# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 5.21e-20 c.69.1.25 77772 1vlqA 337 6.26e-19 c.69.1.25 108848 2z3zA 706 1.18e-18 1lzlA 323 1.31e-18 c.69.1.2 78306 2d5lA 706 1.64e-18 2hdwA 367 1.83e-18 2jbwA 386 2.12e-18 1jkmA 358 5.08e-18 c.69.1.2 34633 2hu5A 582 5.08e-18 b.69.7.2,c.69.1.33 136763,136764 1jfrA 262 5.27e-18 c.69.1.16 34724 1u2eA 289 6.35e-18 1b6gA 310 7.93e-18 c.69.1.8 34661 2og1A 286 9.43e-18 1orvA 728 1.14e-17 b.70.3.1,c.69.1.24 87354,87355 1u4nA 310 1.19e-17 c.69.1.2 113021 1zd3A 555 1.23e-17 c.108.1.2,c.69.1.11 124930,124931 2puhA 286 1.24e-17 1fj2A 232 1.26e-17 c.69.1.14 34720 2rhwA 283 1.26e-17 2pujA 286 1.26e-17 3b5eA 223 1.48e-17 2fx5A 258 1.55e-17 1b6g 310 1.64e-17 3bdiA 207 1.64e-17 2o7rA 338 1.68e-17 2i3dA 249 1.95e-17 1zi8A 236 2.12e-17 2o2gA 223 2.53e-17 2b61A 377 2.58e-17 1uk8A 282 2.60e-17 c.69.1.10 107907 1q0rA 298 3.30e-17 c.69.1.28 95508 2qm0A 275 3.56e-17 1din 236 3.57e-17 1k8qA 377 3.66e-17 c.69.1.6 72177 1hlgA 371 3.66e-17 c.69.1.6 34656 2r11A 306 4.30e-17 1bn7A 294 4.36e-17 c.69.1.8 34677 3bxpA 277 4.54e-17 1c4xA 285 4.73e-17 c.69.1.10 34684 1imjA 210 5.29e-17 c.69.1.23 71246 2uz0A 263 5.52e-17 2ocgA 254 5.55e-17 2fukA 220 6.20e-17 1zoiA 276 6.26e-17 1auoA 218 6.32e-17 c.69.1.14 34716 2e3jA 356 6.98e-17 1vkhA 273 8.65e-17 c.69.1.32 108662 1ufoA 238 9.56e-17 c.69.1.27 99344 1j1iA 296 1.05e-16 c.69.1.10 83977 1womA 271 1.08e-16 2pl5A 366 1.09e-16 1azwA 313 1.10e-16 c.69.1.7 34658 2veoA 441 1.22e-16 1jjfA 268 1.23e-16 c.69.1.2 66765 1va4A 279 1.27e-16 c.69.1.12 108458 2qmqA 286 1.33e-16 3c8dA 403 1.52e-16 1brt 277 1.59e-16 1jjiA 311 1.62e-16 c.69.1.2 66766 1wm1A 317 1.89e-16 c.69.1.7 109405 2qruA 274 1.92e-16 1f0nA 285 1.95e-16 c.69.1.3 34636 2cjpA 328 2.06e-16 1a8sA 273 2.21e-16 c.69.1.12 34710 2b20A 403 2.24e-16 b.1.18.20,c.69.1.2 127685,127686 2r8bA 251 2.38e-16 1pv1A 299 2.43e-16 c.69.1.34 111639 1mj5A 302 2.98e-16 c.69.1.8 91285 2hm7A 310 3.02e-16 1mtzA 293 3.13e-16 c.69.1.7 79467 1r1dA 247 3.50e-16 c.69.1.29 96813 1xqwA 293 3.74e-16 1wb4A 297 3.84e-16 c.69.1.2 120827 1tqhA 247 3.93e-16 c.69.1.29 107225 2pblA 262 4.02e-16 1hkhA 279 4.16e-16 c.69.1.12 90628 2bklA 695 4.36e-16 1h2wA 710 4.77e-16 b.69.7.1,c.69.1.4 76596,76597 3bf7A 255 4.83e-16 1a8qA 274 5.51e-16 c.69.1.12 34702 1brtA 277 5.63e-16 c.69.1.12 34699 2o2iA 300 7.31e-16 1y37A 304 7.59e-16 3bwxA 285 7.73e-16 3c5vA 316 9.34e-16 1dqzA 280 1.18e-15 c.69.1.3 34638 1xklA 273 1.25e-15 c.69.1.20 115410 1ehyA 294 1.29e-15 c.69.1.11 34693 1o6gA 710 1.37e-15 b.69.7.1,c.69.1.4 81087,81088 1mpxA 615 1.42e-15 b.18.1.13,c.69.1.21 85041,85042 1r88A 280 1.73e-15 