# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 6.55e-26 c.69.1.25 77772 1vlqA 337 4.10e-25 c.69.1.25 108848 1lzlA 323 1.05e-24 c.69.1.2 78306 2z3zA 706 2.50e-24 1jkmA 358 4.11e-24 c.69.1.2 34633 1u4nA 310 5.53e-24 c.69.1.2 113021 2jbwA 386 6.20e-24 2d5lA 706 6.72e-24 2hu5A 582 1.25e-23 b.69.7.2,c.69.1.33 136763,136764 1u2eA 289 1.59e-23 2og1A 286 2.16e-23 3b5eA 223 2.83e-23 1jfrA 262 3.03e-23 c.69.1.16 34724 2hdwA 367 3.04e-23 1orvA 728 4.01e-23 b.70.3.1,c.69.1.24 87354,87355 1zd3A 555 4.59e-23 c.108.1.2,c.69.1.11 124930,124931 1b6gA 310 4.66e-23 c.69.1.8 34661 2o7rA 338 7.26e-23 2b61A 377 7.50e-23 1fj2A 232 7.55e-23 c.69.1.14 34720 2pujA 286 7.77e-23 2uz0A 263 8.15e-23 2puhA 286 9.29e-23 1b6g 310 9.74e-23 2rhwA 283 9.80e-23 2fx5A 258 1.07e-22 2qm0A 275 1.07e-22 1vkhA 273 1.61e-22 c.69.1.32 108662 1jjiA 311 1.76e-22 c.69.1.2 66766 1bn7A 294 1.88e-22 c.69.1.8 34677 1h2wA 710 1.94e-22 b.69.7.1,c.69.1.4 76596,76597 2r11A 306 2.08e-22 1zi8A 236 2.12e-22 1c4xA 285 2.23e-22 c.69.1.10 34684 1q0rA 298 2.47e-22 c.69.1.28 95508 1auoA 218 3.15e-22 c.69.1.14 34716 2o2gA 223 3.40e-22 1hlgA 371 3.47e-22 c.69.1.6 34656 2bklA 695 3.86e-22 1azwA 313 3.89e-22 c.69.1.7 34658 1din 236 4.12e-22 1uk8A 282 4.61e-22 c.69.1.10 107907 2hm7A 310 4.95e-22 1wm1A 317 5.26e-22 c.69.1.7 109405 2fukA 220 6.03e-22 2pl5A 366 6.39e-22 3c8dA 403 7.17e-22 2b20A 403 7.44e-22 b.1.18.20,c.69.1.2 127685,127686 3bdiA 207 7.98e-22 2qmqA 286 8.53e-22 2r8bA 251 8.80e-22 1zoiA 276 9.12e-22 2e3jA 356 9.75e-22 2ocgA 254 1.01e-21 1k8qA 377 1.14e-21 c.69.1.6 72177 3bxpA 277 1.15e-21 1womA 271 1.15e-21 2i3dA 249 1.27e-21 1wb4A 297 1.47e-21 c.69.1.2 120827 1dqzA 280 1.58e-21 c.69.1.3 34638 2veoA 441 1.60e-21 1ufoA 238 1.60e-21 c.69.1.27 99344 1o6gA 710 1.67e-21 b.69.7.1,c.69.1.4 81087,81088 1brt 277 1.76e-21 1jjfA 268 1.80e-21 c.69.1.2 66765 1j1iA 296 2.26e-21 c.69.1.10 83977 3bf7A 255 2.87e-21 2cjpA 328 3.03e-21 1xqwA 293 3.03e-21 2qruA 274 3.07e-21 1mtzA 293 3.14e-21 c.69.1.7 79467 1mj5A 302 3.34e-21 c.69.1.8 91285 1pv1A 299 4.14e-21 c.69.1.34 111639 1y37A 304 4.73e-21 1a8qA 274 4.73e-21 c.69.1.12 34702 1hkhA 279 6.03e-21 c.69.1.12 90628 1imjA 210 6.15e-21 c.69.1.23 71246 1va4A 279 7.45e-21 c.69.1.12 108458 1lnsA 763 7.76e-21 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1f0nA 285 8.57e-21 c.69.1.3 34636 1a8sA 273 8.66e-21 c.69.1.12 34710 1brtA 277 9.55e-21 c.69.1.12 34699 2o2iA 300 9.81e-21 1ehyA 294 1.05e-20 c.69.1.11 34693 1mpxA 615 1.29e-20 b.18.1.13,c.69.1.21 85041,85042 2qvbA 297 1.36e-20 1xklA 273 