# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 5.64e-20 c.69.1.25 77772 1u4nA 310 5.28e-19 c.69.1.2 113021 1vlqA 337 5.35e-19 c.69.1.25 108848 2z3zA 706 9.84e-19 1lzlA 323 1.42e-18 c.69.1.2 78306 2d5lA 706 1.64e-18 1jkmA 358 2.40e-18 c.69.1.2 34633 2o7rA 338 2.50e-18 1u2eA 289 2.96e-18 2hdwA 367 3.18e-18 2og1A 286 3.36e-18 2hu5A 582 4.02e-18 b.69.7.2,c.69.1.33 136763,136764 2rhwA 283 4.37e-18 2pujA 286 4.89e-18 1jfrA 262 5.08e-18 c.69.1.16 34724 3b5eA 223 5.36e-18 2puhA 286 5.60e-18 1fj2A 232 6.30e-18 c.69.1.14 34720 1q0rA 298 7.24e-18 c.69.1.28 95508 1b6gA 310 8.61e-18 c.69.1.8 34661 2b61A 377 9.33e-18 1c4xA 285 9.54e-18 c.69.1.10 34684 1zi8A 236 1.00e-17 1orvA 728 1.02e-17 b.70.3.1,c.69.1.24 87354,87355 1zd3A 555 1.11e-17 c.108.1.2,c.69.1.11 124930,124931 2r11A 306 1.28e-17 1uk8A 282 1.32e-17 c.69.1.10 107907 2jbwA 386 1.39e-17 2i3dA 249 1.39e-17 1bn7A 294 1.44e-17 c.69.1.8 34677 1k8qA 377 1.73e-17 c.69.1.6 72177 2fx5A 258 1.79e-17 1hlgA 371 1.87e-17 c.69.1.6 34656 2qm0A 275 2.05e-17 2o2gA 223 2.12e-17 1b6g 310 2.15e-17 1din 236 2.16e-17 2uz0A 263 2.18e-17 3bdiA 207 2.60e-17 1vkhA 273 2.64e-17 c.69.1.32 108662 2ocgA 254 2.68e-17 1auoA 218 3.01e-17 c.69.1.14 34716 1azwA 313 3.28e-17 c.69.1.7 34658 1womA 271 3.49e-17 3bxpA 277 3.77e-17 1ufoA 238 3.90e-17 c.69.1.27 99344 2pl5A 366 4.18e-17 2e3jA 356 4.46e-17 1j1iA 296 4.99e-17 c.69.1.10 83977 1wm1A 317 6.01e-17 c.69.1.7 109405 2hm7A 310 6.02e-17 1zoiA 276 6.76e-17 1jjfA 268 7.20e-17 c.69.1.2 66765 2fukA 220 8.49e-17 1imjA 210 8.54e-17 c.69.1.23 71246 2qruA 274 8.80e-17 1f0nA 285 1.01e-16 c.69.1.3 34636 1brt 277 1.04e-16 1xqwA 293 1.26e-16 2cjpA 328 1.28e-16 1mtzA 293 1.32e-16 c.69.1.7 79467 1jjiA 311 1.32e-16 c.69.1.2 66766 1a8sA 273 1.39e-16 c.69.1.12 34710 2r8bA 251 1.85e-16 1a8qA 274 1.90e-16 c.69.1.12 34702 3bf7A 255 1.90e-16 1va4A 279 2.12e-16 c.69.1.12 108458 2veoA 441 2.21e-16 2qmqA 286 2.63e-16 3bwxA 285 3.12e-16 1hkhA 279 3.23e-16 c.69.1.12 90628 1pv1A 299 3.33e-16 c.69.1.34 111639 1wb4A 297 3.35e-16 c.69.1.2 120827 1mj5A 302 3.49e-16 c.69.1.8 91285 1y37A 304 3.81e-16 3c8dA 403 4.10e-16 1brtA 277 4.14e-16 c.69.1.12 34699 1r1dA 247 4.87e-16 c.69.1.29 96813 1xklA 273 5.42e-16 c.69.1.20 115410 1ehyA 294 6.12e-16 c.69.1.11 34693 1mpxA 615 6.40e-16 b.18.1.13,c.69.1.21 85041,85042 2b20A 403 6.66e-16 b.1.18.20,c.69.1.2 127685,127686 2pblA 262 6.66e-16 2bklA 695 7.82e-16 2yysA 286 8.66e-16 1tqhA 247 9.23e-16 c.69.1.29 107225 3c5vA 316 9.52e-16 2psdA 318 1.01e-15 1h2wA 710 