# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 9.54e-27 c.69.1.25 77772 1vlqA 337 1.39e-25 c.69.1.25 108848 1lzlA 323 6.93e-25 c.69.1.2 78306 2z3zA 706 1.06e-24 1jkmA 358 1.10e-24 c.69.1.2 34633 2hu5A 582 1.82e-24 b.69.7.2,c.69.1.33 136763,136764 1u4nA 310 2.51e-24 c.69.1.2 113021 1u2eA 289 4.12e-24 2jbwA 386 4.37e-24 2hdwA 367 4.88e-24 2d5lA 706 5.69e-24 1jfrA 262 6.57e-24 c.69.1.16 34724 1orvA 728 8.57e-24 b.70.3.1,c.69.1.24 87354,87355 1b6gA 310 1.11e-23 c.69.1.8 34661 2og1A 286 1.14e-23 2o7rA 338 1.84e-23 3b5eA 223 1.86e-23 2fx5A 258 1.88e-23 1b6g 310 2.45e-23 1zd3A 555 2.86e-23 c.108.1.2,c.69.1.11 124930,124931 2b61A 377 2.88e-23 2qm0A 275 2.88e-23 2uz0A 263 3.56e-23 1jjiA 311 4.68e-23 c.69.1.2 66766 1vkhA 273 5.53e-23 c.69.1.32 108662 1bn7A 294 5.57e-23 c.69.1.8 34677 1c4xA 285 5.91e-23 c.69.1.10 34684 2pujA 286 6.09e-23 1auoA 218 6.80e-23 c.69.1.14 34716 2rhwA 283 7.01e-23 2r11A 306 7.11e-23 2o2gA 223 7.22e-23 2puhA 286 8.30e-23 1q0rA 298 8.85e-23 c.69.1.28 95508 1fj2A 232 9.93e-23 c.69.1.14 34720 1zi8A 236 1.16e-22 1h2wA 710 1.18e-22 b.69.7.1,c.69.1.4 76596,76597 2hm7A 310 1.24e-22 1wm1A 317 1.60e-22 c.69.1.7 109405 1k8qA 377 1.61e-22 c.69.1.6 72177 1hlgA 371 1.61e-22 c.69.1.6 34656 1jjfA 268 1.71e-22 c.69.1.2 66765 2pl5A 366 1.93e-22 1din 236 1.94e-22 1uk8A 282 2.47e-22 c.69.1.10 107907 2qmqA 286 2.54e-22 3bdiA 207 2.74e-22 2r8bA 251 2.87e-22 1dqzA 280 2.96e-22 c.69.1.3 34638 2bklA 695 3.13e-22 2b20A 403 3.29e-22 b.1.18.20,c.69.1.2 127685,127686 1womA 271 3.64e-22 1wb4A 297 3.66e-22 c.69.1.2 120827 1ufoA 238 4.00e-22 c.69.1.27 99344 1azwA 313 4.09e-22 c.69.1.7 34658 2veoA 441 4.12e-22 3bxpA 277 4.18e-22 2i3dA 249 4.46e-22 1lnsA 763 4.50e-22 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3c8dA 403 5.01e-22 2fukA 220 5.42e-22 1o6gA 710 6.71e-22 b.69.7.1,c.69.1.4 81087,81088 1f0nA 285 7.06e-22 c.69.1.3 34636 1j1iA 296 7.87e-22 c.69.1.10 83977 1xqwA 293 8.00e-22 1mtzA 293 8.30e-22 c.69.1.7 79467 1pv1A 299 9.21e-22 c.69.1.34 111639 2ocgA 254 9.71e-22 1imjA 210 9.91e-22 c.69.1.23 71246 2qruA 274 1.06e-21 2e3jA 356 1.08e-21 1brt 277 1.20e-21 1zoiA 276 1.21e-21 1mj5A 302 1.37e-21 c.69.1.8 91285 3bf7A 255 2.18e-21 1xklA 273 2.64e-21 c.69.1.20 115410 2cjpA 328 3.03e-21 1mpxA 615 3.85e-21 b.18.1.13,c.69.1.21 85041,85042 1y37A 304 4.86e-21 2pblA 262 5.69e-21 1r88A 280 5.84e-21 c.69.1.3 97219 1hkhA 279 6.92e-21 c.69.1.12 90628 1brtA 277 7.39e-21 c.69.1.12 34699 1qj4A 257 7.91e-21 c.69.1.20 