# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.09e-25 c.69.1.25 77772 1vlqA 337 1.30e-24 c.69.1.25 108848 1u2eA 289 1.89e-23 2hdwA 367 2.19e-23 1lzlA 323 2.33e-23 c.69.1.2 78306 1u4nA 310 2.69e-23 c.69.1.2 113021 2z3zA 706 2.89e-23 1jkmA 358 3.26e-23 c.69.1.2 34633 2d5lA 706 5.08e-23 2hu5A 582 5.31e-23 b.69.7.2,c.69.1.33 136763,136764 2jbwA 386 6.05e-23 2og1A 286 6.14e-23 1jfrA 262 9.21e-23 c.69.1.16 34724 2pujA 286 9.49e-23 1b6gA 310 1.14e-22 c.69.1.8 34661 2fx5A 258 1.56e-22 3b5eA 223 1.65e-22 2rhwA 283 2.04e-22 2puhA 286 2.11e-22 1orvA 728 2.26e-22 b.70.3.1,c.69.1.24 87354,87355 1zd3A 555 2.32e-22 c.108.1.2,c.69.1.11 124930,124931 2uz0A 263 2.34e-22 2o7rA 338 2.48e-22 1b6g 310 2.92e-22 1q0rA 298 3.15e-22 c.69.1.28 95508 1fj2A 232 3.24e-22 c.69.1.14 34720 2b61A 377 3.25e-22 1c4xA 285 3.36e-22 c.69.1.10 34684 2r11A 306 4.02e-22 1hlgA 371 4.35e-22 c.69.1.6 34656 1bn7A 294 5.28e-22 c.69.1.8 34677 2qm0A 275 6.30e-22 1uk8A 282 6.70e-22 c.69.1.10 107907 1zoiA 276 6.91e-22 1auoA 218 7.36e-22 c.69.1.14 34716 1h2wA 710 8.61e-22 b.69.7.1,c.69.1.4 76596,76597 3bdiA 207 8.75e-22 1k8qA 377 1.01e-21 c.69.1.6 72177 2o2gA 223 1.03e-21 1zi8A 236 1.03e-21 1jjiA 311 1.24e-21 c.69.1.2 66766 1azwA 313 1.24e-21 c.69.1.7 34658 1vkhA 273 1.26e-21 c.69.1.32 108662 2e3jA 356 1.51e-21 1din 236 1.51e-21 2i3dA 249 1.52e-21 1wm1A 317 1.53e-21 c.69.1.7 109405 2pl5A 366 1.58e-21 1j1iA 296 2.11e-21 c.69.1.10 83977 2hm7A 310 2.28e-21 2r8bA 251 2.34e-21 1jjfA 268 2.63e-21 c.69.1.2 66765 2bklA 695 2.65e-21 1brt 277 2.73e-21 2qmqA 286 2.90e-21 1mtzA 293 2.92e-21 c.69.1.7 79467 2fukA 220 3.13e-21 2ocgA 254 3.21e-21 3bxpA 277 3.38e-21 1womA 271 3.67e-21 1ufoA 238 3.78e-21 c.69.1.27 99344 1wb4A 297 4.15e-21 c.69.1.2 120827 2cjpA 328 4.25e-21 1o6gA 710 4.59e-21 b.69.7.1,c.69.1.4 81087,81088 2b20A 403 4.68e-21 b.1.18.20,c.69.1.2 127685,127686 1xqwA 293 4.77e-21 1dqzA 280 5.02e-21 c.69.1.3 34638 2qruA 274 5.26e-21 1imjA 210 6.09e-21 c.69.1.23 71246 2veoA 441 7.26e-21 1hkhA 279 7.29e-21 c.69.1.12 90628 3bf7A 255 7.32e-21 3c8dA 403 8.49e-21 1a8qA 274 8.72e-21 c.69.1.12 34702 1va4A 279 9.76e-21 c.69.1.12 108458 1xklA 273 1.01e-20 c.69.1.20 115410 1pv1A 299 1.03e-20 c.69.1.34 111639 1mj5A 302 1.17e-20 c.69.1.8 91285 1brtA 277 1.28e-20 c.69.1.12 34699 1a8sA 273 1.35e-20 c.69.1.12 34710 3c5vA 316 1.37e-20 1f0nA 285 1.54e-20 c.69.1.3 34636 1lnsA 763 1.73e-20 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1r88A 280 2.04e-20 c.69.1.3 97219 1y37A 304 2.27e-20 1qj4A 257 2.29e-20 c.69.1.20 34796 2o2iA 300 2.71e-20 1ehyA 294 2.90e-20 c.69.1.11 34693 3bwxA 285 3.14e-20 1r1dA 