# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.62e-24 c.69.1.25 77772 1vlqA 337 2.59e-23 c.69.1.25 108848 1u2eA 289 3.06e-22 2hdwA 367 3.13e-22 1lzlA 323 3.81e-22 c.69.1.2 78306 2z3zA 706 4.12e-22 1u4nA 310 4.30e-22 c.69.1.2 113021 1jkmA 358 5.35e-22 c.69.1.2 34633 2d5lA 706 6.96e-22 2jbwA 386 8.63e-22 2hu5A 582 9.39e-22 b.69.7.2,c.69.1.33 136763,136764 2og1A 286 9.83e-22 1jfrA 262 1.52e-21 c.69.1.16 34724 2pujA 286 1.58e-21 3b5eA 223 1.67e-21 1b6gA 310 2.02e-21 c.69.1.8 34661 2fx5A 258 2.26e-21 2puhA 286 3.13e-21 2rhwA 283 3.19e-21 1orvA 728 3.36e-21 b.70.3.1,c.69.1.24 87354,87355 1fj2A 232 3.47e-21 c.69.1.14 34720 2o7rA 338 3.50e-21 2uz0A 263 3.63e-21 1q0rA 298 4.32e-21 c.69.1.28 95508 1b6g 310 4.47e-21 1c4xA 285 4.71e-21 c.69.1.10 34684 1zd3A 555 4.79e-21 c.108.1.2,c.69.1.11 124930,124931 2b61A 377 4.83e-21 1hlgA 371 6.74e-21 c.69.1.6 34656 2r11A 306 6.98e-21 1bn7A 294 8.29e-21 c.69.1.8 34677 1zi8A 236 9.05e-21 1auoA 218 9.20e-21 c.69.1.14 34716 2o2gA 223 9.30e-21 1uk8A 282 9.62e-21 c.69.1.10 107907 2qm0A 275 9.98e-21 3bdiA 207 1.05e-20 1zoiA 276 1.19e-20 1h2wA 710 1.25e-20 b.69.7.1,c.69.1.4 76596,76597 1din 236 1.42e-20 1k8qA 377 1.64e-20 c.69.1.6 72177 1vkhA 273 1.68e-20 c.69.1.32 108662 2i3dA 249 1.76e-20 1jjiA 311 1.81e-20 c.69.1.2 66766 2pl5A 366 1.84e-20 1azwA 313 1.91e-20 c.69.1.7 34658 1wm1A 317 2.24e-20 c.69.1.7 109405 2e3jA 356 2.25e-20 2r8bA 251 2.26e-20 1jjfA 268 2.88e-20 c.69.1.2 66765 1j1iA 296 3.06e-20 c.69.1.10 83977 2hm7A 310 3.13e-20 1brt 277 3.17e-20 2fukA 220 3.50e-20 1womA 271 3.79e-20 3bxpA 277 3.81e-20 2bklA 695 4.17e-20 2ocgA 254 4.24e-20 2qmqA 286 4.42e-20 1mtzA 293 4.44e-20 c.69.1.7 79467 1wb4A 297 4.65e-20 c.69.1.2 120827 1ufoA 238 5.02e-20 c.69.1.27 99344 2cjpA 328 5.18e-20 2b20A 403 6.53e-20 b.1.18.20,c.69.1.2 127685,127686 1o6gA 710 6.87e-20 b.69.7.1,c.69.1.4 81087,81088 1xqwA 293 7.13e-20 2qruA 274 7.23e-20 1hkhA 279 8.75e-20 c.69.1.12 90628 1dqzA 280 8.84e-20 c.69.1.3 34638 3bf7A 255 9.14e-20 1va4A 279 1.06e-19 c.69.1.12 108458 1imjA 210 1.10e-19 c.69.1.23 71246 1pv1A 299 1.12e-19 c.69.1.34 111639 2veoA 441 1.15e-19 3c8dA 403 1.17e-19 1a8qA 274 1.20e-19 c.69.1.12 34702 1xklA 273 1.30e-19 c.69.1.20 115410 1mj5A 302 1.37e-19 c.69.1.8 91285 3c5vA 316 1.39e-19 1a8sA 273 1.69e-19 c.69.1.12 34710 1brtA 277 1.77e-19 c.69.1.12 34699 1lnsA 763 1.86e-19 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1y37A 304 2.05e-19 1qj4A 257 2.41e-19 c.69.1.20 34796 1r88A 280 2.58e-19 c.69.1.3 97219 1f0nA 285 2.61e-19 c.69.1.3 34636 1ehyA 294 2.64e-19 c.69.1.11 34693 1r1dA 247 3.25e-19 c.69.1.29 96813 2o2iA 300 3.42e-19 3bwxA 285 3.61e-19 