# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 4.69e-20 c.69.1.25 77772 1vlqA 337 2.00e-19 c.69.1.25 108848 2hu5A 582 1.29e-18 b.69.7.2,c.69.1.33 136763,136764 1lzlA 323 1.72e-18 c.69.1.2 78306 1u2eA 289 2.20e-18 1jkmA 358 3.50e-18 c.69.1.2 34633 1u4nA 310 3.51e-18 c.69.1.2 113021 2og1A 286 4.89e-18 2jbwA 386 5.46e-18 1jfrA 262 6.57e-18 c.69.1.16 34724 2pujA 286 6.77e-18 1b6gA 310 7.89e-18 c.69.1.8 34661 3b5eA 223 8.27e-18 2hdwA 367 8.94e-18 2o7rA 338 8.96e-18 2fx5A 258 1.29e-17 1b6g 310 1.54e-17 2r11A 306 1.61e-17 1orvA 728 1.67e-17 b.70.3.1,c.69.1.24 87354,87355 2uz0A 263 1.79e-17 1jjiA 311 1.83e-17 c.69.1.2 66766 2rhwA 283 1.88e-17 1fj2A 232 1.98e-17 c.69.1.14 34720 1c4xA 285 2.02e-17 c.69.1.10 34684 2puhA 286 2.24e-17 1zd3A 555 2.44e-17 c.108.1.2,c.69.1.11 124930,124931 1auoA 218 2.52e-17 c.69.1.14 34716 1bn7A 294 2.60e-17 c.69.1.8 34677 2qm0A 275 3.04e-17 1vkhA 273 3.09e-17 c.69.1.32 108662 1q0rA 298 3.15e-17 c.69.1.28 95508 1uk8A 282 4.01e-17 c.69.1.10 107907 1hlgA 371 4.20e-17 c.69.1.6 34656 2z3zA 706 4.56e-17 1zi8A 236 4.66e-17 2o2gA 223 4.79e-17 3bdiA 207 4.83e-17 1zoiA 276 4.89e-17 1k8qA 377 4.98e-17 c.69.1.6 72177 2hm7A 310 5.30e-17 2pl5A 366 5.45e-17 1jjfA 268 5.51e-17 c.69.1.2 66765 2i3dA 249 6.33e-17 1din 236 6.98e-17 2b61A 377 7.31e-17 1j1iA 296 8.99e-17 c.69.1.10 83977 1azwA 313 9.09e-17 c.69.1.7 34658 2r8bA 251 9.10e-17 1wm1A 317 9.40e-17 c.69.1.7 109405 3bf7A 255 1.18e-16 3bxpA 277 1.18e-16 2qmqA 286 1.24e-16 2qruA 274 1.26e-16 1brt 277 1.33e-16 1wb4A 297 1.37e-16 c.69.1.2 120827 2fukA 220 1.38e-16 2bklA 695 1.44e-16 2veoA 441 1.52e-16 2d5lA 706 1.59e-16 1womA 271 1.61e-16 1ufoA 238 1.65e-16 c.69.1.27 99344 1tcaA 317 1.85e-16 c.69.1.17 34726 1h2wA 710 1.96e-16 b.69.7.1,c.69.1.4 76596,76597 1mpxA 615 2.08e-16 b.18.1.13,c.69.1.21 85041,85042 1pv1A 299 2.18e-16 c.69.1.34 111639 2ocgA 254 2.28e-16 2cjpA 328 2.29e-16 1a8sA 273 2.65e-16 c.69.1.12 34710 1mj5A 302 2.91e-16 c.69.1.8 91285 1dqzA 280 3.08e-16 c.69.1.3 34638 1hkhA 279 3.12e-16 c.69.1.12 90628 1f0nA 285 3.29e-16 c.69.1.3 34636 2b20A 403 3.33e-16 b.1.18.20,c.69.1.2 127685,127686 1imjA 210 3.51e-16 c.69.1.23 71246 3c8dA 403 3.82e-16 1xklA 273 3.83e-16 c.69.1.20 115410 1va4A 279 3.95e-16 c.69.1.12 108458 1a8qA 274 3.98e-16 c.69.1.12 34702 3c5vA 316 4.12e-16 3bwxA 285 