98 c.78.1.1,c.78.1.1 79255,79256 1xu9A 286 20.38 c.2.1.2 116052 1bf6A 291 20.56 c.1.9.3 29065 2ppvA 332 20.61 1pswA 348 21.10 c.87.1.7 88287 1e8cA 498 22.94 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2z8xA 617 23.65 2j3hA 345 24.09 1kpgA 287 24.45 c.66.1.18 68735 1bd0A 388 24.48 b.49.2.2,c.1.6.1 26480,28642 2qtwB 546 24.60 1qwjA 229 25.61 c.68.1.13 96478 2bkaA 242 25.66 c.2.1.2 128666 1ja9A 274 26.01 c.2.1.2 62817 2ihtA 573 26.44 2dvzA 314 27.01 2egxA 269 27.05 2i2wA 212 27.81 1eny 268 28.16 1uluA 261 30.16 c.2.1.2 113292 2iyfA 430 30.19 1rzuA 485 30.84 c.87.1.8 105140 1o89A 345 31.03 b.35.1.2,c.2.1.1 92644,92645 1odkA 235 32.19 c.56.2.1 86863 1nhpA 447 32.55 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1i52A 236 32.65 c.68.1.13 61767 1mjnA 179 32.69 c.62.1.1 79210 1eceA 358 32.86 c.1.8.3 28813 1v98A 140 33.11 1i2cA 404 33.56 c.2.1.2 83666 1gu7A 364 33.72 b.35.1.2,c.2.1.1 83321,83322 2h7mA 269 33.94 c.2.1.2 136219 2masA 314 33.99 c.70.1.1 34810 1s3iA 310 34.18 b.46.1.1,c.65.1.1 98435,98436 3cjpA 272 34.26 1y5mA 276 35.02 c.2.1.2 122645 1qorA 327 35.24 b.35.1.2,c.2.1.1 24766,29782 1h72C 296 36.00 d.14.1.5,d.58.26.1 60712,60713 3crrA 323 36.25 2hqbA 296 36.78 4uagA 437 37.21 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1je0A 236 37.40 c.56.2.1 66581 1yoeA 322 37.84 2ac7A 235 37.95 c.56.2.1 126543 2ae2A 260 38.01 c.2.1.2 29945 2ppwA 216 38.77 1wlyA 333 38.79 1vf8A 377 38.84 c.1.8.5,d.26.3.1 120029,120030 2nm0A 253 39.03 3c1oA 321 40.60 2pk3A 321 40.64 1w3iA 293 40.64 c.1.10.1 109152 1i24A 404 40.80 c.2.1.2 83663 1w6uA 302 42.18 c.2.1.2 114288 1hdcA 253 42.37 c.2.1.2 29862 1e6uA 321 42.51 c.2.1.2 29805 2gs8A 317 42.74 1htwA 158 42.94 c.37.1.18 71083 1jx6A 342 43.53 c.93.1.1 67406 2f2sA 406 43.66 1l3iA 192 44.77 c.66.1.22 77676 1f3lA 321 46.46 c.66.1.6 59630 2q62A 247 46.63 2ax4A 198 47.10 1x6vA 630 47.39 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2iyaA 424 48.62 2dtxA 264 49.17 2gouA 365 50.24 2dkfA 431 50.72 2f46A 156 51.05 1geeA 261 51.23 c.2.1.2 90509 1e5kA 201 51.68 c.68.1.8 34578 1hgxA 183 51.98 c.61.1.1 34027 1bu6O 501 52.84 c.55.1.4,c.55.1.4 33499,33500 2d1yA 256 53.27 c.2.1.2 131151 1edtA 271 53.59 c.1.8.5 28993 1chd 203 53.92 2bsxA 253 54.26 c.56.2.1 129128 2jfkA 433 54.47 1qgoA 264 54.89 c.92.1.2 35596 2jfgA 445 55.81 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1wmaA 276 56.45 c.2.1.2 121042 2p5yA 311 56.62 2ffeA 311 57.21 c.143.1.1 133381 2dm6A 333 57.89 b.35.1.2,c.2.1.1 131567,131568 1zmoA 244 58.27 1wkaA 147 58.43 b.51.1.1 120978 1g0oA 283 59.12 c.2.1.2 60181 1iz0A 302 59.17 b.35.1.2,c.2.1.1 83821,83822 1tt7A 330 59.46 b.35.1.2,c.2.1.1 112623,112624 1bdbA 277 59.73 c.2.1.2 29874 2g29A 417 60.31 2cmd 312 60.81 3canA 182 60.95 2ch5A 347 61.65 c.55.1.5,c.55.1.5 130453,130454 1nffA 260 61.96 c.2.1.2 80457 2pocA 367 62.39 3c3dA 311 62.80 1v7zA 260 62.86 c.125.1.1 100488 1nhsA 447 64.08 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ijbA 202 64.38 c.62.1.1 71229 2pezA 179 64.50 2ew8A 249 64.62 c.2.1.2 132447 1ryiA 382 66.17 c.3.1.2,d.16.1.3 118813,118814 1kqpA 271 66.19 c.26.2.1 72883 1j1nA 492 66.34 c.94.1.1 83978 1y8cA 246 66.65 c.66.1.43 116563 1vicA 262 67.05 c.68.1.13 100756 1rttA 193 67.11 c.23.5.4 105098 1rxyA 253 68.14 c.56.2.1 98065 1ne7A 289 68.24 c.124.1.1 91833 1shuX 182 68.25 c.62.1.1 98882 2i87A 364 68.61 2uz1A 563 69.16 1o58A 303 69.59 c.79.1.1 92491 1j7jA 178 70.00 c.61.1.1 84131 1h1nA 305 70.53 c.1.8.3 70855 1vl8A 267 70.57 c.2.1.2 108733 1x1eA 239 70.95 2qpqA 301 71.14 1ir6A 424 71.19 c.107.1.2 71342 2pd6A 264 73.01 2ywuA 181 74.32 1q6zA 528 74.62 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2a5lA 200 74.95 c.23.5.8 126176 2pq6A 482 75.48 2ew2A 316 75.49 2o6lA 170 76.18 1vhwA 253 76.56 c.56.2.1 100706 1e6wA 260 76.58 c.2.1.2 59326 2zf5O 497 77.10 1dtxA 59 77.17 g.8.1.1 44551 1zemA 262 77.84 c.2.1.2 124984 1yb0A 159 77.86 d.118.1.1 122865 1zmtA 254 77.87 c.2.1.2 125363 1gegA 256 77.87 c.2.1.2 29888 2dknA 255 77.88 2c1xA 456 78.13 1kngA 156 79.04 c.47.1.10 72777 2f9sA 151 79.94 c.47.1.10 133168 2fr1A 486 79.96 c.2.1.2,c.2.1.2 133961,133962 2jahA 247 79.99 1xg5A 279 80.47 c.2.1.2 115277 1h1dA 221 80.78 c.66.1.1 83452 1k0fA 277 80.89 c.92.2.2 71974 2odtX 328 81.39 2eihA 343 81.81 1uzmA 247 82.00 c.2.1.2 119811 2qm1A 326 83.34 2hlsA 243 83.37 2e7zA 727 83.99 2yvdA 431 84.01 2gekA 406 85.14 2qsjA 154 85.68 2dvtA 327 86.01 c.1.9.15 131793 1xm7A 195 86.88 d.159.1.8 115473 3b9gA 328 87.08 1ceoA 343 87.78 c.1.8.3 28808 2qsiA 137 88.84 1uu1A 335 88.96 c.67.1.1 99993 2qgqA 304 89.47 3ca8A 266 89.81