# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.79e-26 c.69.1.25 77772 1vlqA 337 2.03e-25 c.69.1.25 108848 1lzlA 323 1.06e-24 c.69.1.2 78306 2z3zA 706 1.76e-24 1jkmA 358 2.23e-24 c.69.1.2 34633 1u4nA 310 2.42e-24 c.69.1.2 113021 2hu5A 582 3.35e-24 b.69.7.2,c.69.1.33 136763,136764 2hdwA 367 3.98e-24 2jbwA 386 5.81e-24 2d5lA 706 6.10e-24 1u2eA 289 7.41e-24 1orvA 728 1.03e-23 b.70.3.1,c.69.1.24 87354,87355 2og1A 286 1.12e-23 1jfrA 262 1.37e-23 c.69.1.16 34724 1b6gA 310 1.72e-23 c.69.1.8 34661 2o7rA 338 2.49e-23 3b5eA 223 2.58e-23 2uz0A 263 3.20e-23 2fx5A 258 3.81e-23 1b6g 310 4.00e-23 1zd3A 555 4.68e-23 c.108.1.2,c.69.1.11 124930,124931 2pujA 286 5.29e-23 1c4xA 285 5.43e-23 c.69.1.10 34684 2qm0A 275 5.58e-23 2rhwA 283 5.98e-23 2puhA 286 6.25e-23 1fj2A 232 7.20e-23 c.69.1.14 34720 1jjiA 311 7.57e-23 c.69.1.2 66766 2r11A 306 7.91e-23 1bn7A 294 9.99e-23 c.69.1.8 34677 2b61A 377 1.20e-22 2hm7A 310 1.22e-22 1q0rA 298 1.29e-22 c.69.1.28 95508 1auoA 218 1.57e-22 c.69.1.14 34716 1vkhA 273 1.60e-22 c.69.1.32 108662 1uk8A 282 1.69e-22 c.69.1.10 107907 2o2gA 223 1.72e-22 1zi8A 236 1.94e-22 1hlgA 371 2.23e-22 c.69.1.6 34656 1h2wA 710 2.31e-22 b.69.7.1,c.69.1.4 76596,76597 1din 236 2.33e-22 1jjfA 268 2.63e-22 c.69.1.2 66765 3bdiA 207 2.69e-22 1wm1A 317 3.08e-22 c.69.1.7 109405 1womA 271 3.31e-22 2bklA 695 3.54e-22 1k8qA 377 3.64e-22 c.69.1.6 72177 2r8bA 251 3.68e-22 2fukA 220 4.18e-22 1wb4A 297 4.28e-22 c.69.1.2 120827 2pl5A 366 4.69e-22 2qmqA 286 4.92e-22 2i3dA 249 4.99e-22 1dqzA 280 5.48e-22 c.69.1.3 34638 2b20A 403 5.60e-22 b.1.18.20,c.69.1.2 127685,127686 1azwA 313 5.84e-22 c.69.1.7 34658 1zoiA 276 5.87e-22 3c8dA 403 7.51e-22 2e3jA 356 7.85e-22 1xqwA 293 8.53e-22 1mtzA 293 8.62e-22 c.69.1.7 79467 1ufoA 238 8.89e-22 c.69.1.27 99344 2veoA 441 9.88e-22 1j1iA 296 1.07e-21 c.69.1.10 83977 2ocgA 254 1.24e-21 1o6gA 710 1.30e-21 b.69.7.1,c.69.1.4 81087,81088 1brt 277 1.31e-21 1lnsA 763 1.39e-21 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1imjA 210 1.48e-21 c.69.1.23 71246 2qruA 274 1.72e-21 1mj5A 302 1.76e-21 c.69.1.8 91285 1xklA 273 1.82e-21 c.69.1.20 115410 3bxpA 277 1.96e-21 3bf7A 255 2.05e-21 1pv1A 299 2.06e-21 c.69.1.34 111639 1f0nA 285 2.26e-21 c.69.1.3 34636 2cjpA 328 2.97e-21 1y37A 304 5.32e-21 1r88A 280 5.56e-21 c.69.1.3 97219 1hkhA 279 6.55e-21 c.69.1.12 90628 1a8sA 273 7.05e-21 c.69.1.12 34710 1brtA 277 7.60e-21 