1.52e-20 c.69.1.20 115410 1tqhA 247 1.71e-20 c.69.1.29 107225 2pblA 262 1.76e-20 3bwxA 285 2.02e-20 1qj4A 257 2.06e-20 c.69.1.20 34796 2psdA 318 2.06e-20 1r88A 280 2.43e-20 c.69.1.3 97219 3c5vA 316 2.47e-20 1r1dA 247 3.68e-20 c.69.1.29 96813 1yr2A 741 4.10e-20 1tcaA 317 4.39e-20 c.69.1.17 34726 2yysA 286 5.43e-20 1qo7A 394 5.90e-20 c.69.1.11 34697 2gzsA 278 1.11e-19 1m33A 258 1.43e-19 c.69.1.26 78514 1ju3A 583 5.99e-19 b.18.1.13,c.69.1.21 67300,67301 1cvlA 319 7.94e-19 c.69.1.18 34786 2hfkA 319 1.04e-18 1qlwA 328 4.13e-18 c.69.1.15 34722 1tca 317 5.26e-18 1pjaA 302 7.92e-18 c.69.1.13 94758 1ycdA 243 9.69e-18 2ogtA 498 1.22e-17 2q0xA 335 1.44e-17 1r3dA 264 1.56e-17 c.69.1.35 111680 2rauA 354 1.59e-17 1qe3A 489 3.03e-17 c.69.1.1 34630 3bdvA 191 4.98e-17 2qjwA 176 6.35e-17 1mnaA 298 8.32e-17 c.69.1.22 79322 1ukcA 522 1.31e-16 c.69.1.17 107911 1llfA 534 1.96e-16 c.69.1.17 78094 1ys1X 320 3.44e-16 1ea5A 537 3.55e-16 c.69.1.1 34592 1ei9A 279 4.32e-16 c.69.1.13 34713 1ispA 181 7.25e-16 c.69.1.18 76778 1p0iA 529 1.46e-15 c.69.1.1 93867 1cvl 319 1.51e-15 1thgA 544 1.73e-15 c.69.1.17 34763 1thg 544 4.78e-15 2qs9A 194 6.97e-15 1bu8A 452 1.38e-14 b.12.1.2,c.69.1.19 23647,34795 2px6A 316 2.47e-14 1hplA 449 2.78e-14 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 2.80e-14 c.69.1.31 108121 2bceA 585 3.92e-14 c.69.1.1 34625 2h7cA 542 4.12e-14 c.69.1.1 136207 1jmkC 230 4.42e-14 c.69.1.22 71747 3bixA 574 4.44e-14 2bce 581 2.15e-13 2cb9A 244 2.25e-13 1thtA 305 5.28e-12 c.69.1.13 34711 1ivyA 452 4.64e-11 c.69.1.5 34654 2dsnA 387 2.40e-10 1ac5A 483 1.60e-07 c.69.1.5 34653 1ku0A 388 5.00e-07 c.69.1.18 72994 2z5gA 387 7.54e-07 1tib 269 1.34e-06 1uwcA 261 1.62e-06 c.69.1.17 100101 1cex 214 6.46e-06 2d80A 318 1.24e-05 1g66A 207 1.50e-05 c.69.1.30 31329 1tibA 269 3.36e-05 c.69.1.17 34738 1cexA 214 8.38e-05 c.69.1.30 31285 3tglA 269 8.79e-05 c.69.1.17 34733 2d81A 318 0.000115 1whsA 255 0.000117 c.69.1.5 34649 2czqA 205 0.000425 2oryA 346 0.001233 1edgA 380 0.05612 c.1.8.3 28807 1whsB 153 0.1801 2q7xA 326 0.9363 1f0kA 364 1.465 c.87.1.2 35465 1iirA 415 2.819 c.87.1.5 62453 1p3dA 475 3.928 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1moq 368 4.658 1o9gA 250 4.862 c.66.1.29 86692 2o2zA 323 6.617 2c2nA 339 6.720 2gruA 368 7.113 2df8A 325 7.818 2ze7A 253 7.828 2h1yA 321 7.850 2z1mA 345 7.898 2f5xA 312 8.318 1ooeA 236 9.311 c.2.1.2 87196 1v4vA 376 9.450 c.87.1.3 100313 2d4wA 504 9.803 2qt1A 207 10.69 2p91A 285 10.96 2i49A 429 11.24 2gasA 307 11.31 3b55A 451 11.36 1tk9A 188 11.38 c.80.1.3 107082 