# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.42e-25 c.69.1.25 77772 1vlqA 337 2.52e-24 c.69.1.25 108848 1lzlA 323 7.37e-24 c.69.1.2 78306 2z3zA 706 1.29e-23 1u4nA 310 2.35e-23 c.69.1.2 113021 1jkmA 358 2.60e-23 c.69.1.2 34633 2jbwA 386 2.94e-23 2d5lA 706 3.84e-23 1u2eA 289 4.86e-23 2hu5A 582 5.59e-23 b.69.7.2,c.69.1.33 136763,136764 2og1A 286 7.60e-23 2hdwA 367 1.04e-22 1jfrA 262 1.13e-22 c.69.1.16 34724 3b5eA 223 1.40e-22 1b6gA 310 1.50e-22 c.69.1.8 34661 1zd3A 555 1.58e-22 c.108.1.2,c.69.1.11 124930,124931 1orvA 728 1.78e-22 b.70.3.1,c.69.1.24 87354,87355 2puhA 286 2.35e-22 2pujA 286 2.48e-22 2rhwA 283 2.97e-22 1b6g 310 3.49e-22 2b61A 377 3.53e-22 2uz0A 263 3.61e-22 1fj2A 232 3.89e-22 c.69.1.14 34720 2o7rA 338 3.98e-22 2fx5A 258 4.43e-22 2qm0A 275 4.96e-22 1vkhA 273 5.06e-22 c.69.1.32 108662 1bn7A 294 6.55e-22 c.69.1.8 34677 1c4xA 285 8.18e-22 c.69.1.10 34684 2r11A 306 8.27e-22 1h2wA 710 9.06e-22 b.69.7.1,c.69.1.4 76596,76597 1q0rA 298 9.28e-22 c.69.1.28 95508 1zi8A 236 1.05e-21 1jjiA 311 1.05e-21 c.69.1.2 66766 2o2gA 223 1.36e-21 1auoA 218 1.37e-21 c.69.1.14 34716 1hlgA 371 1.38e-21 c.69.1.6 34656 1azwA 313 1.40e-21 c.69.1.7 34658 2bklA 695 1.81e-21 1din 236 1.81e-21 1wm1A 317 1.84e-21 c.69.1.7 109405 1uk8A 282 1.98e-21 c.69.1.10 107907 2fukA 220 2.10e-21 2hm7A 310 2.17e-21 2b20A 403 2.38e-21 b.1.18.20,c.69.1.2 127685,127686 1zoiA 276 2.38e-21 2e3jA 356 2.66e-21 2pl5A 366 2.68e-21 3c8dA 403 3.03e-21 3bdiA 207 3.10e-21 2ocgA 254 3.37e-21 2qmqA 286 3.45e-21 1womA 271 3.59e-21 2i3dA 249 4.21e-21 1k8qA 377 4.21e-21 c.69.1.6 72177 2r8bA 251 4.30e-21 1brt 277 4.61e-21 3bxpA 277 5.01e-21 1wb4A 297 5.36e-21 c.69.1.2 120827 1o6gA 710 6.70e-21 b.69.7.1,c.69.1.4 81087,81088 1ufoA 238 6.81e-21 c.69.1.27 99344 1jjfA 268 6.93e-21 c.69.1.2 66765 2veoA 441 7.06e-21 2qruA 274 7.68e-21 1j1iA 296 8.63e-21 c.69.1.10 83977 1dqzA 280 9.99e-21 c.69.1.3 34638 1xqwA 293 1.07e-20 1mtzA 293 1.12e-20 c.69.1.7 79467 1a8qA 274 1.14e-20 c.69.1.12 34702 3bf7A 255 1.20e-20 1mj5A 302 1.21e-20 c.69.1.8 91285 2cjpA 328 1.32e-20 1hkhA 279 1.57e-20 c.69.1.12 90628 1pv1A 299 1.58e-20 c.69.1.34 111639 1imjA 210 1.60e-20 c.69.1.23 71246 1va4A 279 1.65e-20 c.69.1.12 108458 1y37A 304 1.82e-20 1brtA 277 2.15e-20 c.69.1.12 34699 1a8sA 273 2.18e-20 c.69.1.12 34710 1lnsA 763 2.82e-20 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2o2iA 300 3.62e-20 1f0nA 285 4.04e-20 c.69.1.3 34636 1ehyA 294 4.15e-20 c.69.1.11 34693 1xklA 273 4.70e-20 c.69.1.20 115410 1mpxA 615 4.94e-20 b.18.1.13,c.69.1.21 85041,85042 1tqhA 247 4.98e-20 c.69.1.29 