34796 2o2iA 300 7.94e-21 1va4A 279 1.03e-20 c.69.1.12 108458 1ehyA 294 1.04e-20 c.69.1.11 34693 2qvbA 297 1.09e-20 1a8sA 273 1.13e-20 c.69.1.12 34710 1a8qA 274 1.15e-20 c.69.1.12 34702 2psdA 318 1.46e-20 1yr2A 741 1.63e-20 2yysA 286 1.75e-20 1tcaA 317 1.93e-20 c.69.1.17 34726 1qo7A 394 1.98e-20 c.69.1.11 34697 1r1dA 247 2.59e-20 c.69.1.29 96813 3bwxA 285 2.59e-20 3c5vA 316 2.80e-20 2gzsA 278 2.97e-20 1tqhA 247 6.41e-20 c.69.1.29 107225 1ju3A 583 1.22e-19 b.18.1.13,c.69.1.21 67300,67301 1m33A 258 1.76e-19 c.69.1.26 78514 1cvlA 319 5.19e-19 c.69.1.18 34786 2hfkA 319 6.42e-19 1qlwA 328 1.75e-18 c.69.1.15 34722 1pjaA 302 2.65e-18 c.69.1.13 94758 1tca 317 2.88e-18 1ycdA 243 4.29e-18 2ogtA 498 6.10e-18 2q0xA 335 1.14e-17 1qe3A 489 1.32e-17 c.69.1.1 34630 3bdvA 191 1.44e-17 2rauA 354 1.69e-17 1r3dA 264 2.52e-17 c.69.1.35 111680 2qjwA 176 3.35e-17 1mnaA 298 3.91e-17 c.69.1.22 79322 1ukcA 522 5.33e-17 c.69.1.17 107911 1llfA 534 1.01e-16 c.69.1.17 78094 1ei9A 279 1.86e-16 c.69.1.13 34713 1ys1X 320 2.06e-16 1ea5A 537 4.13e-16 c.69.1.1 34592 1ispA 181 9.49e-16 c.69.1.18 76778 1p0iA 529 1.12e-15 c.69.1.1 93867 1thgA 544 1.14e-15 c.69.1.17 34763 2qs9A 194 1.23e-15 1cvl 319 1.29e-15 1thg 544 2.77e-15 1jmkC 230 1.49e-14 c.69.1.22 71747 1bu8A 452 1.53e-14 b.12.1.2,c.69.1.19 23647,34795 1hplA 449 1.66e-14 b.12.1.2,c.69.1.19 23639,34787 2bceA 585 2.31e-14 c.69.1.1 34625 1uxoA 192 2.79e-14 c.69.1.31 108121 2h7cA 542 3.25e-14 c.69.1.1 136207 3bixA 574 3.70e-14 2px6A 316 5.86e-14 2cb9A 244 1.16e-13 2bce 581 1.29e-13 1thtA 305 3.63e-12 c.69.1.13 34711 1ivyA 452 2.08e-11 c.69.1.5 34654 2dsnA 387 2.28e-10 1ac5A 483 5.51e-08 c.69.1.5 34653 1uwcA 261 6.58e-07 c.69.1.17 100101 1ku0A 388 6.86e-07 c.69.1.18 72994 2z5gA 387 9.99e-07 1tib 269 1.33e-06 1cex 214 8.34e-06 2d80A 318 1.03e-05 1g66A 207 2.00e-05 c.69.1.30 31329 1tibA 269 2.87e-05 c.69.1.17 34738 3tglA 269 3.56e-05 c.69.1.17 34733 1whsA 255 4.06e-05 c.69.1.5 34649 2oryA 346 0.000214 1cexA 214 0.000238 c.69.1.30 31285 2d81A 318 0.000264 2czqA 205 0.000432 1edgA 380 0.05957 c.1.8.3 28807 1whsB 153 0.1451 2q7xA 326 1.267 1moq 368 3.519 1o9gA 250 4.961 c.66.1.29 86692 2f5xA 312 5.404 2o2zA 323 6.889 2c2nA 339 7.482 1tk9A 188 7.598 c.80.1.3 107082 1oxwA 373 8.013 c.19.1.3 87539 2i49A 429 8.506 2ze7A 253 9.085 3bhnA 236 9.376 2j3hA 345 10.11 2df8A 325 10.37 2bkaA 242 10.61 c.2.1.2 128666 2deoA 230 10.97 2vc7A 314 11.49 1ooeA 236 11.53 c.2.1.2 87196 2gruA 368 11.61 1e8cA 498 11.69 