1oxwA 373 11.63 c.19.1.3 87539 1zc6A 305 11.74 c.55.1.5,c.55.1.5 124888,124889 1x1tA 260 11.88 c.2.1.2 121597 2vc7A 314 12.12 2jepA 395 12.38 2ppvA 332 12.79 1y56B 382 13.07 1xgkA 352 13.33 c.2.1.2 115286 1e8cA 498 13.78 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2cuyA 305 14.35 2qmoA 220 14.77 1eziA 228 14.88 c.68.1.13 34512 2gt1A 326 15.16 1fjhA 257 15.46 c.2.1.2 29870 2yvaA 196 16.40 1rrmA 386 16.48 e.22.1.2 105081 1bf6A 291 16.69 c.1.9.3 29065 1mla 309 17.19 2yvuA 186 17.65 1mlaA 309 17.72 c.19.1.1,d.58.23.1 31031,39383 3c86A 328 17.79 1tcvA 287 17.87 2ihtA 573 19.35 2e18A 257 19.38 2z8xA 617 19.99 3bhnA 236 20.40 1kpgA 287 20.42 c.66.1.18 68735 2cb0A 333 20.75 1gu7A 364 21.19 b.35.1.2,c.2.1.1 83321,83322 2deoA 230 21.34 1ml4A 308 21.63 c.78.1.1,c.78.1.1 79255,79256 2qtwB 546 24.12 1pswA 348 24.92 c.87.1.7 88287 2i2wA 212 25.19 1mjnA 179 25.53 c.62.1.1 79210 1ja9A 274 26.31 c.2.1.2 62817 1xu9A 286 26.90 c.2.1.2 116052 2gouA 365 27.13 1nhpA 447 27.75 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2iyfA 430 27.84 1bd0A 388 28.25 b.49.2.2,c.1.6.1 26480,28642 1e6uA 321 29.62 c.2.1.2 29805 1je0A 236 29.81 c.56.2.1 66581 2j3hA 345 30.37 1eny 268 31.04 1rzuA 485 31.28 c.87.1.8 105140 1qorA 327 31.47 b.35.1.2,c.2.1.1 24766,29782 1w3iA 293 31.49 c.1.10.1 109152 1h72C 296 31.61 d.14.1.5,d.58.26.1 60712,60713 1qwjA 229 31.89 c.68.1.13 96478 1i2cA 404 33.80 c.2.1.2 83666 1yoeA 322 33.94 2masA 314 34.14 c.70.1.1 34810 1eceA 358 34.54 c.1.8.3 28813 1jx6A 342 35.07 c.93.1.1 67406 1o89A 345 36.66 b.35.1.2,c.2.1.1 92644,92645 1v98A 140 36.74 3c1oA 321 36.77 2ac7A 235 37.39 c.56.2.1 126543 3cjpA 272 37.98 1y5mA 276 38.00 c.2.1.2 122645 2bllA 345 38.04 c.2.1.2 128733 3crrA 323 38.15 2bkaA 242 38.45 c.2.1.2 128666 2gs8A 317 38.75 1i52A 236 39.67 c.68.1.13 61767 1bu6O 501 40.43 c.55.1.4,c.55.1.4 33499,33500 4uagA 437 40.76 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2ae2A 260 41.10 c.2.1.2 29945 1uluA 261 41.16 c.2.1.2 113292 2iyaA 424 41.26 1htwA 158 42.00 c.37.1.18 71083 2f2sA 406 42.03 1edtA 271 42.47 c.1.8.5 28993 2q62A 247 42.64 2dkfA 431 42.68 2h7mA 269 42.76 c.2.1.2 136219 2nm0A 253 44.25 2ew2A 316 44.84 2pk3A 321 45.03 1i24A 404 45.45 c.2.1.2 83663 2ppwA 216 45.74 1odkA 235 46.03 c.56.2.1 86863 2egxA 269 46.61 2ffeA 311 47.62 c.143.1.1 133381 2p5yA 311 47.81 2jfkA 433 47.84 2bsxA 253 47.87 c.56.2.1 129128 2dvzA 314 47.92 1ijbA 202 48.26 c.62.1.1 71229 3c3dA 311 48.27 1x6vA 630 48.72 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2hqbA 296 49.27 1s3iA 