c.69.1.3 97219 1qo7A 394 1.80e-15 c.69.1.11 34697 2qvbA 297 1.88e-15 2psdA 318 2.08e-15 2gzsA 278 3.43e-15 2yysA 286 4.47e-15 1qj4A 257 4.63e-15 c.69.1.20 34796 1ju3A 583 7.52e-15 b.18.1.13,c.69.1.21 67300,67301 1m33A 258 8.16e-15 c.69.1.26 78514 2hfkA 319 8.85e-15 1yr2A 741 1.22e-14 1lnsA 763 1.45e-14 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1tcaA 317 2.33e-14 c.69.1.17 34726 1qlwA 328 2.82e-14 c.69.1.15 34722 2rauA 354 9.85e-14 1r3dA 264 1.55e-13 c.69.1.35 111680 2ogtA 498 1.60e-13 1ycdA 243 1.71e-13 1mnaA 298 2.62e-13 c.69.1.22 79322 1qe3A 489 3.39e-13 c.69.1.1 34630 1tca 317 3.89e-13 2qjwA 176 4.22e-13 2q0xA 335 4.35e-13 1cvlA 319 8.36e-13 c.69.1.18 34786 1llfA 534 1.12e-12 c.69.1.17 78094 1pjaA 302 1.12e-12 c.69.1.13 94758 1ea5A 537 1.72e-12 c.69.1.1 34592 3bdvA 191 2.09e-12 1ukcA 522 2.17e-12 c.69.1.17 107911 1p0iA 529 3.66e-12 c.69.1.1 93867 1ispA 181 7.44e-12 c.69.1.18 76778 1thgA 544 1.03e-11 c.69.1.17 34763 1cvl 319 1.87e-11 2qs9A 194 3.64e-11 1ei9A 279 4.69e-11 c.69.1.13 34713 3bixA 574 5.32e-11 1bu8A 452 6.33e-11 b.12.1.2,c.69.1.19 23647,34795 2px6A 316 7.08e-11 1ys1X 320 7.62e-11 2h7cA 542 8.23e-11 c.69.1.1 136207 2bceA 585 9.32e-11 c.69.1.1 34625 1uxoA 192 1.51e-10 c.69.1.31 108121 1hplA 449 1.62e-10 b.12.1.2,c.69.1.19 23639,34787 1jmkC 230 3.42e-10 c.69.1.22 71747 1thg 544 4.73e-10 2bce 581 5.93e-10 1thtA 305 9.76e-10 c.69.1.13 34711 2cb9A 244 2.01e-09 1ivyA 452 3.75e-09 c.69.1.5 34654 1ac5A 483 1.97e-06 c.69.1.5 34653 2dsnA 387 9.10e-06 2z5gA 387 6.15e-05 1ku0A 388 0.000204 c.69.1.18 72994 1cex 214 0.000215 1tib 269 0.000256 1uwcA 261 0.000270 c.69.1.17 100101 2d80A 318 0.000291 1whsA 255 0.000620 c.69.1.5 34649 1cexA 214 0.000652 c.69.1.30 31285 3tglA 269 0.000849 c.69.1.17 34733 1tibA 269 0.000977 c.69.1.17 34738 1g66A 207 0.001162 c.69.1.30 31329 2czqA 205 0.002388 2d81A 318 0.003819 2oryA 346 0.006706 1edgA 380 0.1609 c.1.8.3 28807 2df8A 325 2.821 2jepA 395 3.007 1tvnA 293 3.234 c.1.8.3 119360 1whsB 153 3.518 2c2nA 339 4.336 1o9gA 250 5.287 c.66.1.29 86692 7a3hA 303 5.377 c.1.8.3 28817 1moq 368 8.366 2i49A 429 8.760 1oxwA 373 8.802 c.19.1.3 87539 2pocA 367 9.478 2uz1A 563 11.24 1qgoA 264 13.20 c.92.1.2 35596 2qtwB 546 13.53 3b55A 451 13.64 2cb0A 333 13.68 2j3hA 345 14.29 2vc7A 314 14.99 2e6cA 244 15.48 1l5xA 280 15.66 c.106.1.1 77718 1j0aA 325 15.78 c.79.1.1 83871 2h1yA 321 16.04 1j9lA 247 16.40 c.106.1.1 62762 1w5fA 353 17.70 c.32.1.1,d.79.2.1 114247,114248 2ez9A 603 19.26 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1mjnA 179 19.32 c.62.1.1 79210 1ooeA 236 19.83 c.2.1.2 87196 2p91A 285 20.32 1ijbA 202 