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1gu7A 364 12.25 b.35.1.2,c.2.1.1 83321,83322 2yvuA 186 12.54 3cjpA 272 13.40 2p91A 285 13.52 2z1mA 345 14.10 1zc6A 305 15.42 c.55.1.5,c.55.1.5 124888,124889 1xgkA 352 15.56 c.2.1.2 115286 1x1tA 260 15.89 c.2.1.2 121597 2ppvA 332 15.93 2gs8A 317 16.06 2pk3A 321 16.84 3b55A 451 16.88 1iirA 415 17.01 c.87.1.5 62453 2jepA 395 17.17 1rrmA 386 17.21 e.22.1.2 105081 2ppwA 216 17.62 1j1nA 492 18.64 c.94.1.1 83978 2gasA 307 18.90 1v4vA 376 18.95 c.87.1.3 100313 1p3dA 475 20.05 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2dm6A 333 20.41 b.35.1.2,c.2.1.1 131567,131568 1h72C 296 21.73 d.14.1.5,d.58.26.1 60712,60713 1eceA 358 21.91 c.1.8.3 28813 2qmoA 220 22.90 1f0kA 364 23.00 c.87.1.2 35465 2qt1A 207 23.06 2qtwB 546 23.38 1wlyA 333 23.78 2ihtA 573 24.50 2e18A 257 24.83 2p5yA 311 24.86 1mjnA 179 25.01 c.62.1.1 79210 1kpgA 287 25.23 c.66.1.18 68735 1eziA 228 26.03 c.68.1.13 34512 2q62A 247 26.28 2z8xA 617 26.35 1htwA 158 27.63 c.37.1.18 71083 1o89A 345 28.09 b.35.1.2,c.2.1.1 92644,92645 2aotA 292 28.36 c.66.1.19 127098 1qorA 327 28.36 b.35.1.2,c.2.1.1 24766,29782 2hlsA 243 28.62 1ijbA 202 28.95 c.62.1.1 71229 1tcvA 287 29.69 1eny 268 30.15 1e6uA 321 31.12 c.2.1.2 29805 2bllA 345 31.26 c.2.1.2 128733 2f2sA 406 31.27 1w3iA 293 31.85 c.1.10.1 109152 2e7zA 727 31.95 1nhpA 447 32.15 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1vf8A 377 32.48 c.1.8.5,d.26.3.1 120029,120030 2cuyA 305 32.52 1tt7A 330 32.80 b.35.1.2,c.2.1.1 112623,112624 1ja9A 274 33.54 c.2.1.2 62817 1mlaA 309 34.25 c.19.1.1,d.58.23.1 31031,39383 2pocA 367 34.27 1i2cA 404 34.55 c.2.1.2 83666 3c3jA 384 34.99 2cb0A 333 35.09 2cdqA 510 35.54 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2eihA 343 35.54 2dvzA 314 35.74 2jfkA 433 35.79 2dkfA 431 35.83 2h7mA 269 36.11 c.2.1.2 136219 1k0fA 277 36.31 c.92.2.2 71974 2i2wA 212 36.34 2gt1A 326 36.67 1x6vA 630 37.16 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1ml4A 308 37.46 c.78.1.1,c.78.1.1 79255,79256 1s3iA 310 37.79 b.46.1.1,c.65.1.1 98435,98436 3c4vA 426 37.96 2fqxA 318 38.20 2q7dA 346 38.57 2a3nA 355 39.25 2h1yA 321 39.56 3crrA 323 40.30 1bf6A 291 40.92 c.1.9.3 29065 1mla 309 40.98 2yvaA 196 41.58 1bu6O 501 42.10 c.55.1.4,c.55.1.4 33499,33500 1i52A 236 42.36 c.68.1.13 61767 1gvfA 286 42.70 c.1.10.2 70599 1v98A 140 43.16 1ve1A 304 43.79 c.79.1.1 120007 1zmoA 244 46.01 2bsxA 253 46.55 c.56.2.1 129128 1q6zA 528 46.58 