1.03e-15 b.69.7.1,c.69.1.4 76596,76597 1qj4A 257 1.08e-15 c.69.1.20 34796 1r88A 280 1.26e-15 c.69.1.3 97219 1o6gA 710 1.57e-15 b.69.7.1,c.69.1.4 81087,81088 1dqzA 280 1.60e-15 c.69.1.3 34638 2qvbA 297 1.78e-15 2gzsA 278 3.34e-15 2o2iA 300 3.46e-15 1m33A 258 3.72e-15 c.69.1.26 78514 1tcaA 317 3.76e-15 c.69.1.17 34726 1qo7A 394 5.59e-15 c.69.1.11 34697 1ju3A 583 5.82e-15 b.18.1.13,c.69.1.21 67300,67301 1lnsA 763 6.46e-15 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1yr2A 741 1.48e-14 2hfkA 319 2.27e-14 1qlwA 328 3.97e-14 c.69.1.15 34722 1cvlA 319 4.15e-14 c.69.1.18 34786 2rauA 354 5.75e-14 1pjaA 302 6.08e-14 c.69.1.13 94758 1ycdA 243 7.12e-14 2q0xA 335 9.68e-14 3bdvA 191 1.24e-13 1tca 317 1.52e-13 1r3dA 264 1.58e-13 c.69.1.35 111680 2ogtA 498 3.03e-13 1mnaA 298 5.02e-13 c.69.1.22 79322 2qjwA 176 5.06e-13 1qe3A 489 9.54e-13 c.69.1.1 34630 1ispA 181 1.23e-12 c.69.1.18 76778 1ys1X 320 2.51e-12 1ea5A 537 2.87e-12 c.69.1.1 34592 1llfA 534 3.49e-12 c.69.1.17 78094 1ei9A 279 3.99e-12 c.69.1.13 34713 1ukcA 522 6.20e-12 c.69.1.17 107911 1bu8A 452 6.58e-12 b.12.1.2,c.69.1.19 23647,34795 1p0iA 529 7.65e-12 c.69.1.1 93867 1cvl 319 1.03e-11 1hplA 449 1.07e-11 b.12.1.2,c.69.1.19 23639,34787 2qs9A 194 1.09e-11 1thgA 544 1.18e-11 c.69.1.17 34763 2px6A 316 4.82e-11 3bixA 574 5.59e-11 2bceA 585 5.98e-11 c.69.1.1 34625 1uxoA 192 6.40e-11 c.69.1.31 108121 1jmkC 230 7.44e-11 c.69.1.22 71747 1thg 544 7.59e-11 2h7cA 542 1.07e-10 c.69.1.1 136207 2bce 581 2.26e-10 1thtA 305 4.15e-10 c.69.1.13 34711 2cb9A 244 8.94e-10 1ivyA 452 1.47e-08 c.69.1.5 34654 2dsnA 387 6.33e-07 1ac5A 483 4.29e-06 c.69.1.5 34653 2z5gA 387 1.99e-05 2d80A 318 4.67e-05 1ku0A 388 4.67e-05 c.69.1.18 72994 1uwcA 261 8.64e-05 c.69.1.17 100101 1cex 214 0.000179 1tib 269 0.000290 2d81A 318 0.000412 1cexA 214 0.000793 c.69.1.30 31285 2czqA 205 0.000831 3tglA 269 0.001213 c.69.1.17 34733 1g66A 207 0.001456 c.69.1.30 31329 1tibA 269 0.001603 c.69.1.17 34738 1whsA 255 0.002405 c.69.1.5 34649 2oryA 346 0.02100 1edgA 380 0.8620 c.1.8.3 28807 1whsB 153 1.549 1o9gA 250 3.554 c.66.1.29 86692 2cuyA 305 4.952 2c2nA 339 5.507 2h1yA 321 5.604 1iirA 415 5.823 c.87.1.5 62453 1tvnA 293 6.712 c.1.8.3 119360 2i49A 429 6.718 1mla 309 6.734 1mlaA 309 7.125 c.19.1.1,d.58.23.1 31031,39383 1f0kA 364 8.057 c.87.1.2 35465 2f5xA 312 8.409 2dkfA 431 8.521 1x1tA 260 8.725 c.2.1.2 121597 1oxwA 373 9.417 c.19.1.3 87539 1y8cA 246 10.22 c.66.1.43 116563 2jepA 395 10.33 2df8A 325 10.70 2yvdA 431 11.31 1xgkA 352 11.72 