c.69.1.12 34699 2o2iA 300 8.00e-21 1qj4A 257 8.01e-21 c.69.1.20 34796 1va4A 279 8.08e-21 c.69.1.12 108458 1mpxA 615 8.28e-21 b.18.1.13,c.69.1.21 85041,85042 1a8qA 274 8.30e-21 c.69.1.12 34702 3bwxA 285 9.06e-21 2psdA 318 9.15e-21 2qvbA 297 1.08e-20 1ehyA 294 1.25e-20 c.69.1.11 34693 2pblA 262 1.38e-20 1r1dA 247 1.40e-20 c.69.1.29 96813 3c5vA 316 2.16e-20 1qo7A 394 2.19e-20 c.69.1.11 34697 2yysA 286 2.71e-20 1tqhA 247 3.01e-20 c.69.1.29 107225 1yr2A 741 4.41e-20 1tcaA 317 5.56e-20 c.69.1.17 34726 2gzsA 278 6.68e-20 1m33A 258 1.38e-19 c.69.1.26 78514 1ju3A 583 2.18e-19 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 3.42e-19 1cvlA 319 7.19e-19 c.69.1.18 34786 1pjaA 302 2.48e-18 c.69.1.13 94758 1qlwA 328 3.70e-18 c.69.1.15 34722 1tca 317 4.12e-18 1ycdA 243 5.91e-18 2ogtA 498 8.73e-18 2rauA 354 1.56e-17 1r3dA 264 1.91e-17 c.69.1.35 111680 1qe3A 489 2.16e-17 c.69.1.1 34630 3bdvA 191 2.26e-17 1mnaA 298 2.48e-17 c.69.1.22 79322 2qjwA 176 2.51e-17 2q0xA 335 4.61e-17 1ukcA 522 8.74e-17 c.69.1.17 107911 1ei9A 279 1.89e-16 c.69.1.13 34713 1llfA 534 2.19e-16 c.69.1.17 78094 1ys1X 320 2.83e-16 1ea5A 537 4.61e-16 c.69.1.1 34592 1ispA 181 8.36e-16 c.69.1.18 76778 1p0iA 529 1.16e-15 c.69.1.1 93867 1thgA 544 1.29e-15 c.69.1.17 34763 2qs9A 194 1.43e-15 1cvl 319 1.76e-15 1thg 544 7.33e-15 1uxoA 192 1.03e-14 c.69.1.31 108121 1bu8A 452 1.50e-14 b.12.1.2,c.69.1.19 23647,34795 1hplA 449 2.17e-14 b.12.1.2,c.69.1.19 23639,34787 1jmkC 230 3.27e-14 c.69.1.22 71747 2bceA 585 3.64e-14 c.69.1.1 34625 3bixA 574 4.27e-14 2h7cA 542 5.36e-14 c.69.1.1 136207 2px6A 316 7.13e-14 2bce 581 1.51e-13 2cb9A 244 1.68e-13 1thtA 305 2.40e-12 c.69.1.13 34711 1ivyA 452 1.29e-11 c.69.1.5 34654 2dsnA 387 1.14e-10 1ac5A 483 1.11e-07 c.69.1.5 34653 2z5gA 387 4.75e-07 1ku0A 388 6.52e-07 c.69.1.18 72994 1uwcA 261 1.16e-06 c.69.1.17 100101 1tib 269 2.30e-06 2d80A 318 1.10e-05 1cex 214 1.16e-05 1g66A 207 2.05e-05 c.69.1.30 31329 1whsA 255 3.68e-05 c.69.1.5 34649 1tibA 269 4.10e-05 c.69.1.17 34738 3tglA 269 9.74e-05 c.69.1.17 34733 2d81A 318 0.000158 1cexA 214 0.000169 c.69.1.30 31285 2oryA 346 0.000310 2czqA 205 0.000537 1whsB 153 0.02955 1edgA 380 0.04840 c.1.8.3 28807 2q7xA 326 1.517 1iirA 415 1.893 c.87.1.5 62453 2c2nA 339 2.117 1moq 368 3.559 3cjpA 272 3.644 1o9gA 250 3.786 c.66.1.29 86692 2f5xA 312 4.915 2bkaA 242 5.131 c.2.1.2 128666 1tk9A 188 5.246 c.80.1.3 107082 