# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.30e-26 c.69.1.25 77772 1vlqA 337 1.86e-25 c.69.1.25 108848 1lzlA 323 7.09e-25 c.69.1.2 78306 2z3zA 706 9.12e-25 1jkmA 358 1.16e-24 c.69.1.2 34633 1u4nA 310 2.02e-24 c.69.1.2 113021 2hu5A 582 2.10e-24 b.69.7.2,c.69.1.33 136763,136764 2hdwA 367 3.49e-24 2d5lA 706 3.91e-24 1u2eA 289 5.53e-24 2jbwA 386 7.15e-24 1orvA 728 9.98e-24 b.70.3.1,c.69.1.24 87354,87355 1jfrA 262 1.51e-23 c.69.1.16 34724 2og1A 286 1.88e-23 2o7rA 338 1.96e-23 1b6gA 310 2.06e-23 c.69.1.8 34661 3b5eA 223 2.93e-23 2uz0A 263 3.38e-23 2qm0A 275 3.82e-23 1zd3A 555 4.24e-23 c.108.1.2,c.69.1.11 124930,124931 2fx5A 258 4.72e-23 1b6g 310 4.92e-23 2rhwA 283 5.47e-23 1bn7A 294 5.50e-23 c.69.1.8 34677 2puhA 286 5.59e-23 2pujA 286 5.90e-23 1c4xA 285 6.25e-23 c.69.1.10 34684 2b61A 377 6.70e-23 2r11A 306 7.84e-23 1auoA 218 7.85e-23 c.69.1.14 34716 1jjiA 311 8.94e-23 c.69.1.2 66766 1h2wA 710 9.22e-23 b.69.7.1,c.69.1.4 76596,76597 1fj2A 232 9.59e-23 c.69.1.14 34720 1vkhA 273 1.05e-22 c.69.1.32 108662 1hlgA 371 1.20e-22 c.69.1.6 34656 2hm7A 310 1.26e-22 1uk8A 282 1.34e-22 c.69.1.10 107907 1q0rA 298 1.53e-22 c.69.1.28 95508 1wm1A 317 1.76e-22 c.69.1.7 109405 2o2gA 223 1.80e-22 1azwA 313 2.13e-22 c.69.1.7 34658 1zi8A 236 2.20e-22 1din 236 2.24e-22 1womA 271 2.35e-22 1jjfA 268 2.50e-22 c.69.1.2 66765 3bdiA 207 2.53e-22 1k8qA 377 2.56e-22 c.69.1.6 72177 2pl5A 366 2.73e-22 2b20A 403 3.57e-22 b.1.18.20,c.69.1.2 127685,127686 2bklA 695 3.82e-22 1ufoA 238 4.59e-22 c.69.1.27 99344 2qmqA 286 5.20e-22 2fukA 220 5.56e-22 1wb4A 297 5.61e-22 c.69.1.2 120827 2r8bA 251 5.69e-22 1o6gA 710 5.74e-22 b.69.7.1,c.69.1.4 81087,81088 3c8dA 403 5.86e-22 2i3dA 249 7.03e-22 1j1iA 296 7.24e-22 c.69.1.10 83977 1mtzA 293 7.67e-22 c.69.1.7 79467 1dqzA 280 7.87e-22 c.69.1.3 34638 2veoA 441 8.21e-22 1xqwA 293 8.57e-22 1lnsA 763 9.91e-22 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1zoiA 276 1.03e-21 3bxpA 277 1.04e-21 2ocgA 254 1.06e-21 1brt 277 1.08e-21 2e3jA 356 1.33e-21 1f0nA 285 1.36e-21 c.69.1.3 34636 1mj5A 302 1.40e-21 c.69.1.8 91285 2qruA 274 1.45e-21 1imjA 210 1.68e-21 c.69.1.23 71246 1pv1A 299 2.09e-21 c.69.1.34 111639 3bf7A 255 2.52e-21 1xklA 273 2.95e-21 c.69.1.20 115410 2cjpA 328 3.11e-21 1va4A 279 4.82e-21 c.69.1.12 108458 1a8qA 274 5.00e-21 c.69.1.12 34702 1y37A 304 5.06e-21 1hkhA 279 5.14e-21 c.69.1.12 90628 1a8sA 273 5.16e-21 c.69.1.12 34710 1qj4A 257 6.18e-21 c.69.1.20 34796 1brtA 277 6.82e-21 c.69.1.12 