c.2.1.2 115286 2qmoA 220 11.90 2ppvA 332 12.06 1kpgA 287 12.53 c.66.1.18 68735 2p91A 285 13.20 2o2zA 323 13.42 1w3iA 293 14.44 c.1.10.1 109152 1fjhA 257 15.96 c.2.1.2 29870 2f9sA 151 16.42 c.47.1.10 133168 1zbqA 327 17.33 c.2.1.2 124862 2gasA 307 17.39 3c86A 328 17.53 1ja9A 274 17.59 c.2.1.2 62817 1moq 368 18.97 2pk3A 321 19.52 3ca8A 266 19.63 2iyfA 430 19.67 1ir6A 424 20.25 c.107.1.2 71342 2ae2A 260 20.57 c.2.1.2 29945 1mjnA 179 20.89 c.62.1.1 79210 2vc7A 314 21.11 1qgoA 264 21.68 c.92.1.2 35596 1h1dA 221 22.41 c.66.1.1 83452 2e7zA 727 22.66 7a3hA 303 22.87 c.1.8.3 28817 2d4wA 504 23.31 1bf6A 291 23.66 c.1.9.3 29065 1ooeA 236 24.04 c.2.1.2 87196 2z8xA 617 24.19 1h72C 296 24.49 d.14.1.5,d.58.26.1 60712,60713 2qtwB 546 25.05 1nm2A 317 25.90 c.19.1.1,d.58.23.1 80654,80655 2pq6A 482 26.30 1pwxA 254 26.53 c.2.1.2 95262 2bogX 286 26.54 1ceoA 343 26.99 c.1.8.3 28808 1byiA 224 27.28 c.37.1.10 32199 2c1xA 456 27.95 1eny 268 28.14 2bllA 345 28.37 c.2.1.2 128733 2cl5A 221 28.62 c.66.1.1 130570 1uluA 261 28.64 c.2.1.2 113292 2p5yA 311 28.72 1v4vA 376 28.81 c.87.1.3 100313 2r6jA 318 29.42 3crrA 323 30.30 1vf8A 377 30.32 c.1.8.5,d.26.3.1 120029,120030 1gl6A 436 30.37 c.37.1.11 70259 2r91A 286 30.85 1sznA 417 31.32 b.71.1.1,c.1.8.1 106162,106163 1cjcA 460 32.01 c.3.1.1,c.4.1.1 30319,30604 1qwjA 229 32.02 c.68.1.13 96478 1bu6O 501 32.69 c.55.1.4,c.55.1.4 33499,33500 1ijbA 202 32.95 c.62.1.1 71229 1fmcA 255 33.07 c.2.1.2 29856 2gs8A 317 33.23 1eziA 228 33.33 c.68.1.13 34512 1vhwA 253 33.81 c.56.2.1 100706 3c1oA 321 34.05 1st9A 143 34.06 c.47.1.10 98987 2qgnA 322 35.61 1pswA 348 35.97 c.87.1.7 88287 1y5mA 276 36.16 c.2.1.2 122645 2dtxA 264 36.20 1e6wA 260 36.89 c.2.1.2 59326 2i7vA 459 37.26 2c5aA 379 37.34 c.2.1.2 129894 1zmoA 244 38.54 1vl8A 267 38.79 c.2.1.2 108733 1x31C 206 38.79 2nuwA 288 38.88 1nffA 260 39.22 c.2.1.2 80457 1zmtA 254 39.74 c.2.1.2 125363 2iyaA 424 40.05 2iv2X 715 40.14 b.52.2.2,c.81.1.1 137714,137715 1l6rA 227 40.16 c.108.1.10 77768 2csuA 457 40.75 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1l3iA 192 41.23 c.66.1.22 77676 3cjpA 272 41.49 2ze7A 253 42.21 1wraA 308 42.27 d.157.1.8 121190 2cmd 312 43.42 3b55A 451 44.51 2yvuA 186 44.54 1xu9A 286 44.58 c.2.1.2 116052 2zf5O 497 45.05 2gruA 368 45.42 1r59O 505 45.58 c.55.1.4,c.55.1.4 111697,111698 2h7mA 269 45.60 c.2.1.2 136219 2ax4A 198 46.22 2g29A 417 46.29 2p4hX 322 46.64 1pt6A 213 47.30 c.62.1.1 95091 2pptA 155 48.87 1udcA 338 49.31 c.2.1.2 29785 1tcvA 287 49.88 1uzmA 247 