247 3.87e-20 c.69.1.29 96813 2qvbA 297 4.22e-20 1mpxA 615 4.37e-20 b.18.1.13,c.69.1.21 85041,85042 1tqhA 247 6.43e-20 c.69.1.29 107225 1qo7A 394 8.59e-20 c.69.1.11 34697 2psdA 318 9.17e-20 2pblA 262 9.19e-20 2yysA 286 9.60e-20 1yr2A 741 1.14e-19 1tcaA 317 1.49e-19 c.69.1.17 34726 1m33A 258 1.95e-19 c.69.1.26 78514 2gzsA 278 2.87e-19 1ju3A 583 9.29e-19 b.18.1.13,c.69.1.21 67300,67301 1cvlA 319 1.05e-18 c.69.1.18 34786 2hfkA 319 1.25e-18 1pjaA 302 6.59e-18 c.69.1.13 94758 1ycdA 243 1.32e-17 1tca 317 1.52e-17 1qlwA 328 1.80e-17 c.69.1.15 34722 2ogtA 498 2.42e-17 2rauA 354 3.65e-17 1r3dA 264 4.97e-17 c.69.1.35 111680 2q0xA 335 6.02e-17 1mnaA 298 7.14e-17 c.69.1.22 79322 2qjwA 176 1.09e-16 3bdvA 191 1.15e-16 1qe3A 489 1.27e-16 c.69.1.1 34630 1ukcA 522 3.10e-16 c.69.1.17 107911 1ys1X 320 4.76e-16 1ei9A 279 6.74e-16 c.69.1.13 34713 1ea5A 537 7.23e-16 c.69.1.1 34592 1llfA 534 1.02e-15 c.69.1.17 78094 1ispA 181 1.09e-15 c.69.1.18 76778 1cvl 319 1.30e-15 1p0iA 529 2.63e-15 c.69.1.1 93867 2qs9A 194 5.60e-15 1thgA 544 6.77e-15 c.69.1.17 34763 1uxoA 192 2.74e-14 c.69.1.31 108121 1thg 544 3.00e-14 1bu8A 452 3.03e-14 b.12.1.2,c.69.1.19 23647,34795 1hplA 449 4.97e-14 b.12.1.2,c.69.1.19 23639,34787 1jmkC 230 7.17e-14 c.69.1.22 71747 2bceA 585 7.56e-14 c.69.1.1 34625 2h7cA 542 1.01e-13 c.69.1.1 136207 3bixA 574 1.04e-13 2px6A 316 1.22e-13 2bce 581 3.50e-13 2cb9A 244 6.83e-13 1thtA 305 6.13e-12 c.69.1.13 34711 1ivyA 452 9.71e-11 c.69.1.5 34654 2dsnA 387 4.68e-10 1ac5A 483 3.15e-07 c.69.1.5 34653 2z5gA 387 6.30e-07 1ku0A 388 1.68e-06 c.69.1.18 72994 1uwcA 261 1.94e-06 c.69.1.17 100101 1tib 269 2.17e-06 1cex 214 7.58e-06 1g66A 207 1.41e-05 c.69.1.30 31329 2d80A 318 1.75e-05 1tibA 269 4.70e-05 c.69.1.17 34738 1whsA 255 7.61e-05 c.69.1.5 34649 3tglA 269 0.000107 c.69.1.17 34733 1cexA 214 0.000159 c.69.1.30 31285 2czqA 205 0.000339 2d81A 318 0.000340 2oryA 346 0.000863 1edgA 380 0.09583 c.1.8.3 28807 1whsB 153 0.1490 1iirA 415 2.055 c.87.1.5 62453 1f0kA 364 2.600 c.87.1.2 35465 1o9gA 250 2.652 c.66.1.29 86692 1fjhA 257 4.003 c.2.1.2 29870 2q7xA 326 4.669 2c2nA 339 4.997 1ooeA 236 5.554 c.2.1.2 87196 2df8A 325 5.957 1oxwA 373 6.147 c.19.1.3 87539 1moq 368 6.219 2f5xA 312 6.419 1p3dA 475 6.461 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2p91A 285 7.416 1tk9A 188 7.561 c.80.1.3 107082 2ze7A 253 7.760 2deoA 230 7.860 2bkaA 242 9.205 c.2.1.2 128666 2e18A 257 9.229 1x1tA 260 9.374 c.2.1.2 121597 2gruA 368 10.03 2yvuA 186 10.77 1ml4A 308 11.07 c.78.1.1,c.78.1.1 79255,79256 2i49A 429 11.60 2z1mA 345 14.45 2ppwA 216 14.55 2cb0A 333 15.04 1rrmA 386 15.18 e.22.1.2 