1tqhA 247 3.88e-19 c.69.1.29 107225 1mpxA 615 4.80e-19 b.18.1.13,c.69.1.21 85041,85042 2qvbA 297 5.09e-19 1qo7A 394 8.83e-19 c.69.1.11 34697 2psdA 318 9.99e-19 2pblA 262 1.06e-18 1tcaA 317 1.11e-18 c.69.1.17 34726 2yysA 286 1.14e-18 1yr2A 741 1.39e-18 1m33A 258 1.85e-18 c.69.1.26 78514 2gzsA 278 2.00e-18 1ju3A 583 7.75e-18 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 8.70e-18 1cvlA 319 9.99e-18 c.69.1.18 34786 1pjaA 302 4.14e-17 c.69.1.13 94758 1ycdA 243 9.40e-17 1tca 317 1.39e-16 1qlwA 328 1.41e-16 c.69.1.15 34722 2ogtA 498 1.85e-16 2rauA 354 1.86e-16 1r3dA 264 2.74e-16 c.69.1.35 111680 1mnaA 298 4.72e-16 c.69.1.22 79322 2q0xA 335 4.75e-16 2qjwA 176 4.99e-16 3bdvA 191 7.33e-16 1qe3A 489 8.95e-16 c.69.1.1 34630 1ukcA 522 2.26e-15 c.69.1.17 107911 1ys1X 320 3.17e-15 1ispA 181 4.51e-15 c.69.1.18 76778 1ei9A 279 4.86e-15 c.69.1.13 34713 1ea5A 537 5.21e-15 c.69.1.1 34592 1llfA 534 6.15e-15 c.69.1.17 78094 1cvl 319 1.15e-14 1p0iA 529 1.68e-14 c.69.1.1 93867 2qs9A 194 3.49e-14 1thgA 544 4.65e-14 c.69.1.17 34763 1uxoA 192 1.11e-13 c.69.1.31 108121 1bu8A 452 1.15e-13 b.12.1.2,c.69.1.19 23647,34795 1thg 544 1.47e-13 1hplA 449 1.85e-13 b.12.1.2,c.69.1.19 23639,34787 2bceA 585 2.99e-13 c.69.1.1 34625 1jmkC 230 3.26e-13 c.69.1.22 71747 2px6A 316 4.47e-13 3bixA 574 5.56e-13 2h7cA 542 6.08e-13 c.69.1.1 136207 2bce 581 1.21e-12 2cb9A 244 2.36e-12 1thtA 305 2.08e-11 c.69.1.13 34711 1ivyA 452 3.82e-10 c.69.1.5 34654 2dsnA 387 9.25e-10 2z5gA 387 5.70e-07 1ac5A 483 7.65e-07 c.69.1.5 34653 1ku0A 388 2.56e-06 c.69.1.18 72994 1tib 269 3.64e-06 1uwcA 261 3.68e-06 c.69.1.17 100101 1cex 214 1.13e-05 1g66A 207 1.49e-05 c.69.1.30 31329 2d80A 318 3.07e-05 1tibA 269 9.63e-05 c.69.1.17 34738 1whsA 255 0.000141 c.69.1.5 34649 1cexA 214 0.000164 c.69.1.30 31285 3tglA 269 0.000232 c.69.1.17 34733 2czqA 205 0.000303 2d81A 318 0.000418 2oryA 346 0.001632 1edgA 380 0.1361 c.1.8.3 28807 1whsB 153 0.2332 1f0kA 364 2.626 c.87.1.2 35465 1iirA 415 3.062 c.87.1.5 62453 1o9gA 250 3.425 c.66.1.29 86692 2q7xA 326 3.468 1oxwA 373 4.081 c.19.1.3 87539 1fjhA 257 4.254 c.2.1.2 29870 1ooeA 236 5.151 c.2.1.2 87196 1moq 368 5.514 2p91A 285 5.636 1tk9A 188 5.957 c.80.1.3 107082 2df8A 325 6.130 2ze7A 253 6.775 1p3dA 475 7.547 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2c2nA 339 7.767 1x1tA 260 8.087 c.2.1.2 121597 2f5xA 312 8.144 2deoA 230 8.473 2e18A 257 8.691 2bkaA 242 9.117 c.2.1.2 128666 2yvuA 186 9.186 2gruA 368 10.53 3b55A 451 10.76 1xgkA 352 11.03 c.2.1.2 115286 2z1mA 345 11.83 2o2zA 323 12.04 2ppwA 216 12.78 1rrmA 386 13.53 e.22.1.2 105081 2yvaA 196 13.80 2cb0A 333 14.36 2qmoA 220 