107225 2qvbA 297 5.17e-20 3bwxA 285 5.46e-20 1qj4A 257 5.92e-20 c.69.1.20 34796 3c5vA 316 6.30e-20 2pblA 262 6.45e-20 2psdA 318 6.97e-20 1r1dA 247 9.04e-20 c.69.1.29 96813 1r88A 280 1.05e-19 c.69.1.3 97219 2yysA 286 1.32e-19 1yr2A 741 1.32e-19 1tcaA 317 1.88e-19 c.69.1.17 34726 1qo7A 394 2.02e-19 c.69.1.11 34697 2gzsA 278 4.11e-19 1m33A 258 4.37e-19 c.69.1.26 78514 1ju3A 583 1.87e-18 b.18.1.13,c.69.1.21 67300,67301 1cvlA 319 2.31e-18 c.69.1.18 34786 2hfkA 319 2.68e-18 1qlwA 328 1.13e-17 c.69.1.15 34722 1pjaA 302 2.05e-17 c.69.1.13 94758 1tca 317 2.28e-17 1ycdA 243 2.85e-17 2ogtA 498 3.68e-17 1r3dA 264 3.83e-17 c.69.1.35 111680 2rauA 354 4.54e-17 2q0xA 335 4.88e-17 1qe3A 489 8.73e-17 c.69.1.1 34630 3bdvA 191 1.16e-16 2qjwA 176 1.52e-16 1mnaA 298 1.88e-16 c.69.1.22 79322 1ukcA 522 3.11e-16 c.69.1.17 107911 1llfA 534 4.29e-16 c.69.1.17 78094 1ys1X 320 5.67e-16 1ea5A 537 9.16e-16 c.69.1.1 34592 1ei9A 279 9.95e-16 c.69.1.13 34713 1ispA 181 1.26e-15 c.69.1.18 76778 1cvl 319 3.28e-15 1thgA 544 3.82e-15 c.69.1.17 34763 1p0iA 529 4.19e-15 c.69.1.1 93867 1thg 544 1.57e-14 2qs9A 194 1.89e-14 1bu8A 452 3.22e-14 b.12.1.2,c.69.1.19 23647,34795 2px6A 316 4.04e-14 1uxoA 192 4.91e-14 c.69.1.31 108121 1hplA 449 6.35e-14 b.12.1.2,c.69.1.19 23639,34787 1jmkC 230 6.75e-14 c.69.1.22 71747 2bceA 585 7.86e-14 c.69.1.1 34625 3bixA 574 8.78e-14 2h7cA 542 9.39e-14 c.69.1.1 136207 2bce 581 4.23e-13 2cb9A 244 4.83e-13 1thtA 305 9.47e-12 c.69.1.13 34711 1ivyA 452 6.20e-11 c.69.1.5 34654 2dsnA 387 8.10e-10 1ac5A 483 2.01e-07 c.69.1.5 34653 1ku0A 388 8.16e-07 c.69.1.18 72994 2z5gA 387 1.20e-06 1tib 269 2.14e-06 1uwcA 261 3.44e-06 c.69.1.17 100101 1cex 214 8.45e-06 1g66A 207 1.44e-05 c.69.1.30 31329 2d80A 318 1.52e-05 1tibA 269 4.18e-05 c.69.1.17 34738 1cexA 214 0.000104 c.69.1.30 31285 3tglA 269 0.000109 c.69.1.17 34733 1whsA 255 0.000132 c.69.1.5 34649 2d81A 318 0.000183 2czqA 205 0.000422 2oryA 346 0.001841 1edgA 380 0.06713 c.1.8.3 28807 1whsB 153 0.1236 1f0kA 364 1.510 c.87.1.2 35465 2q7xA 326 1.790 1iirA 415 3.355 c.87.1.5 62453 1p3dA 475 4.099 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1moq 368 4.968 1o9gA 250 5.252 c.66.1.29 86692 2df8A 325 6.135 2ze7A 253 7.542 2gruA 368 7.699 1ooeA 236 7.813 c.2.1.2 87196 2h1yA 321 7.868 2o2zA 323 8.144 1v4vA 376 8.222 c.87.1.3 100313 2z1mA 345 8.508 1x1tA 260 8.858 c.2.1.2 121597 2f5xA 312 9.622 1tk9A 188 10.65 c.80.1.3 107082 1zc6A 305 10.85 c.55.1.5,c.55.1.5 124888,124889 2c2nA 339 11.06 2qt1A 207 11.13 2deoA 230 11.13 1fjhA 257 12.31 c.2.1.2 29870 1oxwA 373 12.31 c.19.1.3 87539 