21.17 c.62.1.1 71229 1xgkA 352 22.28 c.2.1.2 115286 2r6r1 338 22.31 1i52A 236 22.74 c.68.1.13 61767 1moqA 368 22.98 c.80.1.1 35302 3crrA 323 23.12 2masA 314 23.36 c.70.1.1 34810 1edtA 271 23.66 c.1.8.5 28993 2f5xA 312 23.69 2qmoA 220 24.23 2nm0A 253 24.24 2pk3A 321 24.29 1vhwA 253 24.50 c.56.2.1 100706 1ybhA 590 26.03 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2d4wA 504 26.16 1mlaA 309 26.19 c.19.1.1,d.58.23.1 31031,39383 2gasA 307 26.37 2vchA 480 26.48 2i7vA 459 26.66 1wohA 305 26.94 c.42.1.1 109446 2hxvA 360 27.52 c.71.1.2,c.97.1.2 136859,136860 1zbqA 327 28.80 c.2.1.2 124862 2v9dA 343 28.98 2e5fA 325 30.05 1mla 309 30.34 1eziA 228 30.38 c.68.1.13 34512 1bu6O 501 30.57 c.55.1.4,c.55.1.4 33499,33500 1e5kA 201 31.11 c.68.1.8 34578 2r8wA 332 31.15 2vbfA 570 31.20 2az4A 429 31.97 d.157.1.10 127597 2dkfA 431 32.26 2ekpA 239 32.68 2ze7A 253 33.20 1gu7A 364 33.61 b.35.1.2,c.2.1.1 83321,83322 2cuyA 305 33.65 1d7oA 297 35.17 c.2.1.2 29907 2p4hX 322 35.53 1kpgA 287 36.04 c.66.1.18 68735 2i87A 364 36.25 1h5qA 265 36.53 c.2.1.2 60643 1zsxA 347 36.56 1g0cA 364 36.68 c.1.8.3 60165 1w3iA 293 36.78 c.1.10.1 109152 2qgmA 445 37.44 2c40A 312 37.70 1ir6A 424 37.77 c.107.1.2 71342 2odfA 257 38.11 1eny 268 38.67 2bllA 345 38.75 c.2.1.2 128733 1bf6A 291 38.90 c.1.9.3 29065 2phjA 251 39.09 1zmoA 244 39.27 1r6dA 337 39.46 c.2.1.2 97148 3b9gA 328 39.50 2ihtA 573 39.57 1eceA 358 40.24 c.1.8.3 28813 1wkyA 464 40.32 b.18.1.31,c.1.8.3 120992,120993 1nm2A 317 41.07 c.19.1.1,d.58.23.1 80654,80655 2acvA 463 41.19 2fr1A 486 41.22 c.2.1.2,c.2.1.2 133961,133962 1tcvA 287 41.60 2djiA 590 41.64 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2jfnA 285 41.98 1byiA 224 42.03 c.37.1.10 32199 1zmtA 254 42.04 c.2.1.2 125363 1x9iA 302 42.22 c.80.1.1 114997 1hl2A 297 42.37 c.1.10.1 83581 2dm6A 333 42.55 b.35.1.2,c.2.1.1 131567,131568 2gk4A 232 42.63 2pi6A 361 43.79 1v4vA 376 45.01 c.87.1.3 100313 1y8cA 246 45.33 c.66.1.43 116563 1fjhA 257 45.66 c.2.1.2 29870 2yvdA 431 46.28 1mf7A 194 46.28 c.62.1.1 84937 2z1mA 345 46.35 2v6gA 364 46.51 1ozhA 566 46.65 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2pq6A 482 46.67 2pzmA 330 46.92 1xkyA 301 46.92 c.1.10.1 122094 3c1oA 321 47.94 2iyfA 430 48.09 1gkrA 458 48.21 b.92.1.3,c.1.9.6 70251,70252 1pwhA 327 48.57 c.79.1.1 95224 1e6wA 260 48.68 c.2.1.2 59326 1i2cA 404 49.07 c.2.1.2 83666 2dvzA 314 49.35 1j1nA 492 49.71 c.94.1.1 83978 2a3nA 355 49.72 2z8xA 617 49.76 2qahA 303 50.40 1ionA 243 50.87 c.37.1.10 62633 1uluA 261 51.08 c.2.1.2 113292 1yoeA 322 51.20 1qorA 327 52.09 b.35.1.2,c.2.1.1 24766,29782 1rxyA 253 52.36 c.56.2.1 