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1o58A 303 47.18 c.79.1.1 92491 2i87A 364 47.38 1je0A 236 47.56 c.56.2.1 66581 1byi 224 47.71 1v7zA 260 48.15 c.125.1.1 100488 1iz0A 302 48.41 b.35.1.2,c.2.1.1 83821,83822 1fjhA 257 49.62 c.2.1.2 29870 2dplA 308 49.77 2ae2A 260 50.14 c.2.1.2 29945 3c86A 328 51.33 1y5mA 276 51.42 c.2.1.2 122645 1i24A 404 51.45 c.2.1.2 83663 1i9gA 280 51.63 c.66.1.13 62090 1e0cA 271 53.01 c.46.1.2,c.46.1.2 32717,32718 1t2aA 375 53.01 c.2.1.2 99078 2oi2A 292 53.54 2j6pA 152 53.82 1gl6A 436 54.47 c.37.1.11 70259 1kqpA 271 54.58 c.26.2.1 72883 2g29A 417 54.79 1fmcA 255 55.65 c.2.1.2 29856 1qwjA 229 55.92 c.68.1.13 96478 2d4wA 504 56.54 3c1oA 321 56.81 4uagA 437 57.03 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1dtxA 59 58.33 g.8.1.1 44551 1qmgA 524 58.43 a.100.1.2,c.2.1.6 18785,30182 1edtA 271 59.17 c.1.8.5 28993 1xu9A 286 59.89 c.2.1.2 116052 1qgoA 264 60.96 c.92.1.2 35596 1mf7A 194 62.66 c.62.1.1 84937 1zbqA 327 63.15 c.2.1.2 124862 2ffeA 311 64.07 c.143.1.1 133381 1kngA 156 64.45 c.47.1.10 72777 1jx6A 342 64.90 c.93.1.1 67406 2nm0A 253 65.82 1zsyA 357 66.23 2q5cA 196 66.28 2hfsA 332 66.35 1h1dA 221 66.40 c.66.1.1 83452 2p8uA 478 67.51 2hzbA 333 68.40 c.143.1.1 136911 1f2dA 341 68.95 c.79.1.1 35298 2masA 314 69.21 c.70.1.1 34810 2gouA 365 69.31 1y8cA 246 69.34 c.66.1.43 116563 1yb5A 351 69.60 b.35.1.2,c.2.1.1 116601,116602 1usgA 346 70.11 c.93.1.1 99864 2odtX 328 70.15 1toaA 313 72.21 c.92.2.2 35598 2r7aA 256 72.71 1zr0B 63 72.92 1bd0A 388 73.66 b.49.2.2,c.1.6.1 26480,28642 1m4tA 392 73.92 c.95.1.1,c.95.1.1 78617,78618 1w6uA 302 74.33 c.2.1.2 114288 1vhwA 253 75.05 c.56.2.1 100706 1gkpA 458 75.29 b.92.1.3,c.1.9.6 70231,70232 2v6gA 364 76.30 2p8jA 209 76.43 1nhsA 447 76.57 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2f46A 156 77.40 2uz1A 563 77.47 1e5kA 201 78.41 c.68.1.8 34578 1wxiA 275 78.52 c.26.2.1 121400 1f3lA 321 78.82 c.66.1.6 59630 2nuwA 288 78.83 1hdcA 253 78.86 c.2.1.2 29862 2pptA 155 79.02 1jakA 512 79.08 c.1.8.6,d.92.2.1 66472,66473 1moqA 368 79.89 c.80.1.1 35302 2ac7A 235 80.17 c.56.2.1 126543 1rxyA 253 80.89 c.56.2.1 98065 1udcA 338 81.23 c.2.1.2 29785 2b9wA 424 84.34 2amlA 373 84.85 1jflA 228 84.92 c.78.2.1,c.78.2.1 71656,71657 1xg5A 279 85.10 c.2.1.2 115277 2eg4A 230 85.27 2b1kA 168 86.01 1zmtA 254 86.66 c.2.1.2 125363 1l3iA 192 87.22 c.66.1.22 77676 1g0oA 283 87.98 c.2.1.2 60181 1yqdA 366 88.74 1wvgA 359 89.04 c.2.1.2 121339 1rzuA 485 89.63 c.87.1.8 105140