34699 1r88A 280 6.95e-21 c.69.1.3 97219 2o2iA 300 8.24e-21 3bwxA 285 8.76e-21 1mpxA 615 8.85e-21 b.18.1.13,c.69.1.21 85041,85042 2qvbA 297 1.03e-20 1ehyA 294 1.15e-20 c.69.1.11 34693 2psdA 318 1.20e-20 3c5vA 316 1.36e-20 2pblA 262 1.56e-20 1yr2A 741 1.70e-20 1r1dA 247 1.75e-20 c.69.1.29 96813 2yysA 286 2.58e-20 1qo7A 394 2.75e-20 c.69.1.11 34697 1tqhA 247 3.38e-20 c.69.1.29 107225 2gzsA 278 3.59e-20 1tcaA 317 8.04e-20 c.69.1.17 34726 1m33A 258 9.14e-20 c.69.1.26 78514 1ju3A 583 1.60e-19 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 7.54e-19 1cvlA 319 9.28e-19 c.69.1.18 34786 1pjaA 302 2.53e-18 c.69.1.13 94758 1qlwA 328 3.60e-18 c.69.1.15 34722 1ycdA 243 5.74e-18 1tca 317 8.09e-18 2ogtA 498 9.51e-18 2rauA 354 1.42e-17 1r3dA 264 1.58e-17 c.69.1.35 111680 2q0xA 335 2.97e-17 3bdvA 191 2.99e-17 1mnaA 298 5.12e-17 c.69.1.22 79322 1qe3A 489 5.20e-17 c.69.1.1 34630 2qjwA 176 6.44e-17 1ukcA 522 1.03e-16 c.69.1.17 107911 1llfA 534 1.95e-16 c.69.1.17 78094 1ei9A 279 2.93e-16 c.69.1.13 34713 1ys1X 320 3.05e-16 1ea5A 537 5.76e-16 c.69.1.1 34592 1ispA 181 1.09e-15 c.69.1.18 76778 1thgA 544 1.16e-15 c.69.1.17 34763 1p0iA 529 1.38e-15 c.69.1.1 93867 2qs9A 194 1.66e-15 1cvl 319 2.54e-15 1thg 544 5.28e-15 1bu8A 452 1.50e-14 b.12.1.2,c.69.1.19 23647,34795 1jmkC 230 2.10e-14 c.69.1.22 71747 1uxoA 192 2.11e-14 c.69.1.31 108121 1hplA 449 2.45e-14 b.12.1.2,c.69.1.19 23639,34787 2bceA 585 3.30e-14 c.69.1.1 34625 2px6A 316 4.03e-14 2h7cA 542 5.74e-14 c.69.1.1 136207 3bixA 574 7.02e-14 2bce 581 1.54e-13 2cb9A 244 2.06e-13 1thtA 305 3.42e-12 c.69.1.13 34711 1ivyA 452 2.50e-11 c.69.1.5 34654 2dsnA 387 2.39e-10 1ac5A 483 8.56e-08 c.69.1.5 34653 1ku0A 388 7.90e-07 c.69.1.18 72994 1uwcA 261 1.00e-06 c.69.1.17 100101 2z5gA 387 1.39e-06 1tib 269 2.60e-06 1cex 214 8.79e-06 2d80A 318 1.19e-05 1g66A 207 1.75e-05 c.69.1.30 31329 1whsA 255 3.75e-05 c.69.1.5 34649 1tibA 269 4.38e-05 c.69.1.17 34738 3tglA 269 5.15e-05 c.69.1.17 34733 1cexA 214 0.000128 c.69.1.30 31285 2d81A 318 0.000212 2czqA 205 0.000391 2oryA 346 0.000618 1edgA 380 0.07708 c.1.8.3 28807 1whsB 153 0.09251 2q7xA 326 1.528 2c2nA 339 2.573 1iirA 415 2.856 c.87.1.5 62453 1moq 368 3.492 1p3dA 475 4.046 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2ze7A 253 4.571 1o9gA 250 5.276 c.66.1.29 86692 2f5xA 312 5.509 1oxwA 373 5.965 c.19.1.3 87539 2bkaA 242 5.996 c.2.1.2 128666 3cjpA 272 6.425 2o2zA 323 6.944 2j3hA 345 7.959 1f0kA 364 8.753 c.87.1.2 35465 1tk9A 