1e8cA 498 12.65 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2jepA 395 12.66 2cb0A 333 12.75 2p91A 285 12.90 1eziA 228 12.95 c.68.1.13 34512 2vc7A 314 13.09 1y56B 382 13.50 2gasA 307 14.00 2qmoA 220 14.23 2i49A 429 14.29 1xgkA 352 14.41 c.2.1.2 115286 1tcvA 287 14.45 2yvaA 196 15.00 2d4wA 504 15.01 2gt1A 326 15.50 2cuyA 305 16.57 1xu9A 286 16.82 c.2.1.2 116052 1ml4A 308 17.54 c.78.1.1,c.78.1.1 79255,79256 1mla 309 18.18 3c86A 328 18.23 1rrmA 386 18.43 e.22.1.2 105081 1pswA 348 18.47 c.87.1.7 88287 3b55A 451 18.57 1gu7A 364 18.75 b.35.1.2,c.2.1.1 83321,83322 2ppvA 332 18.80 2e18A 257 18.81 1mlaA 309 19.21 c.19.1.1,d.58.23.1 31031,39383 2yvuA 186 19.47 1ja9A 274 20.47 c.2.1.2 62817 1kpgA 287 20.60 c.66.1.18 68735 3bhnA 236 20.67 2ihtA 573 20.74 1eny 268 20.77 1bf6A 291 22.06 c.1.9.3 29065 2i2wA 212 24.25 2qtwB 546 25.14 2z8xA 617 25.75 1qwjA 229 25.95 c.68.1.13 96478 2h7mA 269 26.14 c.2.1.2 136219 2masA 314 26.21 c.70.1.1 34810 2egxA 269 27.08 2iyfA 430 27.26 1mjnA 179 27.47 c.62.1.1 79210 2j3hA 345 28.06 1yoeA 322 28.23 1bd0A 388 28.32 b.49.2.2,c.1.6.1 26480,28642 1y5mA 276 29.67 c.2.1.2 122645 1uluA 261 30.16 c.2.1.2 113292 2hqbA 296 30.24 4uagA 437 30.25 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1je0A 236 30.40 c.56.2.1 66581 1i52A 236 30.66 c.68.1.13 61767 3crrA 323 32.71 2ac7A 235 33.24 c.56.2.1 126543 1htwA 158 33.49 c.37.1.18 71083 1eceA 358 33.69 c.1.8.3 28813 2ppwA 216 34.18 3c1oA 321 34.44 1edtA 271 34.58 c.1.8.5 28993 2q62A 247 34.88 2ae2A 260 35.08 c.2.1.2 29945 2uz1A 563 35.55 1w3iA 293 35.72 c.1.10.1 109152 1nhpA 447 36.77 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1v98A 140 37.00 1hdcA 253 38.03 c.2.1.2 29862 1odkA 235 38.31 c.56.2.1 86863 1jx6A 342 38.33 c.93.1.1 67406 3cjpA 272 38.40 1w6uA 302 38.67 c.2.1.2 114288 2nm0A 253 39.38 3c3dA 311 39.51 1bdbA 277 39.67 c.2.1.2 29874 2bsxA 253 40.29 c.56.2.1 129128 2jfgA 445 41.30 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2dvzA 314 41.31 2bkaA 242 41.58 c.2.1.2 128666 1rzuA 485 41.81 c.87.1.8 105140 1i2cA 404 42.34 c.2.1.2 83666 2gouA 365 42.88 1e6uA 321 43.05 c.2.1.2 29805 1s3iA 310 44.17 b.46.1.1,c.65.1.1 98435,98436 2pk3A 321 45.41 1wlyA 333 45.48 1i24A 404 46.30 c.2.1.2 83663 1geeA 261 46.43 c.2.1.2 90509 2pocA 367 47.16 2iyaA 424 47.91 2ffeA 311 48.07 c.143.1.1 133381 1qorA 327 48.13 b.35.1.2,c.2.1.1 24766,29782 1vf8A 377 48.59 c.1.8.5,d.26.3.1 120029,120030 2dtxA 264 48.88 2p5yA 311 50.67 2gf3A 389 51.08 c.3.1.2,d.16.1.3 135070,135071 1ir6A 424 51.22 c.107.1.2 71342 1o89A 345 51.78 b.35.1.2,c.2.1.1 