# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.21e-17 c.69.1.25 77772 1u4nA 310 1.41e-16 c.69.1.2 113021 1zi8A 236 1.66e-16 1u2eA 289 1.98e-16 1lzlA 323 1.98e-16 c.69.1.2 78306 1b6gA 310 2.23e-16 c.69.1.8 34661 2hdwA 367 2.43e-16 2z3zA 706 2.53e-16 1din 236 2.56e-16 2b61A 377 2.59e-16 1vlqA 337 2.60e-16 c.69.1.25 108848 2d5lA 706 2.80e-16 1q0rA 298 2.87e-16 c.69.1.28 95508 2o7rA 338 2.96e-16 2pujA 286 3.23e-16 2i3dA 249 3.43e-16 1zd3A 555 3.43e-16 c.108.1.2,c.69.1.11 124930,124931 2jbwA 386 3.63e-16 1fj2A 232 4.21e-16 c.69.1.14 34720 1b6g 310 4.27e-16 2rhwA 283 4.56e-16 2o2gA 223 4.62e-16 3b5eA 223 4.93e-16 1jfrA 262 4.99e-16 c.69.1.16 34724 2og1A 286 5.06e-16 1c4xA 285 5.53e-16 c.69.1.10 34684 1ufoA 238 6.05e-16 c.69.1.27 99344 2puhA 286 6.13e-16 1k8qA 377 6.16e-16 c.69.1.6 72177 2e3jA 356 6.33e-16 1hlgA 371 6.54e-16 c.69.1.6 34656 2uz0A 263 6.82e-16 1jkmA 358 6.90e-16 c.69.1.2 34633 1bn7A 294 7.25e-16 c.69.1.8 34677 1auoA 218 9.30e-16 c.69.1.14 34716 3bdiA 207 9.60e-16 2pl5A 366 9.66e-16 2ocgA 254 1.01e-15 1vkhA 273 1.07e-15 c.69.1.32 108662 1womA 271 1.08e-15 2qm0A 275 1.20e-15 1uk8A 282 1.22e-15 c.69.1.10 107907 2r11A 306 1.34e-15 2fx5A 258 1.34e-15 2qruA 274 1.36e-15 1j1iA 296 1.47e-15 c.69.1.10 83977 1imjA 210 1.52e-15 c.69.1.23 71246 1azwA 313 1.62e-15 c.69.1.7 34658 3bxpA 277 1.83e-15 1orvA 728 2.01e-15 b.70.3.1,c.69.1.24 87354,87355 1f0nA 285 2.18e-15 c.69.1.3 34636 2fukA 220 2.24e-15 1zoiA 276 2.53e-15 1pv1A 299 2.62e-15 c.69.1.34 111639 2cjpA 328 2.94e-15 1xqwA 293 3.14e-15 1wm1A 317 3.33e-15 c.69.1.7 109405 3bf7A 255 3.34e-15 1y37A 304 3.44e-15 2hu5A 582 3.58e-15 b.69.7.2,c.69.1.33 136763,136764 2qmqA 286 3.61e-15 1mj5A 302 3.83e-15 c.69.1.8 91285 1mtzA 293 3.91e-15 c.69.1.7 79467 1va4A 279 4.12e-15 c.69.1.12 108458 1wb4A 297 5.14e-15 c.69.1.2 120827 1r1dA 247 7.32e-15 c.69.1.29 96813 3bwxA 285 7.60e-15 2pblA 262 7.62e-15 2psdA 318 7.69e-15 2hm7A 310 8.38e-15 1dqzA 280 8.94e-15 c.69.1.3 34638 1brt 277 9.33e-15 3c5vA 316 1.04e-14 1jjfA 268 1.08e-14 c.69.1.2 66765 1jjiA 311 1.14e-14 c.69.1.2 66766 3c8dA 403 1.15e-14 1a8qA 274 1.16e-14 c.69.1.12 34702 1ehyA 294 1.28e-14 c.69.1.11 34693 2qvbA 297 1.28e-14 1tqhA 247 1.56e-14 c.69.1.29 107225 2b20A 403 1.67e-14 b.1.18.20,c.69.1.2 127685,127686 1xklA 273 1.89e-14 c.69.1.20 115410 2r8bA 251 1.91e-14 1a8sA 273 1.94e-14 c.69.1.12 34710 1r88A 280 1.98e-14 c.69.1.3 97219 1hkhA 279 2.09e-14 c.69.1.12 90628 2o2iA 300 2.95e-14 2yysA 286 3.01e-14 1brtA 277 3.14e-14 c.69.1.12 34699 1qj4A 257 3.62e-14 