3bhnA 236 6.294 2ze7A 253 6.455 2df8A 325 6.811 1p3dA 475 6.818 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1oxwA 373 6.969 c.19.1.3 87539 1f0kA 364 8.302 c.87.1.2 35465 2o2zA 323 8.719 2gs8A 317 9.450 2qmoA 220 9.462 1ooeA 236 9.824 c.2.1.2 87196 1eziA 228 10.71 c.68.1.13 34512 2deoA 230 10.74 1zc6A 305 10.88 c.55.1.5,c.55.1.5 124888,124889 2p91A 285 11.07 2f2sA 406 12.00 1v4vA 376 12.12 c.87.1.3 100313 2fqxA 318 12.40 2pk3A 321 13.83 2yvuA 186 14.03 2i49A 429 14.37 1htwA 158 14.53 c.37.1.18 71083 2j3hA 345 15.29 2z1mA 345 15.61 1rrmA 386 15.95 e.22.1.2 105081 1gu7A 364 15.95 b.35.1.2,c.2.1.1 83321,83322 1x1tA 260 15.96 c.2.1.2 121597 2e18A 257 16.44 1fjhA 257 16.49 c.2.1.2 29870 2gruA 368 16.57 2ppvA 332 16.57 2z8xA 617 16.82 1w3iA 293 16.89 c.1.10.1 109152 3b55A 451 17.59 2ppwA 216 18.15 1qwjA 229 18.64 c.68.1.13 96478 4uagA 437 20.14 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2cuyA 305 20.21 2d4wA 504 20.43 2p5yA 311 20.80 2dvzA 314 20.99 2gasA 307 21.57 2yvaA 196 21.88 3c4vA 426 22.61 2qt1A 207 22.79 1ja9A 274 23.29 c.2.1.2 62817 1tcvA 287 23.52 1v7zA 260 23.71 c.125.1.1 100488 1ml4A 308 23.75 c.78.1.1,c.78.1.1 79255,79256 2cb0A 333 23.76 1mlaA 309 24.01 c.19.1.1,d.58.23.1 31031,39383 1mla 309 24.79 1kpgA 287 25.53 c.66.1.18 68735 1e8cA 498 25.59 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2q7dA 346 25.62 1mjnA 179 25.96 c.62.1.1 79210 2j6pA 152 26.56 1h72C 296 26.56 d.14.1.5,d.58.26.1 60712,60713 1bu6O 501 26.69 c.55.1.4,c.55.1.4 33499,33500 2gt1A 326 27.28 2i2wA 212 27.30 1xgkA 352 27.70 c.2.1.2 115286 1vf8A 377 28.02 c.1.8.5,d.26.3.1 120029,120030 1wlyA 333 28.30 1bf6A 291 28.58 c.1.9.3 29065 2h1yA 321 28.58 2jepA 395 28.98 2vc7A 314 29.43 1e6uA 321 30.49 c.2.1.2 29805 2dplA 308 31.06 2ae2A 260 31.39 c.2.1.2 29945 1l3iA 192 32.35 c.66.1.22 77676 1i2cA 404 32.42 c.2.1.2 83666 2cmd 312 33.48 2gouA 365 33.66 1i52A 236 33.81 c.68.1.13 61767 2q5cA 196 34.13 2jfgA 445 35.16 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1h1dA 221 35.33 c.66.1.1 83452 1x6vA 630 35.90 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1y5mA 276 36.31 c.2.1.2 122645 2f46A 156 36.90 2dkfA 431 37.42 1gvfA 286 37.59 c.1.10.2 70599 2qtwB 546 37.93 2a3nA 355 38.94 3c86A 328 39.30 1hgxA 183 39.75 c.61.1.1 34027 2pocA 367 40.30 2bsxA 253 40.41 c.56.2.1 129128 1fmcA 255 41.11 c.2.1.2 29856 1je0A 236 41.38 c.56.2.1 