188 8.858 c.80.1.3 107082 3bhnA 236 9.669 2df8A 325 9.677 2vc7A 314 9.96 1htwA 158 10.07 c.37.1.18 71083 1ooeA 236 10.19 c.2.1.2 87196 2gs8A 317 10.64 1rrmA 386 10.83 e.22.1.2 105081 2gruA 368 11.18 3b55A 451 12.29 1zc6A 305 12.51 c.55.1.5,c.55.1.5 124888,124889 2yvuA 186 13.74 2ppwA 216 13.79 1eziA 228 13.90 c.68.1.13 34512 2qmoA 220 14.88 2dvzA 314 14.89 1x1tA 260 14.91 c.2.1.2 121597 2d4wA 504 15.94 2p91A 285 16.11 2qt1A 207 16.15 1bu6O 501 16.46 c.55.1.4,c.55.1.4 33499,33500 1fjhA 257 16.74 c.2.1.2 29870 1bf6A 291 17.61 c.1.9.3 29065 2cuyA 305 17.67 3c86A 328 18.07 2ppvA 332 18.41 1h72C 296 19.33 d.14.1.5,d.58.26.1 60712,60713 2gt1A 326 19.84 2dm6A 333 19.86 b.35.1.2,c.2.1.1 131567,131568 2qtwB 546 19.98 2gasA 307 20.16 1e6uA 321 20.26 c.2.1.2 29805 1wlyA 333 20.32 1e8cA 498 20.40 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1kpgA 287 20.43 c.66.1.18 68735 2z1mA 345 20.54 1xgkA 352 21.20 c.2.1.2 115286 2f2sA 406 21.24 1qwjA 229 21.36 c.68.1.13 96478 1v4vA 376 21.80 c.87.1.3 100313 2i49A 429 21.99 2e18A 257 22.34 2pk3A 321 22.39 2deoA 230 23.38 2z8xA 617 25.22 3c4vA 426 25.74 2fqxA 318 25.89 2ihtA 573 26.71 2i2wA 212 26.93 2p5yA 311 26.99 1ja9A 274 27.20 c.2.1.2 62817 1mjnA 179 27.89 c.62.1.1 79210 1mlaA 309 28.18 c.19.1.1,d.58.23.1 31031,39383 1o89A 345 28.39 b.35.1.2,c.2.1.1 92644,92645 2eihA 343 29.32 2cb0A 333 29.89 2jepA 395 31.44 1v98A 140 31.74 2yvaA 196 32.32 3crrA 323 32.54 1tcvA 287 33.49 2q7dA 346 33.54 1o58A 303 35.09 c.79.1.1 92491 1w3iA 293 35.12 c.1.10.1 109152 3c1oA 321 35.34 1eny 268 35.72 1gu7A 364 36.03 b.35.1.2,c.2.1.1 83321,83322 2a3nA 355 36.21 4uagA 437 36.72 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1mla 309 37.63 1xu9A 286 38.19 c.2.1.2 116052 1je0A 236 38.81 c.56.2.1 66581 1zmoA 244 39.02 1iz0A 302 39.61 b.35.1.2,c.2.1.1 83821,83822 2cdqA 510 39.75 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2dkfA 431 41.29 2cmd 312 41.36 2q62A 247 41.52 1vf8A 377 41.56 c.1.8.5,d.26.3.1 120029,120030 2f46A 156 41.57 2h1yA 321 41.79 1nni1 174 41.89 1gvfA 286 42.81 c.1.10.2 70599 1jx6A 342 42.97 c.93.1.1 67406 2gouA 365 43.11 2ae2A 260 43.16 c.2.1.2 29945 1tt7A 330 43.69 b.35.1.2,c.2.1.1 112623,112624 1qorA 327 44.23 b.35.1.2,c.2.1.1 24766,29782 1ml4A 308 44.86 c.78.1.1,c.78.1.1 79255,79256 2h7mA 269 45.58 c.2.1.2 136219 1x6vA 630 45.79 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1s3iA 310 46.45 b.46.1.1,c.65.1.1 98435,98436 2pocA 367 46.52 1y5mA 