15.21 2gt1A 326 15.85 2i2wA 212 17.71 1ml4A 308 17.89 c.78.1.1,c.78.1.1 79255,79256 2qt1A 207 17.91 1zc6A 305 18.44 c.55.1.5,c.55.1.5 124888,124889 1mjnA 179 18.57 c.62.1.1 79210 1ja9A 274 19.03 c.2.1.2 62817 1kpgA 287 19.95 c.66.1.18 68735 1eziA 228 20.08 c.68.1.13 34512 2h1yA 321 20.28 2d4wA 504 21.22 1bf6A 291 21.28 c.1.9.3 29065 2i49A 429 21.32 1y8cA 246 21.50 c.66.1.43 116563 2dtxA 264 21.50 2dvzA 314 21.88 2z8xA 617 22.12 2ppvA 332 22.43 2vc7A 314 22.43 1eny 268 23.33 2jfkA 433 23.80 1tcvA 287 24.37 2ae2A 260 24.48 c.2.1.2 29945 1bu6O 501 25.10 c.55.1.4,c.55.1.4 33499,33500 2nm0A 253 25.20 4uagA 437 25.32 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1chd 203 25.88 1y56B 382 26.07 1xu9A 286 26.69 c.2.1.2 116052 3c86A 328 27.01 1hgxA 183 27.56 c.61.1.1 34027 2iyfA 430 27.65 3crrA 323 27.77 2h7mA 269 27.97 c.2.1.2 136219 2cuyA 305 28.25 1v4vA 376 28.70 c.87.1.3 100313 1hdcA 253 28.76 c.2.1.2 29862 1uluA 261 29.03 c.2.1.2 113292 3cjpA 272 29.11 2gasA 307 29.42 1htwA 158 29.62 c.37.1.18 71083 2qtwB 546 29.87 1x6vA 630 29.88 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qwjA 229 30.18 c.68.1.13 96478 1i2cA 404 30.62 c.2.1.2 83666 1bd0A 388 31.01 b.49.2.2,c.1.6.1 26480,28642 1vf8A 377 31.15 c.1.8.5,d.26.3.1 120029,120030 2f2sA 406 31.19 2ew8A 249 34.23 c.2.1.2 132447 2pk3A 321 34.24 1fmcA 255 35.41 c.2.1.2 29856 2pezA 179 35.44 2p5yA 311 35.94 2dknA 255 36.49 2amlA 373 36.54 1w6uA 302 37.13 c.2.1.2 114288 1kqpA 271 37.41 c.26.2.1 72883 1nffA 260 38.24 c.2.1.2 80457 2jfgA 445 38.96 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1geeA 261 40.79 c.2.1.2 90509 2jahA 247 41.10 2e5fA 325 42.13 1i24A 404 42.95 c.2.1.2 83663 1gegA 256 43.36 c.2.1.2 29888 1e6wA 260 43.36 c.2.1.2 59326 2j3hA 345 43.39 2p1zA 180 43.91 1zmoA 244 44.08 1zbqA 327 44.68 c.2.1.2 124862 1e5kA 201 45.53 c.68.1.8 34578 1ir6A 424 45.72 c.107.1.2 71342 1i52A 236 45.73 c.68.1.13 61767 5nul 138 45.80 1s3iA 310 45.84 b.46.1.1,c.65.1.1 98435,98436 2gouA 365 47.05 1nhsA 447 47.08 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ijbA 202 47.11 c.62.1.1 71229 1f3lA 321 47.46 c.66.1.6 59630 1wvgA 359 47.72 c.2.1.2 121339 1wxiA 275 47.74 c.26.2.1 121400 1mla 309 47.88 1yxmA 303 48.00 c.2.1.2 124192 2q62A 247 48.13 1nhpA 447 48.66 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1spxA 278 50.69 c.2.1.2 98958 1h72C 296 51.07 d.14.1.5,d.58.26.1 60712,60713 2a5lA 200 51.48 c.23.5.8 126176 2e7zA 727 51.50 2dplA 308 52.26 1mlaA 309 52.68 c.19.1.1,d.58.23.1 31031,39383 1k2wA 256 52.77 c.2.1.2 90927 1je0A 236 52.85 c.56.2.1 66581 2dvtA 327 53.29 c.1.9.15 131793 1e6uA 321 53.37 c.2.1.2 