66581 1xu9A 286 41.41 c.2.1.2 116052 2b1kA 168 41.62 2r7aA 256 42.87 2q62A 247 42.87 2dm6A 333 42.98 b.35.1.2,c.2.1.1 131567,131568 1y56B 382 43.33 3c1oA 321 43.54 1tvnA 293 44.25 c.1.8.3 119360 3c3jA 384 44.69 2odtX 328 44.88 1eny 268 45.65 2oi2A 292 45.75 1zbqA 327 46.42 c.2.1.2 124862 2g29A 417 46.73 1j1nA 492 47.77 c.94.1.1 83978 1v98A 140 48.14 1mf7A 194 48.34 c.62.1.1 84937 2aotA 292 48.42 c.66.1.19 127098 1hdcA 253 49.83 c.2.1.2 29862 2ihtA 573 50.51 1i24A 404 51.35 c.2.1.2 83663 3crrA 323 51.35 1m4tA 392 51.90 c.95.1.1,c.95.1.1 78617,78618 2iyfA 430 52.12 1kqpA 271 54.82 c.26.2.1 72883 2amlA 373 55.13 1ryiA 382 55.39 c.3.1.2,d.16.1.3 118813,118814 1s3iA 310 55.77 b.46.1.1,c.65.1.1 98435,98436 1chd 203 56.42 1xg5A 279 56.96 c.2.1.2 115277 1y8cA 246 57.53 c.66.1.43 116563 2h7mA 269 57.84 c.2.1.2 136219 1dtxA 59 59.24 g.8.1.1 44551 1yb0A 159 59.72 d.118.1.1 122865 1udcA 338 60.38 c.2.1.2 29785 2masA 314 60.70 c.70.1.1 34810 1xm7A 195 61.04 d.159.1.8 115473 2gh1A 301 61.11 c.66.1.49 135170 2pzmA 330 61.17 1ijbA 202 62.90 c.62.1.1 71229 2iyaA 424 63.35 2i87A 364 64.17 1o58A 303 64.30 c.79.1.1 92491 1nni1 174 65.26 1nhpA 447 65.49 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2qgnA 322 65.59 1zmoA 244 67.43 2p3rA 510 67.45 c.55.1.4,c.55.1.4 139471,139472 1ve1A 304 67.81 c.79.1.1 120007 1qgoA 264 68.69 c.92.1.2 35596 2p1zA 180 68.84 2dvtA 327 68.91 c.1.9.15 131793 1jx6A 342 69.66 c.93.1.1 67406 2jahA 247 69.73 1eceA 358 69.80 c.1.8.3 28813 1uzmA 247 70.25 c.2.1.2 119811 1iz0A 302 70.33 b.35.1.2,c.2.1.1 83821,83822 2b9wA 424 71.11 2e7zA 727 71.88 2hdyA 440 71.96 1moqA 368 72.55 c.80.1.1 35302 1qorA 327 72.83 b.35.1.2,c.2.1.1 24766,29782 1f3lA 321 75.15 c.66.1.6 59630 2bllA 345 75.88 c.2.1.2 128733 1odkA 235 76.20 c.56.2.1 86863 2f82A 450 76.32 2zf5O 497 77.00 2p8jA 209 77.10 1vhwA 253 77.35 c.56.2.1 100706 1usgA 346 77.78 c.93.1.1 99864 1wxiA 275 79.40 c.26.2.1 121400 2dtxA 264 79.58 1xttA 216 79.69 c.61.1.1 122300 1pswA 348 79.81 c.87.1.7 88287 2p8uA 478 81.03 1geeA 261 81.47 c.2.1.2 90509 2pezA 179 81.92 2hfsA 332 83.50 2ffeA 311 83.70 c.143.1.1 133381 1kngA 156 84.89 c.47.1.10 72777 2ew2A 316 85.31 1zsyA 357 85.31 2nuwA 288 85.39 1e0cA 271 85.48 c.46.1.2,c.46.1.2 32717,32718 1rxyA 253 86.51 c.56.2.1 98065 2jfkA 433 86.93 1w6uA 302 87.65 c.2.1.2 114288 2egxA 269 87.90 8abp 306 88.29 1hfoA 113 89.88 d.80.1.3 61006