# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 7.83e-08 c.69.1.25 77772 2d5lA 706 2.17e-07 2z3zA 706 2.28e-07 2i3dA 249 2.44e-07 1c4xA 285 2.73e-07 c.69.1.10 34684 2og1A 286 2.77e-07 2o7rA 338 3.07e-07 1uk8A 282 3.10e-07 c.69.1.10 107907 2hdwA 367 3.25e-07 2puhA 286 3.32e-07 2pujA 286 3.44e-07 2rhwA 283 3.52e-07 1q0rA 298 3.73e-07 c.69.1.28 95508 2r11A 306 3.79e-07 3bdiA 207 3.90e-07 1bn7A 294 4.27e-07 c.69.1.8 34677 1a8sA 273 4.56e-07 c.69.1.12 34710 1zoiA 276 4.81e-07 2hu5A 582 5.33e-07 b.69.7.2,c.69.1.33 136763,136764 1vlqA 337 5.66e-07 c.69.1.25 108848 1j1iA 296 5.82e-07 c.69.1.10 83977 1din 236 6.91e-07 1a8qA 274 7.20e-07 c.69.1.12 34702 1u2eA 289 7.61e-07 1hkhA 279 7.98e-07 c.69.1.12 90628 1hlgA 371 8.52e-07 c.69.1.6 34656 2ocgA 254 1.00e-06 2b61A 377 1.01e-06 1zi8A 236 1.05e-06 3bwxA 285 1.08e-06 1zd3A 555 1.32e-06 c.108.1.2,c.69.1.11 124930,124931 1va4A 279 1.35e-06 c.69.1.12 108458 1ehyA 294 1.51e-06 c.69.1.11 34693 2o2gA 223 1.54e-06 3b5eA 223 1.62e-06 1brt 277 1.71e-06 1k8qA 377 1.95e-06 c.69.1.6 72177 1auoA 218 2.04e-06 c.69.1.14 34716 1brtA 277 2.10e-06 c.69.1.12 34699 2jbwA 386 2.19e-06 1mj5A 302 2.21e-06 c.69.1.8 91285 2cjpA 328 2.22e-06 1jkmA 358 2.31e-06 c.69.1.2 34633 2o2iA 300 2.33e-06 2qvbA 297 2.69e-06 2e3jA 356 2.69e-06 1b6g 310 3.21e-06 1azwA 313 3.25e-06 c.69.1.7 34658 1vkhA 273 3.25e-06 c.69.1.32 108662 1fj2A 232 3.37e-06 c.69.1.14 34720 2fukA 220 3.61e-06 1wm1A 317 3.98e-06 c.69.1.7 109405 1b6gA 310 3.99e-06 c.69.1.8 34661 2uz0A 263 4.00e-06 1f0nA 285 4.07e-06 c.69.1.3 34636 1orvA 728 4.25e-06 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 4.35e-06 c.69.1.2 78306 2yysA 286 4.40e-06 2psdA 318 4.57e-06 1womA 271 4.66e-06 1jfrA 262 4.89e-06 c.69.1.16 34724 1jjfA 268 4.91e-06 c.69.1.2 66765 1u4nA 310 5.03e-06 c.69.1.2 113021 2pl5A 366 5.25e-06 1jjiA 311 7.33e-06 c.69.1.2 66766 1m33A 258 7.38e-06 c.69.1.26 78514 1imjA 210 7.74e-06 c.69.1.23 71246 1mtzA 293 7.78e-06 c.69.1.7 79467 2hm7A 310 8.04e-06 1mpxA 615 8.22e-06 b.18.1.13,c.69.1.21 85041,85042 1y37A 304 8.83e-06 1qo7A 394 9.85e-06 c.69.1.11 34697 1xqwA 293 1.00e-05 2qruA 274 1.01e-05 3bf7A 255 1.02e-05 1xklA 273 1.17e-05 c.69.1.20 115410 1r1dA 247 1.42e-05 c.69.1.29 96813 2qmqA 286 1.44e-05 3bxpA 277 1.45e-05 1r88A 280 1.94e-05 c.69.1.3 97219 1ufoA 238 2.00e-05 c.69.1.27 99344 2qm0A 275 2.80e-05 2gzsA 278 2.92e-05 2r8bA 251 3.61e-05 2veoA 441 3.63e-05 3c5vA 316 3.96e-05 1tqhA 247 4.63e-05 c.69.1.29 107225 2bklA 695 5.33e-05 