92644,92645 2d1yA 256 51.81 c.2.1.2 131151 1iz0A 302 52.08 b.35.1.2,c.2.1.1 83821,83822 1e5kA 201 52.47 c.68.1.8 34578 2ax4A 198 52.72 2ew2A 316 52.94 1ne7A 289 53.21 c.124.1.1 91833 2f2sA 406 53.24 2f46A 156 53.39 1q6zA 528 53.93 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1kqpA 271 54.23 c.26.2.1 72883 2dkfA 431 54.23 2gs8A 317 54.49 1gegA 256 55.26 c.2.1.2 29888 1ijbA 202 55.41 c.62.1.1 71229 1v7zA 260 55.49 c.125.1.1 100488 2eihA 343 56.20 1bdb 277 56.35 1h72C 296 57.05 d.14.1.5,d.58.26.1 60712,60713 1chd 203 58.32 1nffA 260 58.50 c.2.1.2 80457 1wmaA 276 58.77 c.2.1.2 121042 2ew8A 249 59.13 c.2.1.2 132447 2g29A 417 59.24 1g0oA 283 59.25 c.2.1.2 60181 1l3iA 192 59.69 c.66.1.22 77676 2pezA 179 60.39 1vicA 262 60.52 c.68.1.13 100756 3canA 182 60.87 1qgoA 264 60.89 c.92.1.2 35596 1bu6O 501 60.98 c.55.1.4,c.55.1.4 33499,33500 1nhsA 447 61.16 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1zmoA 244 61.47 2cmd 312 61.57 2ch5A 347 61.61 c.55.1.5,c.55.1.5 130453,130454 1f3lA 321 61.76 c.66.1.6 59630 2pd6A 264 62.35 1x1eA 239 62.48 1h1nA 305 63.68 c.1.8.3 70855 1rttA 193 64.01 c.23.5.4 105098 1vl8A 267 64.44 c.2.1.2 108733 2fr1A 486 65.21 c.2.1.2,c.2.1.2 133961,133962 3b9gA 328 65.30 1shuX 182 65.47 c.62.1.1 98882 1yb0A 159 65.66 d.118.1.1 122865 2dm6A 333 66.52 b.35.1.2,c.2.1.1 131567,131568 1oi7A 288 66.59 c.2.1.8,c.23.4.1 87049,87050 1xm7A 195 66.99 d.159.1.8 115473 2p8jA 209 67.04 1y8cA 246 67.11 c.66.1.43 116563 2c1xA 456 67.68 1x6vA 630 68.28 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1wkaA 147 68.85 b.51.1.1 120978 1hgxA 183 69.36 c.61.1.1 34027 1a7jA 290 70.79 c.37.1.6 31952 1rxyA 253 70.83 c.56.2.1 98065 2a5lA 200 72.16 c.23.5.8 126176 2qpqA 301 72.32 1vhwA 253 72.67 c.56.2.1 100706 1zmtA 254 73.65 c.2.1.2 125363 1x7gA 261 73.97 c.2.1.2 114929 1kngA 156 74.81 c.47.1.10 72777 1h1dA 221 75.81 c.66.1.1 83452 1zemA 262 76.42 c.2.1.2 124984 1tt7A 330 77.09 b.35.1.2,c.2.1.1 112623,112624 2e5fA 325 77.50 2i5eA 211 77.67 1j7jA 178 78.04 c.61.1.1 84131 1mf7A 194 78.06 c.62.1.1 84937 1e6wA 260 78.56 c.2.1.2 59326 2b9wA 424 79.67 1xttA 216 80.10 c.61.1.1 122300 2jahA 247 80.49 4pgaA 337 81.55 c.88.1.1 35565 2bllA 345 81.67 c.2.1.2 128733 1uzmA 247 81.84 c.2.1.2 119811 1tvnA 293 82.22 c.1.8.3 119360 2i87A 364 82.30 2o6lA 170 83.42 3ch7A 266 85.30 2cfcA 250 85.66 2zf5O 497 86.01 1ceoA 343 86.68 c.1.8.3 28808 2gekA 406 86.97 1ryiA 382 87.53 c.3.1.2,d.16.1.3 118813,118814 1k2wA 256 88.25 c.2.1.2 90927 2pptA 155 89.40 1k0fA 277 89.41 c.92.2.2 71974 2acvA 463 89.50 2pq6A 482 89.54 3co4A 312 89.70