c.69.1.20 34796 1mpxA 615 5.04e-14 b.18.1.13,c.69.1.21 85041,85042 1qo7A 394 5.68e-14 c.69.1.11 34697 2gzsA 278 5.99e-14 2hfkA 319 6.14e-14 2veoA 441 7.25e-14 1m33A 258 9.64e-14 c.69.1.26 78514 2bklA 695 1.26e-13 1ju3A 583 1.72e-13 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 2.01e-13 c.69.1.17 34726 1h2wA 710 2.61e-13 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 2.74e-13 b.69.7.1,c.69.1.4 81087,81088 2q0xA 335 9.67e-13 1qlwA 328 9.71e-13 c.69.1.15 34722 1mnaA 298 1.17e-12 c.69.1.22 79322 2rauA 354 1.31e-12 1r3dA 264 1.32e-12 c.69.1.35 111680 1ycdA 243 1.42e-12 1yr2A 741 2.33e-12 1tca 317 3.43e-12 1pjaA 302 5.74e-12 c.69.1.13 94758 1cvlA 319 6.49e-12 c.69.1.18 34786 2ogtA 498 9.21e-12 1qe3A 489 9.92e-12 c.69.1.1 34630 3bdvA 191 1.15e-11 2qjwA 176 2.24e-11 1lnsA 763 2.76e-11 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ei9A 279 4.24e-11 c.69.1.13 34713 1ea5A 537 5.53e-11 c.69.1.1 34592 1ys1X 320 5.73e-11 1ukcA 522 6.80e-11 c.69.1.17 107911 1ispA 181 9.51e-11 c.69.1.18 76778 1llfA 534 1.62e-10 c.69.1.17 78094 1bu8A 452 1.65e-10 b.12.1.2,c.69.1.19 23647,34795 1p0iA 529 1.84e-10 c.69.1.1 93867 1hplA 449 1.96e-10 b.12.1.2,c.69.1.19 23639,34787 2px6A 316 2.51e-10 2qs9A 194 2.57e-10 1cvl 319 2.66e-10 1jmkC 230 3.60e-10 c.69.1.22 71747 1thgA 544 9.31e-10 c.69.1.17 34763 2cb9A 244 2.46e-09 1thtA 305 2.55e-09 c.69.1.13 34711 2bceA 585 2.78e-09 c.69.1.1 34625 3bixA 574 3.19e-09 1thg 544 4.54e-09 2h7cA 542 7.09e-09 c.69.1.1 136207 1uxoA 192 7.61e-09 c.69.1.31 108121 2bce 581 9.47e-09 1ivyA 452 1.38e-07 c.69.1.5 34654 2dsnA 387 3.24e-06 1ac5A 483 4.92e-06 c.69.1.5 34653 2z5gA 387 2.75e-05 1cex 214 0.000139 1ku0A 388 0.000158 c.69.1.18 72994 2d80A 318 0.000474 1cexA 214 0.000721 c.69.1.30 31285 1uwcA 261 0.000742 c.69.1.17 100101 1g66A 207 0.001269 c.69.1.30 31329 1tib 269 0.001379 2d81A 318 0.004135 2czqA 205 0.004622 3tglA 269 0.006541 c.69.1.17 34733 1whsA 255 0.007699 c.69.1.5 34649 1tibA 269 0.008502 c.69.1.17 34738 2oryA 346 0.01899 1edgA 380 0.7115 c.1.8.3 28807 1whsB 153 1.493 2c2nA 339 2.828 1ir6A 424 3.979 c.107.1.2 71342 2jepA 395 5.094 2i49A 429 5.589 2r6r1 338 5.725 1o9gA 250 5.971 c.66.1.29 86692 1oxwA 373 7.110 c.19.1.3 87539 2bcoA 350 7.326 c.56.5.7 128302 2cuyA 305 7.822 2df8A 325 7.952 1tvnA 293 8.076 c.1.8.3 119360 2c1xA 456 8.152 1iirA 415 8.503 c.87.1.5 62453 1v4vA 376 8.531 c.87.1.3 100313 2h1yA 321 9.251 2p6pA 384 9.670 3cdxA 354 10.50 1zbqA 327 10.77 c.2.1.2 124862 2d4wA 504 11.24 1moq 368 11.46 1f0kA 364 14.80 