2rauA 354 5.70e-05 1qj4A 257 5.98e-05 c.69.1.20 34796 1dqzA 280 6.41e-05 c.69.1.3 34638 1ju3A 583 6.43e-05 b.18.1.13,c.69.1.21 67300,67301 1r3dA 264 7.05e-05 c.69.1.35 111680 2fx5A 258 7.91e-05 2b20A 403 9.43e-05 b.1.18.20,c.69.1.2 127685,127686 1pv1A 299 9.55e-05 c.69.1.34 111639 1o6gA 710 9.74e-05 b.69.7.1,c.69.1.4 81087,81088 1yr2A 741 9.94e-05 1h2wA 710 0.000111 b.69.7.1,c.69.1.4 76596,76597 2pblA 262 0.000139 1wb4A 297 0.000141 c.69.1.2 120827 3c8dA 403 0.000143 1qlwA 328 0.000157 c.69.1.15 34722 1ea5A 537 0.000170 c.69.1.1 34592 2q0xA 335 0.000184 1pjaA 302 0.000184 c.69.1.13 94758 3bixA 574 0.000307 2ogtA 498 0.000332 2bceA 585 0.000362 c.69.1.1 34625 1p0iA 529 0.000411 c.69.1.1 93867 1ispA 181 0.000460 c.69.1.18 76778 1thtA 305 0.000713 c.69.1.13 34711 2qjwA 176 0.000755 1qe3A 489 0.000859 c.69.1.1 34630 1tcaA 317 0.000897 c.69.1.17 34726 2bce 581 0.001127 1uxoA 192 0.001322 c.69.1.31 108121 1ycdA 243 0.001393 1ivyA 452 0.001433 c.69.1.5 34654 2hfkA 319 0.001601 2h7cA 542 0.001732 c.69.1.1 136207 2qs9A 194 0.001792 1tca 317 0.001869 3bdvA 191 0.001895 1ukcA 522 0.002058 c.69.1.17 107911 1ei9A 279 0.002439 c.69.1.13 34713 1ys1X 320 0.002905 1mnaA 298 0.004649 c.69.1.22 79322 1cvlA 319 0.004854 c.69.1.18 34786 1jmkC 230 0.005182 c.69.1.22 71747 1cvl 319 0.005331 1llfA 534 0.005921 c.69.1.17 78094 1thgA 544 0.007406 c.69.1.17 34763 1bu8A 452 0.007478 b.12.1.2,c.69.1.19 23647,34795 1thg 544 0.00996 2cb9A 244 0.01223 1hplA 449 0.01255 b.12.1.2,c.69.1.19 23639,34787 1ac5A 483 0.01261 c.69.1.5 34653 2px6A 316 0.01360 1lnsA 763 0.07227 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2czqA 205 0.6599 1cex 214 0.6832 1cexA 214 1.061 c.69.1.30 31285 1g66A 207 1.190 c.69.1.30 31329 1whsA 255 1.949 c.69.1.5 34649 2dsnA 387 2.319 2z5gA 387 2.615 3tglA 269 2.892 c.69.1.17 34733 1tib 269 5.542 1ku0A 388 7.324 c.69.1.18 72994 2oryA 346 9.047 3beoA 375 9.746 1tibA 269 12.02 c.69.1.17 34738 2c5aA 379 14.54 c.2.1.2 129894 2qjjA 402 19.04 1kqfA 1015 20.00 b.52.2.2,c.81.1.1 72871,72872 2odfA 257 20.87 2pzmA 330 21.64 1fjhA 257 21.90 c.2.1.2 29870 2b69A 343 23.49 c.2.1.2 127974 2d80A 318 28.70 2o55A 258 29.60 1b26A 416 29.63 c.2.1.7,c.58.1.1 30232,33880 1c1dA 355 30.06 c.2.1.7,c.58.1.1 30270,33918 1uwcA 261 30.75 c.69.1.17 100101 1n7hA 381 31.43 c.2.1.2 80250 2j3hA 345 32.55 1rrvA 416 32.98 c.87.1.5 105083 1b3bA 415 33.53 c.2.1.7,c.58.1.1 30244,33892 3ch0A 272 36.37 3crrA 323 36.68 2pk3A 321 37.01 3buvA 326 37.31 1ja9A 274 