98065 1h1dA 221 53.00 c.66.1.1 83452 1f0kA 364 53.33 c.87.1.2 35465 2pgfA 371 53.42 2zf5O 497 54.39 1kqpA 271 54.62 c.26.2.1 72883 1uteA 313 55.35 d.159.1.1 42078 2cksA 306 55.44 1okgA 373 55.94 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2c5aA 379 56.18 c.2.1.2 129894 2h7mA 269 56.31 c.2.1.2 136219 1yw4A 341 56.74 c.56.5.7 124131 2bsxA 253 57.19 c.56.2.1 129128 2e18A 257 57.42 1rq2A 382 57.73 c.32.1.1,d.79.2.1 105048,105049 2csuA 457 57.82 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1v71A 323 58.27 c.79.1.1 119859 1chd 203 58.27 2q71A 356 59.03 1wvgA 359 59.83 c.2.1.2 121339 1x1tA 260 60.25 c.2.1.2 121597 1h1nA 305 60.59 c.1.8.3 70855 2qgnA 322 60.64 2c07A 285 61.23 c.2.1.2 129577 2jhfA 374 61.57 b.35.1.2,c.2.1.1 138314,138315 3bk2A 562 61.63 2a4kA 263 62.04 c.2.1.2 126156 2amlA 373 62.37 2gs8A 317 62.69 1ryiA 382 62.75 c.3.1.2,d.16.1.3 118813,118814 1kcxA 518 63.53 b.92.1.3,c.1.9.6 90953,90954 1ve5A 311 63.89 c.79.1.1 120013 1pwxA 254 63.98 c.2.1.2 95262 1i24A 404 64.50 c.2.1.2 83663 1iirA 415 65.07 c.87.1.5 62453 1n3yA 198 65.07 c.62.1.1 79976 2dtxA 264 66.34 3cdxA 354 66.45 2p5yA 311 66.91 1atzA 189 67.91 c.62.1.1 34132 1yacA 208 68.42 c.33.1.3 31757 1udcA 338 68.83 c.2.1.2 29785 2cl5A 221 69.26 c.66.1.1 130570 1je0A 236 69.61 c.56.2.1 66581 1exbA 332 70.15 c.1.7.1 28666 2pc8A 400 70.32 1rkqA 282 71.27 c.108.1.10 97621 3c3jA 384 72.22 1wlyA 333 72.26 1c93A 265 72.43 c.1.8.5 28998 2bw0A 329 73.94 b.46.1.1,c.65.1.1 129303,129304 2p3rA 510 74.18 c.55.1.4,c.55.1.4 139471,139472 2nuwA 288 74.46 1lqaA 346 75.02 c.1.7.1 84674 2atsA 292 75.06 c.1.10.1 127306 1tk9A 188 75.42 c.80.1.3 107082 1q8fA 313 75.58 c.70.1.1 96203 1xu9A 286 75.61 c.2.1.2 116052 3cvjA 243 75.66 1k1eA 180 75.83 c.108.1.5 67995 2am1A 454 76.04 2zbwA 335 76.35 2p8jA 209 76.46 2ac7A 235 76.67 c.56.2.1 126543 2p6pA 384 77.39 1b8oA 284 77.76 c.56.2.1 33762 1zpdA 568 78.42 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1gkpA 458 78.45 b.92.1.3,c.1.9.6 70231,70232 1y5mA 276 78.97 c.2.1.2 122645 1a7jA 290 79.09 c.37.1.6 31952 1gvfA 286 79.29 c.1.10.2 70599 3cjpA 272 79.32 2jahA 247 79.45 1uayA 242 79.72 c.2.1.2 88390 2cdcA 366 79.92 1cjcA 460 80.02 c.3.1.1,c.4.1.1 30319,30604 2hsjA 214 81.60 2o23A 265 81.96 c.2.1.2 138884 2nxwA 565 82.15 1y56B 382 82.21 2gruA 368 82.43 2r6jA 318 83.22 2rjoA 332 83.76 1uozA 315 84.00 c.6.1.1 113354 1g3qA 237 84.75 c.37.1.10 60237 2yvuA 186 85.27 1o5kA 306 85.98 c.1.10.1 92504 1qwjA 229 86.28 c.68.1.13 96478 2a4vA 159 87.07 c.47.1.10 126163 2a0mA 316 87.27 c.42.1.1 125960 3ca8A 266 87.92 2ph3A 245 88.51 2pgnA 589 88.95 2pptA 155 89.12