c.87.1.2 35465 1h72C 296 15.27 d.14.1.5,d.58.26.1 60712,60713 1x1tA 260 15.37 c.2.1.2 121597 2iyaA 424 16.13 1pswA 348 16.67 c.87.1.7 88287 3co4A 312 17.96 1kpgA 287 18.96 c.66.1.18 68735 2z8xA 617 19.60 2jfnA 285 20.00 1mlaA 309 20.25 c.19.1.1,d.58.23.1 31031,39383 1w3iA 293 20.52 c.1.10.1 109152 2iv2X 715 22.05 b.52.2.2,c.81.1.1 137714,137715 1l5xA 280 22.69 c.106.1.1 77718 1mjnA 179 22.78 c.62.1.1 79210 1bu6O 501 22.79 c.55.1.4,c.55.1.4 33499,33500 2iyfA 430 22.95 1j9lA 247 23.15 c.106.1.1 62762 1vf8A 377 24.70 c.1.8.5,d.26.3.1 120029,120030 3ca8A 266 25.02 2f5xA 312 25.15 2pq6A 482 25.78 2yvdA 431 26.07 2r91A 286 26.16 1rq2A 382 26.20 c.32.1.1,d.79.2.1 105048,105049 2c40A 312 26.76 3b9gA 328 26.77 1j1nA 492 27.04 c.94.1.1 83978 1w5fA 353 27.10 c.32.1.1,d.79.2.1 114247,114248 2dkfA 431 27.18 1nm2A 317 27.49 c.19.1.1,d.58.23.1 80654,80655 1edtA 271 27.56 c.1.8.5 28993 2vchA 480 27.85 2qtwB 546 31.39 2amlA 373 32.09 1qgoA 264 34.04 c.92.1.2 35596 1y8cA 246 34.28 c.66.1.43 116563 2pocA 367 35.04 1mla 309 35.33 2i7vA 459 35.35 1d7oA 297 36.09 c.2.1.2 29907 2ae2A 260 36.27 c.2.1.2 29945 2cl5A 221 36.46 c.66.1.1 130570 1fjhA 257 36.76 c.2.1.2 29870 2e5fA 325 37.00 2acvA 463 37.20 2qgmA 445 37.53 1pwxA 254 38.01 c.2.1.2 95262 2dwuA 276 39.04 3c3pA 210 39.04 3b55A 451 39.21 2hfsA 332 39.37 1zmtA 254 39.81 c.2.1.2 125363 1udcA 338 40.38 c.2.1.2 29785 1zmoA 244 40.55 2zf5O 497 41.30 2e6cA 244 41.55 1ja9A 274 41.98 c.2.1.2 62817 1gl6A 436 42.16 c.37.1.11 70259 2ph3A 245 42.61 1fmcA 255 42.79 c.2.1.2 29856 1moqA 368 43.01 c.80.1.1 35302 2qmoA 220 43.67 1l6rA 227 43.76 c.108.1.10 77768 1qnrA 344 44.30 c.1.8.3 28834 1q6zA 528 44.87 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1k47A 337 45.01 d.14.1.5,d.58.26.4 72040,72041 1g0cA 364 45.45 c.1.8.3 60165 3bzwA 274 45.55 1rrvA 416 45.59 c.87.1.5 105083 1oj4A 283 46.04 d.14.1.5,d.58.26.5 93083,93084 1cjcA 460 47.79 c.3.1.1,c.4.1.1 30319,30604 2dtxA 264 48.17 2p4hX 322 48.23 2g29A 417 49.29 2p91A 285 49.34 1m6iA 493 50.02 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2c5aA 379 50.46 c.2.1.2 129894 2jahA 247 50.59 1wraA 308 50.64 d.157.1.8 121190 2vapA 364 50.64 1eziA 228 51.40 c.68.1.13 34512 1uluA 261 52.04 c.2.1.2 113292 1hdcA 253 52.17 c.2.1.2 29862 2cb0A 333 52.40 2f9sA 151 52.60 c.47.1.10 133168 3crrA 323 52.76 2v9dA 343 53.01 1h5qA 265 53.73 c.2.1.2 60643 2qj8A 332 53.95 2phjA 251 54.39 2yvuA 186 54.40 2btoA 473 54.92 2r8wA 332 55.41 7a3hA 303 55.47 c.1.8.3 28817 1nffA 260 56.01 c.2.1.2 80457 1hdhA 