276 47.88 c.2.1.2 122645 1i52A 236 48.13 c.68.1.13 61767 2ac7A 235 49.45 c.56.2.1 126543 1rzuA 485 50.06 c.87.1.8 105140 1mf7A 194 50.83 c.62.1.1 84937 2iyfA 430 51.96 2oi2A 292 51.99 1v7zA 260 52.25 c.125.1.1 100488 2hfsA 332 52.95 2p3rA 510 54.11 c.55.1.4,c.55.1.4 139471,139472 1ijbA 202 54.23 c.62.1.1 71229 1xzwA 426 54.27 b.1.12.1,d.159.1.1 116270,116271 1y56B 382 54.46 1q6zA 528 54.61 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2ew2A 316 55.47 2bsxA 253 55.48 c.56.2.1 129128 2odtX 328 55.51 2qpqA 301 56.05 1j1nA 492 56.47 c.94.1.1 83978 1hdcA 253 56.84 c.2.1.2 29862 1w6uA 302 57.62 c.2.1.2 114288 1l3iA 192 57.65 c.66.1.22 77676 2c07A 285 57.76 c.2.1.2 129577 2uz1A 563 58.03 2pptA 155 58.34 1e5kA 201 58.75 c.68.1.8 34578 1i2cA 404 59.53 c.2.1.2 83666 1zbqA 327 60.03 c.2.1.2 124862 2dtxA 264 61.12 2qgnA 322 61.25 1ve1A 304 61.35 c.79.1.1 120007 1fmcA 255 61.35 c.2.1.2 29856 1nhpA 447 61.54 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2zf5O 497 62.17 2p8jA 209 62.38 2c1xA 456 62.83 2q5cA 196 63.00 1chd 203 64.78 2masA 314 65.00 c.70.1.1 34810 1k0fA 277 65.27 c.92.2.2 71974 1eceA 358 65.36 c.1.8.3 28813 2aotA 292 65.68 c.66.1.19 127098 2dplA 308 65.99 2j6pA 152 67.24 2dknA 255 67.33 1xahA 354 67.41 1y8cA 246 68.14 c.66.1.43 116563 2uytA 489 69.35 2p1zA 180 69.63 1wvgA 359 70.00 c.2.1.2 121339 2jahA 247 70.38 1vhwA 253 71.03 c.56.2.1 100706 1xg5A 279 71.34 c.2.1.2 115277 1gkpA 458 71.83 b.92.1.3,c.1.9.6 70231,70232 1g0oA 283 71.96 c.2.1.2 60181 1i24A 404 72.12 c.2.1.2 83663 2v6gA 364 72.22 2yvdA 431 72.72 1pswA 348 73.05 c.87.1.7 88287 2r7aA 256 73.23 2g29A 417 73.37 1qgoA 264 73.67 c.92.1.2 35596 1uluA 261 73.69 c.2.1.2 113292 2nm0A 253 74.31 1yb4A 295 74.94 2v7pA 310 75.94 1wxiA 275 76.38 c.26.2.1 121400 1odkA 235 76.97 c.56.2.1 86863 1f3lA 321 77.39 c.66.1.6 59630 1zr0B 63 77.60 1nffA 260 77.78 c.2.1.2 80457 3c3jA 384 78.15 1e0cA 271 78.96 c.46.1.2,c.46.1.2 32717,32718 2bllA 345 80.81 c.2.1.2 128733 2e7zA 727 80.90 1kqpA 271 81.06 c.26.2.1 72883 1yb0A 159 81.31 d.118.1.1 122865 1tvnA 293 83.43 c.1.8.3 119360 1rxyA 253 83.98 c.56.2.1 98065 1m4tA 392 84.12 c.95.1.1,c.95.1.1 78617,78618 1byi 224 84.45 1uzmA 247 85.02 c.2.1.2 119811 1xm7A 195 86.46 d.159.1.8 115473 1dtxA 59 86.67 g.8.1.1 44551 1oroA 213 87.05 c.61.1.1 34093 2b1kA 168 87.77 2ffeA 311 87.81 c.143.1.1 133381 1zm0A 114 88.12 b.55.1.1 125276 2cksA 306 88.33 2egxA 269 88.63 1hgxA 183 89.23 c.61.1.1 34027 2p8uA 478 89.49