37.39 c.2.1.2 62817 1xgkA 352 38.13 c.2.1.2 115286 2gmwA 211 38.95 2p5yA 311 39.64 2pnfA 248 39.86 1rkxA 357 40.02 c.2.1.2 97631 1hwxA 501 40.73 c.2.1.7,c.58.1.1 30250,33898 1kfcA 268 40.93 c.1.2.4 77371 2dm6A 333 41.47 b.35.1.2,c.2.1.1 131567,131568 2qubA 615 41.75 2ekpA 239 42.79 2dvtA 327 42.93 c.1.9.15 131793 2bdqA 224 43.96 2p91A 285 44.01 2ef5A 290 45.20 1x1eA 239 45.39 1h0hA 977 45.59 b.52.2.2,c.81.1.1 76435,76436 2e3zA 465 45.72 2z8xA 617 47.30 2gcuA 245 47.58 1gtmA 419 48.15 c.2.1.7,c.58.1.1 30223,33871 2dknA 255 49.22 2o14A 375 49.90 2pi1A 334 49.94 2d81A 318 50.64 2j4jA 226 50.75 1b43A 340 51.34 a.60.7.1,c.120.1.2 18092,33362 1f0kA 364 52.80 c.87.1.2 35465 2az4A 429 52.89 d.157.1.10 127597 1gegA 256 53.36 c.2.1.2 29888 2qgnA 322 53.89 3c4vA 426 54.84 1zuaX 317 55.40 2iv2X 715 58.07 b.52.2.2,c.81.1.1 137714,137715 1eny 268 58.35 2pceA 386 58.69 1wvgA 359 60.77 c.2.1.2 121339 2iyfA 430 60.96 1lqtA 456 61.15 c.3.1.1,c.4.1.1 74198,74199 1wraA 308 61.52 d.157.1.8 121190 1v4vA 376 61.76 c.87.1.3 100313 1us0A 316 62.16 c.1.7.1 99850 2yvdA 431 63.20 2jfnA 285 63.35 2bgsA 344 63.80 1ek6A 348 64.69 c.2.1.2 29800 1zemA 262 65.05 c.2.1.2 124984 1uyrA 737 65.31 c.14.1.4,c.14.1.4 100188,100189 1geeA 261 65.44 c.2.1.2 90509 2e7zA 727 67.58 1bgvA 449 67.68 c.2.1.7,c.58.1.1 30217,33865 1zccA 248 67.71 c.1.18.3 124903 2z1mA 345 67.88 2r91A 286 68.15 1rtqA 299 68.20 c.56.5.4 97819 2h7mA 269 68.59 c.2.1.2 136219 1dxyA 333 68.93 c.2.1.4,c.23.12.1 30094,31354 1ve1A 304 69.09 c.79.1.1 120007 1j96A 323 69.22 c.1.7.1 71616 1zuwA 272 69.62 2gv8A 447 70.40 c.3.1.5,c.3.1.5 135759,135760 1qq9A 284 70.50 c.56.5.4 33841 1to6A 371 70.74 c.141.1.1 107170 1vljA 407 71.52 e.22.1.2 108832 1d7oA 297 72.20 c.2.1.2 29907 1frb 315 72.49 2pqmA 343 72.57 2q7sA 290 76.28 2p4hX 322 76.72 1a76A 326 76.99 a.60.7.1,c.120.1.2 18091,33361 1aj2 282 77.72 1w5fA 353 78.21 c.32.1.1,d.79.2.1 114247,114248 2f48A 555 78.58 c.89.1.1 132915 1vmeA 410 79.03 c.23.5.1,d.157.1.3 108893,108894 2dwuA 276 79.80 2dkfA 431 80.09 1mi3A 322 80.34 c.1.7.1 91274 1g0oA 283 81.07 c.2.1.2 60181 2nx2A 181 81.25 2oo6A 409 81.28 1h5qA 265 81.69 c.2.1.2 60643 1k2wA 256 82.82 c.2.1.2 90927 1t2aA 375 83.07 c.2.1.2 99078 2dstA 131 83.09 1e7wA 291 83.13 c.2.1.2 59373 2qh8A 302 84.73 1vj1A 363 84.94 b.35.1.2,c.2.1.1 100794,100795 1w3iA 293 85.39 c.1.10.1 109152 1eq2A 310 85.68 c.2.1.2 29814 2r00A 336 85.88 1xg4A 295 86.99 1vjtA 483 88.70 c.2.1.5,d.162.1.2 100833,100834 2pozA 392 89.84