4.26e-16 1r88A 280 4.33e-16 c.69.1.3 97219 1brtA 277 4.75e-16 c.69.1.12 34699 1xqwA 293 4.83e-16 1mtzA 293 5.89e-16 c.69.1.7 79467 1y37A 304 6.28e-16 2o2iA 300 6.75e-16 1r1dA 247 7.52e-16 c.69.1.29 96813 2qvbA 297 1.15e-15 2e3jA 356 1.15e-15 1tqhA 247 1.24e-15 c.69.1.29 107225 2psdA 318 1.44e-15 1ehyA 294 1.75e-15 c.69.1.11 34693 2pblA 262 1.93e-15 1qj4A 257 2.58e-15 c.69.1.20 34796 2yysA 286 2.76e-15 1yr2A 741 3.47e-15 1m33A 258 4.28e-15 c.69.1.26 78514 2gzsA 278 4.41e-15 1qo7A 394 4.97e-15 c.69.1.11 34697 1lnsA 763 7.37e-15 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ju3A 583 9.51e-15 b.18.1.13,c.69.1.21 67300,67301 1cvlA 319 1.63e-14 c.69.1.18 34786 2hfkA 319 2.23e-14 1o6gA 710 4.87e-14 b.69.7.1,c.69.1.4 81087,81088 1pjaA 302 8.74e-14 c.69.1.13 94758 1ycdA 243 9.10e-14 1tca 317 1.51e-13 1qlwA 328 1.70e-13 c.69.1.15 34722 2ogtA 498 2.05e-13 2rauA 354 2.87e-13 2qjwA 176 3.45e-13 1r3dA 264 3.85e-13 c.69.1.35 111680 1mnaA 298 4.26e-13 c.69.1.22 79322 3bdvA 191 4.46e-13 2q0xA 335 4.89e-13 1ukcA 522 9.42e-13 c.69.1.17 107911 1qe3A 489 9.51e-13 c.69.1.1 34630 1ea5A 537 1.79e-12 c.69.1.1 34592 1ys1X 320 1.94e-12 1ei9A 279 3.68e-12 c.69.1.13 34713 1ispA 181 3.73e-12 c.69.1.18 76778 1cvl 319 5.44e-12 1llfA 534 7.30e-12 c.69.1.17 78094 2h7cA 542 1.15e-11 c.69.1.1 136207 1thgA 544 1.36e-11 c.69.1.17 34763 2qs9A 194 1.77e-11 3bixA 574 3.30e-11 1bu8A 452 3.43e-11 b.12.1.2,c.69.1.19 23647,34795 1thg 544 4.00e-11 1p0iA 529 4.82e-11 c.69.1.1 93867 1uxoA 192 5.33e-11 c.69.1.31 108121 1hplA 449 5.39e-11 b.12.1.2,c.69.1.19 23639,34787 1jmkC 230 9.00e-11 c.69.1.22 71747 2px6A 316 1.48e-10 2bceA 585 1.80e-10 c.69.1.1 34625 2bce 581 1.80e-10 2cb9A 244 5.02e-10 1thtA 305 1.39e-09 c.69.1.13 34711 1ivyA 452 3.03e-09 c.69.1.5 34654 2dsnA 387 2.74e-08 2z5gA 387 7.82e-06 1ac5A 483 8.59e-06 c.69.1.5 34653 1ku0A 388 1.82e-05 c.69.1.18 72994 1uwcA 261 0.000136 c.69.1.17 100101 1tib 269 0.000225 1whsA 255 0.000240 c.69.1.5 34649 1cex 214 0.000280 1g66A 207 0.000433 c.69.1.30 31329 1cexA 214 0.002988 c.69.1.30 31285 1tibA 269 0.003185 c.69.1.17 34738 2czqA 205 0.003568 3tglA 269 0.004512 c.69.1.17 34733 2d80A 318 0.007623 2oryA 346 0.01509 2d81A 318 0.09845 1whsB 153 1.305 1edgA 380 1.783 c.1.8.3 28807 2q7xA 326 4.583 1moq 368 4.698 1z45A 699 4.929 b.30.5.4,c.2.1.2 