50.04 c.2.1.2 119811 2gouA 365 50.09 1a5zA 319 50.29 c.2.1.5,d.162.1.1 30181,42148 1i2cA 404 51.04 c.2.1.2 83666 1w6uA 302 51.36 c.2.1.2 114288 1hdcA 253 51.53 c.2.1.2 29862 2r6r1 338 51.62 2z1mA 345 51.83 1zemA 262 52.51 c.2.1.2 124984 1mf7A 194 52.69 c.62.1.1 84937 2ew8A 249 52.80 c.2.1.2 132447 2qt1A 207 53.03 1bdbA 277 53.36 c.2.1.2 29874 1g0oA 283 53.48 c.2.1.2 60181 1i52A 236 53.65 c.68.1.13 61767 1k2wA 256 54.98 c.2.1.2 90927 1xm7A 195 55.07 d.159.1.8 115473 2c0hA 353 56.30 c.1.8.3 129594 2pg9A 337 56.43 2jahA 247 56.52 2d1yA 256 56.73 c.2.1.2 131151 2bgxA 261 56.88 a.20.1.1,d.118.1.1 128504,128505 1byi 224 57.01 2fr1A 486 57.24 c.2.1.2,c.2.1.2 133961,133962 1lqtA 456 58.05 c.3.1.1,c.4.1.1 74198,74199 2qgqA 304 58.20 2p1zA 180 59.02 2qgmA 445 59.42 1h5qA 265 59.51 c.2.1.2 60643 1rrmA 386 59.92 e.22.1.2 105081 2nm0A 253 60.15 2q7xA 326 61.33 2gqwA 408 61.72 1yt8A 539 61.95 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1x1eA 239 62.07 2dknA 255 62.47 2v7pA 310 62.87 3c3pA 210 63.28 2hxvA 360 63.63 c.71.1.2,c.97.1.2 136859,136860 2cb0A 333 63.88 1geeA 261 65.58 c.2.1.2 90509 2jfkA 433 65.60 2p3rA 510 65.79 c.55.1.4,c.55.1.4 139471,139472 1bdb 277 66.00 1gegA 256 66.48 c.2.1.2 29888 3c8uA 208 68.46 1qopA 268 68.53 c.1.2.4 28570 1q6zA 528 68.54 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2dvzA 314 68.57 2pnfA 248 69.07 2amlA 373 69.41 1i24A 404 70.21 c.2.1.2 83663 2qisA 374 70.47 1j9lA 247 70.49 c.106.1.1 62762 2e5fA 325 70.62 2gagC 210 71.55 2o23A 265 71.73 c.2.1.2 138884 2v9dA 343 72.48 1bd0A 388 72.82 b.49.2.2,c.1.6.1 26480,28642 2o6lA 170 72.83 2hq1A 247 72.92 1edtA 271 73.13 c.1.8.5 28993 2bcoA 350 73.99 c.56.5.7 128302 2a4vA 159 74.23 c.47.1.10 126163 3cs3A 277 75.46 1yb1A 272 76.06 c.2.1.2 116599 1yxmA 303 76.47 c.2.1.2 124192 3c6qA 311 76.93 2ekpA 239 77.31 1i60A 278 77.35 c.1.15.4 71118 1m6iA 493 77.92 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1zc6A 305 78.92 c.55.1.5,c.55.1.5 124888,124889 2pzmA 330 79.30 1shuX 182 79.42 c.62.1.1 98882 2hfsA 332 79.82 1moqA 368 80.51 c.80.1.1 35302 2a4kA 263 80.57 c.2.1.2 126156 1qsgA 265 81.86 c.2.1.2 29935 1a7jA 290 82.37 c.37.1.6 31952 2jfnA 285 82.57 2cc0A 195 83.77 c.6.2.3 130209 2am1A 454 83.93 1kfcA 268 84.14 c.1.2.4 77371 2ch5A 347 84.67 c.55.1.5,c.55.1.5 130453,130454 2b1kA 168 85.08 2pgnA 589 86.04 1chd 203 87.27 2pocA 367 87.38 1gs5A 258 87.47 c.73.1.2 70395 2v6gA 364 87.52 2j3hA 345 87.99 1y1pA 342 88.72 c.2.1.2 122550 1o69A 394 88.95 c.67.1.4 92560