105081 3b55A 451 15.48 1eziA 228 15.66 c.68.1.13 34512 2cuyA 305 16.18 2qmoA 220 16.29 2vc7A 314 16.33 1mjnA 179 17.01 c.62.1.1 79210 1zc6A 305 17.05 c.55.1.5,c.55.1.5 124888,124889 2yvaA 196 17.14 1tcvA 287 17.62 2o2zA 323 17.69 2h1yA 321 18.10 1y8cA 246 18.67 c.66.1.43 116563 2qt1A 207 18.68 1mla 309 18.77 1bf6A 291 19.92 c.1.9.3 29065 1ja9A 274 20.04 c.2.1.2 62817 1kpgA 287 20.45 c.66.1.18 68735 2dvzA 314 20.62 1xgkA 352 22.81 c.2.1.2 115286 1qwjA 229 22.86 c.68.1.13 96478 2gt1A 326 22.94 1xu9A 286 23.94 c.2.1.2 116052 1mlaA 309 24.10 c.19.1.1,d.58.23.1 31031,39383 3c86A 328 24.65 2dtxA 264 25.00 2z8xA 617 25.02 2ae2A 260 25.30 c.2.1.2 29945 2d4wA 504 25.68 2qtwB 546 25.72 4uagA 437 26.00 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2i2wA 212 26.03 1y56B 382 26.23 1s3iA 310 26.77 b.46.1.1,c.65.1.1 98435,98436 2iyfA 430 28.03 2qpqA 301 28.58 1hdcA 253 28.59 c.2.1.2 29862 1chd 203 28.74 2j3hA 345 28.93 1eny 268 29.98 2dm6A 333 30.50 b.35.1.2,c.2.1.1 131567,131568 1bu6O 501 30.95 c.55.1.4,c.55.1.4 33499,33500 3cjpA 272 30.99 3crrA 323 31.21 2jfkA 433 31.56 2gs8A 317 32.15 1fmcA 255 32.66 c.2.1.2 29856 2h7mA 269 33.90 c.2.1.2 136219 2ppvA 332 36.47 1nffA 260 36.51 c.2.1.2 80457 1i52A 236 36.57 c.68.1.13 61767 2pk3A 321 36.60 2p5yA 311 36.92 2ew8A 249 37.00 c.2.1.2 132447 1zmoA 244 37.72 2g29A 417 37.85 1bd0A 388 37.96 b.49.2.2,c.1.6.1 26480,28642 1v4vA 376 38.63 c.87.1.3 100313 1w6uA 302 39.30 c.2.1.2 114288 1w3iA 293 39.36 c.1.10.1 109152 1zbqA 327 39.54 c.2.1.2 124862 2dknA 255 40.88 2nm0A 253 41.07 1htwA 158 41.14 c.37.1.18 71083 2gasA 307 41.26 1bdbA 277 41.31 c.2.1.2 29874 1vf8A 377 41.86 c.1.8.5,d.26.3.1 120029,120030 1nhpA 447 42.45 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1geeA 261 42.92 c.2.1.2 90509 1uluA 261 43.11 c.2.1.2 113292 1nhsA 447 43.83 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1gegA 256 44.31 c.2.1.2 29888 1kqpA 271 44.43 c.26.2.1 72883 2e5fA 325 44.46 1h72C 296 44.65 d.14.1.5,d.58.26.1 60712,60713 2f2sA 406 45.31 1f3lA 321 45.44 c.66.1.6 59630 1i2cA 404 45.85 c.2.1.2 83666 2jahA 247 46.57 2amlA 373 46.97 1x6vA 630 47.81 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1y5mA 276 48.81 c.2.1.2 122645 1e5kA 201 49.11 c.68.1.8 34578 1yxmA 303 49.13 c.2.1.2 124192 1e8cA 498 49.24 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2jfgA 445 49.51 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2pezA 179 49.62 1tt7A 330 50.17 b.35.1.2,c.2.1.1 112623,112624 2oi2A 292 50.62 1e6wA 260 51.24 c.2.1.2 59326 1spxA 278 51.41 c.2.1.2 98958 2p8uA 478 52.34 2masA 314 52.51 c.70.1.1 34810 2dvtA 