124427,124428 2pgnA 589 5.036 2e7zA 727 5.526 3b55A 451 6.187 1j1nA 492 6.244 c.94.1.1 83978 2bkaA 242 6.595 c.2.1.2 128666 2h1yA 321 7.437 2z8xA 617 8.402 2p91A 285 8.883 2gruA 368 9.220 1k0fA 277 9.612 c.92.2.2 71974 1pvdA 537 10.80 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1eu1A 780 11.59 b.52.2.2,c.81.1.1 26903,35311 1iirA 415 12.18 c.87.1.5 62453 1fjhA 257 12.66 c.2.1.2 29870 1ne7A 289 13.19 c.124.1.1 91833 2j3hA 345 13.37 2ppwA 216 13.75 1zc6A 305 14.58 c.55.1.5,c.55.1.5 124888,124889 1kqpA 271 14.87 c.26.2.1 72883 1xahA 354 14.93 3crrA 323 16.07 1o9gA 250 16.43 c.66.1.29 86692 2ffeA 311 16.89 c.143.1.1 133381 3c86A 328 16.93 1oxwA 373 17.17 c.19.1.3 87539 2deoA 230 17.24 1e8cA 498 17.30 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2jfkA 433 18.52 1f0kA 364 18.67 c.87.1.2 35465 2qtwB 546 18.77 2df8A 325 18.81 1y5iA 1246 19.81 b.52.2.2,c.81.1.1 122639,122640 1x6vA 630 20.12 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qorA 327 20.36 b.35.1.2,c.2.1.1 24766,29782 1x1tA 260 20.48 c.2.1.2 121597 1tt7A 330 21.84 b.35.1.2,c.2.1.1 112623,112624 1pixA 587 21.95 c.14.1.4,c.14.1.4 118578,118579 1ooeA 236 22.46 c.2.1.2 87196 4uagA 437 22.65 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2masA 314 23.21 c.70.1.1 34810 2f5xA 312 23.68 1tk9A 188 23.85 c.80.1.3 107082 1rrmA 386 24.71 e.22.1.2 105081 2nxwA 565 24.81 1e5mA 416 25.94 c.95.1.1,c.95.1.1 58973,58974 2g1iA 563 26.89 2q62A 247 27.47 2qgmA 445 27.53 2pocA 367 28.16 1i2cA 404 28.46 c.2.1.2 83666 1mjnA 179 28.58 c.62.1.1 79210 2p5yA 311 28.65 1ozhA 566 28.72 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2qt1A 207 29.52 2ze7A 253 30.13 2d4wA 504 31.47 2yvuA 186 32.28 2e4tA 519 32.48 2hzbA 333 32.56 c.143.1.1 136911 1vf8A 377 33.30 c.1.8.5,d.26.3.1 120029,120030 2c1xA 456 33.33 2ppvA 332 33.65 1bu6O 501 33.99 c.55.1.4,c.55.1.4 33499,33500 2gdzA 267 34.10 c.2.1.2 135043 1zbqA 327 34.12 c.2.1.2 124862 2ef0A 301 34.34 2e18A 257 34.58 1kewA 361 35.08 c.2.1.2 68544 1ct9A 553 35.58 c.26.2.1,d.153.1.1 31616,41834 2qmoA 220 39.88 2h7mA 269 40.95 c.2.1.2 136219 1qmgA 524 41.28 a.100.1.2,c.2.1.6 18785,30182 1wlyA 333 41.39 2c2nA 339 41.82 3b9gA 328 42.26 1l5oA 356 42.66 c.39.1.1 77711 2qo3A 915 43.36 1xgkA 352 43.81 c.2.1.2 115286 2yvaA 196 45.12 2p1zA 180 45.32 2o2zA 323 45.78 