536 56.07 c.76.1.2 65805 1dl5A 317 56.76 c.66.1.7,d.197.1.1 64720,64721 1j93A 353 56.83 c.1.22.1 66454 2pg9A 337 56.93 1xu9A 286 57.01 c.2.1.2 116052 1x7gA 261 58.18 c.2.1.2 114929 1ooeA 236 58.54 c.2.1.2 87196 2cmd 312 58.75 3c8uA 208 59.12 1zl0A 311 59.52 c.8.10.1,c.23.16.7 125231,125232 1zuwA 272 61.01 1i24A 404 61.13 c.2.1.2 83663 1e7wA 291 61.20 c.2.1.2 59373 2q1sA 377 62.44 2v6gA 364 62.81 1eceA 358 63.14 c.1.8.3 28813 2az4A 429 63.60 d.157.1.10 127597 1hp1A 516 63.63 d.114.1.1,d.159.1.2 70976,70977 1e6wA 260 63.85 c.2.1.2 59326 3b3fA 341 63.87 2p3rA 510 63.96 c.55.1.4,c.55.1.4 139471,139472 1byiA 224 64.54 c.37.1.10 32199 1uhgA 385 64.85 e.1.1.1 88491 1or8A 340 65.38 c.66.1.6 93451 1vl8A 267 65.90 c.2.1.2 108733 3c3jA 384 66.37 2a4kA 263 66.37 c.2.1.2 126156 1y5mA 276 66.80 c.2.1.2 122645 1ooyA 481 67.40 c.124.1.3,c.124.1.2 93388,93389 1yxaA 398 67.42 1ijbA 202 67.66 c.62.1.1 71229 1wvgA 359 68.86 c.2.1.2 121339 1wkyA 464 69.00 b.18.1.31,c.1.8.3 120992,120993 1jpkA 388 69.23 c.1.22.1 67026 1c93A 265 69.23 c.1.8.5 28998 1uekA 275 70.45 d.14.1.5,d.58.26.5 88483,88484 1y56B 382 70.49 1r59O 505 70.77 c.55.1.4,c.55.1.4 111697,111698 2odfA 257 71.15 2v3vA 723 71.73 2pzmA 330 71.87 1xgkA 352 71.93 c.2.1.2 115286 2o2yA 349 72.21 c.2.1.2 138894 2pi6A 361 72.31 1pvdA 537 72.49 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2qxlA 658 72.55 1wy0A 342 72.66 2bllA 345 73.37 c.2.1.2 128733 2gasA 307 73.38 2am1A 454 73.54 2bgkA 278 73.76 c.2.1.2 128480 1bdbA 277 74.23 c.2.1.2 29874 2qgnA 322 74.29 2v74B 346 74.74 1bdb 277 74.84 1w4xA 542 75.43 c.3.1.5,c.3.1.5 109171,109172 2nm0A 253 76.26 2qcuA 501 76.26 2oosA 338 76.32 2bogX 286 76.80 2c29D 337 77.10 1yw4A 341 77.24 c.56.5.7 124131 2r6jA 318 77.32 1sznA 417 77.47 b.71.1.1,c.1.8.1 106162,106163 1gegA 256 77.63 c.2.1.2 29888 1wx1A 335 77.79 2djiA 590 77.91 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1geeA 261 78.45 c.2.1.2 90509 1v6tA 255 79.65 c.6.2.5 113550 1kfcA 268 80.27 c.1.2.4 77371 2ekpA 239 80.38 1k2wA 256 80.51 c.2.1.2 90927 1e0cA 271 80.83 c.46.1.2,c.46.1.2 32717,32718 1d3vA 323 81.55 c.42.1.1 32559 1t70A 255 81.56 d.159.1.9 112275 2h7mA 269 82.51 c.2.1.2 136219 2cfcA 250 83.14 2pk3A 321 84.27 3c1oA 321 84.64 1r6dA 337 84.83 c.2.1.2 97148 2aqjA 538 85.87 1yoeA 322 85.92 2qubA 615 86.26 1eny 268 86.48 1xfkA 336 86.54 c.42.1.1 115264 2nuwA 288 87.23 2e57A 637 87.28 3ch0A 272 87.69 1qopA 268 87.89 c.1.2.4 28570 2oi2A 292 88.02 2jfkA 433 88.84 2masA 314 89.26 c.70.1.1 34810 2dejA 350 89.50