310 49.89 b.46.1.1,c.65.1.1 98435,98436 1nhsA 447 50.06 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1hdcA 253 50.47 c.2.1.2 29862 2uz1A 563 51.32 2pocA 367 54.00 1l3iA 192 54.02 c.66.1.22 77676 2f46A 156 54.37 2b9wA 424 54.37 3canA 182 55.31 2jfgA 445 55.82 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1w6uA 302 56.26 c.2.1.2 114288 2i87A 364 56.53 2zf5O 497 56.65 2eihA 343 58.05 1iz0A 302 58.06 b.35.1.2,c.2.1.1 83821,83822 1e5kA 201 58.23 c.68.1.8 34578 1rxyA 253 58.47 c.56.2.1 98065 2dtxA 264 59.11 1geeA 261 59.28 c.2.1.2 90509 1q6zA 528 59.61 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1y8cA 246 60.05 c.66.1.43 116563 1kqpA 271 60.66 c.26.2.1 72883 1vf8A 377 60.67 c.1.8.5,d.26.3.1 120029,120030 1k0fA 277 61.49 c.92.2.2 71974 1f3lA 321 61.96 c.66.1.6 59630 1tt7A 330 63.51 b.35.1.2,c.2.1.1 112623,112624 1wlyA 333 63.81 2dm6A 333 65.38 b.35.1.2,c.2.1.1 131567,131568 1v7zA 260 65.79 c.125.1.1 100488 1vhwA 253 66.40 c.56.2.1 100706 1chd 203 66.67 1yb0A 159 67.28 d.118.1.1 122865 2d1yA 256 67.54 c.2.1.2 131151 1hgxA 183 67.60 c.61.1.1 34027 1oi7A 288 67.79 c.2.1.8,c.23.4.1 87049,87050 1zmoA 244 68.67 2fr1A 486 68.67 c.2.1.2,c.2.1.2 133961,133962 3cdxA 354 68.81 2cmd 312 69.25 1qgoA 264 69.91 c.92.1.2 35596 2c1xA 456 70.08 2p3rA 510 70.60 c.55.1.4,c.55.1.4 139471,139472 1wkaA 147 71.44 b.51.1.1 120978 2q7dA 346 72.64 1wmaA 276 73.62 c.2.1.2 121042 2ch5A 347 73.80 c.55.1.5,c.55.1.5 130453,130454 3b9gA 328 74.04 1e6wA 260 74.28 c.2.1.2 59326 1uu1A 335 74.34 c.67.1.1 99993 1ne7A 289 74.41 c.124.1.1 91833 1xm7A 195 74.63 d.159.1.8 115473 2ax4A 198 74.78 1bdbA 277 74.95 c.2.1.2 29874 1o7jA 327 75.42 c.88.1.1 81140 1shuX 182 75.65 c.62.1.1 98882 1rttA 193 76.17 c.23.5.4 105098 2qm1A 326 76.34 2g29A 417 76.75 2pq6A 482 77.04 1vicA 262 77.23 c.68.1.13 100756 2c07A 285 78.12 c.2.1.2 129577 1nffA 260 78.24 c.2.1.2 80457 1j7jA 178 79.03 c.61.1.1 84131 2odtX 328 79.06 2gf3A 389 79.11 c.3.1.2,d.16.1.3 135070,135071 1g0oA 283 80.01 c.2.1.2 60181 2o6lA 170 80.03 1ir6A 424 81.24 c.107.1.2 71342 3ca8A 266 81.86 1h1dA 221 82.33 c.66.1.1 83452 1h1nA 305 82.73 c.1.8.3 70855 1ryiA 382 83.48 c.3.1.2,d.16.1.3 118813,118814 1x1eA 239 84.16 1fmcA 255 84.22 c.2.1.2 29856 1tvnA 293 84.34 c.1.8.3 119360 1kngA 156 84.52 c.47.1.10 72777 3cs3A 277 85.19 2pptA 155 85.37 2am1A 454 87.05 1y44A 320 87.24 d.157.1.7 122608 1xg5A 279 87.41 c.2.1.2 115277 1zemA 262 87.50 c.2.1.2 124984 2qpqA 301 87.87 1hl2A 297 88.39 c.1.10.1 83581 1zmtA 254 88.74 c.2.1.2 125363 1ceoA 343 89.82 c.1.8.3 28808