2jfgA 445 46.25 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2i2wA 212 47.58 1gu7A 364 47.66 b.35.1.2,c.2.1.1 83321,83322 1je0A 236 49.40 c.56.2.1 66581 2cuyA 305 49.88 1gl6A 436 49.96 c.37.1.11 70259 2ez9A 603 50.74 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1eziA 228 52.49 c.68.1.13 34512 2p8uA 478 53.31 2dkfA 431 53.83 1ml4A 308 54.04 c.78.1.1,c.78.1.1 79255,79256 1tedA 393 54.25 c.95.1.2 106807 2cb0A 333 54.43 2gt1A 326 54.90 1ir6A 424 55.92 c.107.1.2 71342 1t2aA 375 56.05 c.2.1.2 99078 1gteA 1025 56.30 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2qubA 615 56.56 1nffA 260 58.86 c.2.1.2 80457 3c3dA 311 59.14 1y8cA 246 59.76 c.66.1.43 116563 1gkpA 458 59.87 b.92.1.3,c.1.9.6 70231,70232 2vc7A 314 59.97 2pq6A 482 61.28 1a8rA 221 61.50 d.96.1.1 40587 1spxA 278 62.10 c.2.1.2 98958 1ja9A 274 62.55 c.2.1.2 62817 1n7hA 381 64.56 c.2.1.2 80250 1ox0A 430 65.20 c.95.1.1,c.95.1.1 87495,87496 2nm0A 253 65.73 2guyA 478 65.81 b.71.1.1,c.1.8.1 135754,135755 1wohA 305 66.90 c.42.1.1 109446 2djiA 590 67.64 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1nhpA 447 67.77 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1p3dA 475 68.08 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1jx6A 342 68.51 c.93.1.1 67406 1b3bA 415 69.65 c.2.1.7,c.58.1.1 30244,33892 2b8nA 429 69.67 c.118.1.1 128093 1kpgA 287 69.80 c.66.1.18 68735 1tcvA 287 70.80 1rlmA 271 72.07 c.108.1.10 111860 1on3A 523 73.43 c.14.1.4,c.14.1.4 87107,87108 2jc5A 259 73.51 2vbfA 570 74.49 1pswA 348 74.65 c.87.1.7 88287 1fs5A 266 74.87 c.124.1.1 65044 2hjsA 340 75.17 c.2.1.3,d.81.1.1 136547,136548 1uzmA 247 75.24 c.2.1.2 119811 1y56B 382 77.08 3c1oA 321 77.15 1kyzA 365 77.48 a.4.5.29,c.66.1.12 73312,73313 2iyfA 430 77.90 3c3pA 210 78.46 1q6zA 528 78.92 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2z1mA 345 79.13 1kmkA 406 79.57 c.67.1.3 68696 1h1dA 221 79.76 c.66.1.1 83452 1eq2A 310 80.29 c.2.1.2 29814 2r6r1 338 80.42 2yy7A 312 80.72 1o4sA 389 81.44 c.67.1.1 86620 1htwA 158 81.44 c.37.1.18 71083 3c3jA 384 82.67 2i7vA 459 82.85 1m4tA 392 85.57 c.95.1.1,c.95.1.1 78617,78618 1sb8A 352 85.74 c.2.1.2 105410 2f2sA 406 85.87 2e57A 637 87.38 2hxvA 360 88.59 c.71.1.2,c.97.1.2 136859,136860 1v4vA 376 88.72 c.87.1.3 100313 1z15A 344 89.41 1oroA 213 89.68 c.61.1.1 34093