327 52.67 c.1.9.15 131793 2cmd 312 52.70 1v98A 140 53.43 1ijbA 202 53.76 c.62.1.1 71229 1jx6A 342 54.23 c.93.1.1 67406 2dkfA 431 54.36 2egxA 269 54.79 1xm7A 195 54.99 d.159.1.8 115473 2dplA 308 55.65 1wxiA 275 55.86 c.26.2.1 121400 1hgxA 183 56.50 c.61.1.1 34027 1pswA 348 56.53 c.87.1.7 88287 2qsiA 137 56.64 2pd6A 264 56.80 1mf7A 194 56.85 c.62.1.1 84937 1ri5A 298 57.74 c.66.1.34 97502 1i24A 404 57.84 c.2.1.2 83663 2yvdA 431 58.89 2qiwA 255 59.12 2ioyA 283 60.03 1xg5A 279 60.25 c.2.1.2 115277 1x7gA 261 60.68 c.2.1.2 114929 2iyaA 424 60.95 1wlyA 333 61.33 1v7zA 260 61.36 c.125.1.1 100488 3bhnA 236 61.65 1bdb 277 61.73 1rxyA 253 61.79 c.56.2.1 98065 2e7zA 727 61.80 2ax4A 198 62.75 1udcA 338 62.80 c.2.1.2 29785 1j1nA 492 63.43 c.94.1.1 83978 1k2wA 256 63.62 c.2.1.2 90927 1uzmA 247 63.84 c.2.1.2 119811 2a5lA 200 63.89 c.23.5.8 126176 1qorA 327 64.33 b.35.1.2,c.2.1.1 24766,29782 3c1oA 321 64.40 2pocA 367 64.99 1wmaA 276 65.50 c.2.1.2 121042 2ac7A 235 65.92 c.56.2.1 126543 2q62A 247 65.95 1g0oA 283 66.07 c.2.1.2 60181 1ne7A 289 66.64 c.124.1.1 91833 2qgqA 304 67.12 1wvgA 359 67.43 c.2.1.2 121339 1zemA 262 67.72 c.2.1.2 124984 2d1yA 256 68.07 c.2.1.2 131151 1q6zA 528 68.55 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2gouA 365 68.68 2j6pA 152 68.84 2uytA 489 69.04 2o6lA 170 69.56 1je0A 236 69.58 c.56.2.1 66581 2a3nA 355 69.70 1rttA 193 70.34 c.23.5.4 105098 2qgnA 322 71.22 2p1zA 180 71.82 1o89A 345 71.90 b.35.1.2,c.2.1.1 92644,92645 2fexA 188 72.17 c.23.16.2 133354 1vkrA 125 72.33 c.44.2.1 108689 1i60A 278 72.36 c.1.15.4 71118 1e6uA 321 72.41 c.2.1.2 29805 1o58A 303 72.52 c.79.1.1 92491 1hxhA 253 72.66 c.2.1.2 76725 2hfsA 332 73.43 8abpA 306 74.36 c.93.1.1 35647 2q0dA 353 74.73 1ir6A 424 74.86 c.107.1.2 71342 2bsxA 253 74.93 c.56.2.1 129128 2o23A 265 75.04 c.2.1.2 138884 1or8A 340 75.07 c.66.1.6 93451 1xahA 354 75.16 5nul 138 76.10 1oroA 213 76.13 c.61.1.1 34093 2yzkA 178 76.99 2fqxA 318 77.46 1dtxA 59 77.56 g.8.1.1 44551 1byi 224 78.03 1vhwA 253 78.83 c.56.2.1 100706 1gl6A 436 79.17 c.37.1.11 70259 1yb0A 159 80.53 d.118.1.1 122865 2zf5O 497 81.00 1ydeA 270 82.32 c.2.1.2 122980 2b9wA 424 83.27 2qm1A 326 83.64 2f82A 450 83.69 2olnA 397 85.27 1m4tA 392 85.29 c.95.1.1,c.95.1.1 78617,78618 3cggA 195 85.31 1zk4A 251 85.35 c.2.1.2 125176 1qsgA 265 86.20 c.2.1.2 29935 2gf3A 389 86.33 c.3.1.2,d.16.1.3 135070,135071 2v74B 346 87.65 1e0cA 271 87.75 c.46.1.2,c.46.1.2 32717,32718 2f46A 156 87.91 1wkaA 147 88.16 b.51.1.1 120978 1zr0B 63 88.75 2cfcA 250 88.83 2fr1A 486 89.70 c.2.1.2,c.2.1.2 133961,133962 2dri 271 89.72 1shuX 182 89.87 c.62.1.1 98882