29805 2qpqA 301 53.52 1q6zA 528 53.77 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1uzmA 247 54.24 c.2.1.2 119811 2pd6A 264 54.28 1y5mA 276 54.59 c.2.1.2 122645 2g29A 417 54.69 1xg5A 279 55.69 c.2.1.2 115277 1bdbA 277 55.89 c.2.1.2 29874 3c1oA 321 56.66 1e8cA 498 57.22 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2masA 314 57.57 c.70.1.1 34810 2uytA 489 57.66 2yzkA 178 57.96 2dm6A 333 58.36 b.35.1.2,c.2.1.1 131567,131568 1udcA 338 59.30 c.2.1.2 29785 1ne7A 289 59.39 c.124.1.1 91833 2zf5O 497 59.64 2egxA 269 59.67 1v98A 140 60.01 1g0oA 283 60.25 c.2.1.2 60181 2fr1A 486 60.54 c.2.1.2,c.2.1.2 133961,133962 2o23A 265 61.02 c.2.1.2 138884 1yoeA 322 61.22 1xzwA 426 61.45 b.1.12.1,d.159.1.1 116270,116271 2ax4A 198 61.57 1wmaA 276 61.77 c.2.1.2 121042 2ac7A 235 61.93 c.56.2.1 126543 1xm7A 195 62.16 d.159.1.8 115473 2o6lA 170 62.46 2dkfA 431 62.74 1gl6A 436 62.79 c.37.1.11 70259 2odtX 328 63.40 2p8uA 478 63.86 2v74B 346 63.95 1x7gA 261 64.47 c.2.1.2 114929 1uayA 242 64.58 c.2.1.2 88390 2d1yA 256 64.87 c.2.1.2 131151 2c1xA 456 65.16 1vkrA 125 65.83 c.44.2.1 108689 2cmd 312 66.03 1ri5A 298 66.73 c.66.1.34 97502 2qm1A 326 66.99 2pocA 367 67.15 8abp 306 67.27 2qiwA 255 67.76 2p3rA 510 68.23 c.55.1.4,c.55.1.4 139471,139472 2gs8A 317 68.24 2hq1A 247 68.31 1j1nA 492 68.88 c.94.1.1 83978 3bhnA 236 69.27 1qsgA 265 69.31 c.2.1.2 29935 1v7zA 260 69.38 c.125.1.1 100488 1hdoA 206 69.96 c.2.1.2 60965 1w3iA 293 70.53 c.1.10.1 109152 1rttA 193 70.60 c.23.5.4 105098 1zemA 262 70.72 c.2.1.2 124984 1mf7A 194 70.95 c.62.1.1 84937 1xahA 354 71.32 1eceA 358 72.21 c.1.8.3 28813 1vl8A 267 72.39 c.2.1.2 108733 1k0fA 277 72.41 c.92.2.2 71974 5nulA 138 72.52 c.23.5.1 31191 2qsiA 137 72.66 1or8A 340 73.20 c.66.1.6 93451 1hxhA 253 74.08 c.2.1.2 76725 2yvdA 431 74.31 1yb0A 159 74.88 d.118.1.1 122865 1pswA 348 75.10 c.87.1.7 88287 1jx6A 342 75.76 c.93.1.1 67406 3c3pA 210 76.65 1tt7A 330 77.30 b.35.1.2,c.2.1.1 112623,112624 1i60A 278 77.93 c.1.15.4 71118 1bdb 277 78.66 2a3nA 355 78.78 1a8rA 221 78.97 d.96.1.1 40587 1oroA 213 80.35 c.61.1.1 34093 1rxyA 253 80.54 c.56.2.1 98065 1shuX 182 80.60 c.62.1.1 98882 3cs3A 277 80.84 2bsxA 253 81.18 c.56.2.1 129128 1tqyA 424 81.41 c.95.1.1,c.95.1.1 107245,107246 3cdxA 354 81.54 2v6gA 364 82.91 1e0cA 271 83.07 c.46.1.2,c.46.1.2 32717,32718 2qgmA 445 83.32 1odkA 235 83.58 c.56.2.1 86863 2pr7A 137 84.17 2ihtA 573 85.56 1j7jA 178 87.27 c.61.1.1 84131 8abpA 306 87.31 c.93.1.1 35647 1xttA 216 87.41 c.61.1.1 122300 2iyaA 424 87.65 2ffeA 311 87.70 c.143.1.1 133381 2ioyA 283 88.30 1ydeA 270 89.22 c.2.1.2 122980 2bcoA 350 89.50 c.56.5.7 128302 2j6pA 152 89.95