# List of top-scoring protein chains for T0413.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ecfA 741 2.02e-17 1orvA 728 1.67e-15 b.70.3.1,c.69.1.24 87354,87355 2gbcA 730 2.58e-15 2d5lA 706 5.15e-15 1z68A 719 5.20e-15 2z3zA 706 6.18e-15 2rguA 734 8.71e-15 1wcyA 740 8.73e-15 b.70.3.1,c.69.1.24 120903,120904 3c45A 728 9.49e-15 2ripA 729 9.50e-15 1pfqA 731 9.51e-15 b.70.3.1,c.69.1.24 88061,88062 1tk3A 728 9.51e-15 b.70.3.1,c.69.1.24 107069,107070 2bgrA 738 9.57e-15 b.70.3.1,c.69.1.24 128496,128497 2oncA 731 9.59e-15 2qt9A 766 9.83e-15 1r9mA 733 9.83e-15 b.70.3.1,c.69.1.24 104870,104871 2g63A 726 9.98e-15 b.70.3.1,c.69.1.24 134686,134687 1r9nA 739 1.00e-14 b.70.3.1,c.69.1.24 118745,118746 2dcmA 706 1.29e-14 1u8eA 728 1.74e-14 b.70.3.1,c.69.1.24 107733,107734 2qzpA 562 1.69e-13 2hu5A 582 2.22e-13 b.69.7.2,c.69.1.33 136763,136764 2hu8A 582 5.66e-13 b.69.7.2,c.69.1.33 136772,136773 1pv1A 299 2.39e-12 c.69.1.34 111639 1xfdA 723 7.26e-10 b.70.3.1,c.69.1.24 115251,115252 1fj2A 232 3.99e-09 c.69.1.14 34720 1auoA 218 4.91e-08 c.69.1.14 34716 1evqA 310 6.02e-08 c.69.1.2 34635 1jjfA 268 6.18e-08 c.69.1.2 66765 1u4nA 310 6.35e-08 c.69.1.2 113021 2hm7A 310 9.08e-08 1yr2A 741 1.21e-07 1jt2A 268 2.16e-07 c.69.1.2 71858 2c7bA 311 2.68e-07 1a8sA 273 2.82e-07 c.69.1.12 34710 2bklA 695 2.82e-07 2uz0A 263 3.99e-07 1lzlA 323 4.05e-07 c.69.1.2 78306 1va4A 279 4.18e-07 c.69.1.12 108458 1jjiA 311 4.84e-07 c.69.1.2 66766 1l7aA 318 1.38e-06 c.69.1.25 77772 2o7rA 338 1.72e-06 1zoiA 276 1.88e-06 1vlqA 337 2.12e-06 c.69.1.25 108848 1k4yA 534 2.16e-06 c.69.1.1 72069 1odsA 318 2.26e-06 c.69.1.25 86877 1odtC 318 3.37e-06 c.69.1.25 86885 1qe3A 489 3.40e-06 c.69.1.1 34630 1c7iA 489 3.44e-06 c.69.1.1 34632 2jbwA 386 4.04e-06 1c7jA 489 4.31e-06 c.69.1.1 34631 3bdiA 207 5.20e-06 1vz2A 710 7.78e-06 b.69.7.1,c.69.1.4 108945,108946 1xrlA 293 8.31e-06 1xrrA 293 8.58e-06 1mtzA 293 8.68e-06 c.69.1.7 79467 2r8bA 251 8.84e-06 1xroA 293 8.89e-06 1h2wA 710 9.97e-06 b.69.7.1,c.69.1.4 76596,76597 1e5tA 710 1.10e-05 b.69.7.1,c.69.1.4 27676,34644 2og1A 286 1.10e-05 2i3dA 249 1.15e-05 3bjrA 283 1.41e-05 1xqvA 293 1.42e-05 1vz3A 710 1.43e-05 b.69.7.1,c.69.1.4 108947,108948 1a88A 275 1.74e-05 c.69.1.12 34707 1h2xA 710 1.89e-05 b.69.7.1,c.69.1.4 76598,76599 1thgA 544 2.09e-05 c.69.1.17 34763 2hdwA 367 2.46e-05 2ockA 254 2.58e-05 2zjfA 362 2.67e-05 1xqwA 293 2.70e-05 2ogsA 498 2.74e-05 2ogtA 498 2.75e-05 2e3jA 356 2.82e-05 1wm1A 317 2.90e-05 c.69.1.7 109405 1o6gA 710 2.98e-05 b.69.7.1,c.69.1.4 81087,81088 1jkmA 361 3.09e-05 c.69.1.2 34633 3bwxA 285 3.11e-05 1f6wA 533 3.37e-05 c.69.1.1 34629 2puhA 286 3.42e-05 1jmyA 522 3.45e-05 c.69.1.1 63182 2ocgA 254 3.59e-05 2rhwA 283 3.61e-05 1c4xA 285 3.91e-05 c.69.1.10 34684 2cjpA 328 3.91e-05 1broA 277 4.14e-05 c.69.1.12 34700 1e8nA 710 4.18e-05 b.69.7.1,c.69.1.4 27675,34643 2h1iA 226 4.53e-05 1azwA 313 4.69e-05 c.69.1.7 34658 2hrrA 532 4.70e-05 c.69.1.1 136696 2h7cA 542 4.82e-05 c.69.1.1 136207 1aqlA 532 4.85e-05 c.69.1.1 34627 1aknA 579 4.86e-05 c.69.1.1 34626 1mx1A 548 4.86e-05 c.69.1.1 85165 2bceA 579 5.10e-05 c.69.1.1 34625 1ufoA 238 5.55e-05 c.69.1.27 99344 1a8uA 277 5.75e-05 c.69.1.12 34703 1hkhA 279 6.42e-05 c.69.1.12 90628 3bxpA 277 6.49e-05 1o6fA 710 7.21e-05 b.69.7.1,c.69.1.4 81085,81086 1zd3A 555 7.36e-05 c.108.1.2,c.69.1.11 124930,124931 1brtA 277 9.10e-05 c.69.1.12 34699 1u2eA 289 9.37e-05 2fj0A 551 9.68e-05 2oclA 254 0.000112 2o2gA 223 0.000119 2pujA 286 0.000121 3bl8A 580 0.000125 1tqhA 247 0.000138 c.69.1.29 107225 2fukA 220 0.000138 1a8qA 274 0.000147 c.69.1.12 34702 2d0dA 282 0.000221 1zixA 236 0.000231 1q0rA 298 0.000255 c.69.1.28 95508 1j1iA 296 0.000276 c.69.1.10 83977 2vh8A 562 0.000306 1r1dA 247 0.000310 c.69.1.29 96813 3be8A 588 0.000335 3b3qA 577 0.000354 1gkkA 297 0.000374 c.69.1.2 65248 1ycdA 243 0.000452 1crlA 534 0.000471 c.69.1.17 34765 1lppA 549 0.000475 c.69.1.17 34764 3bixA 574 0.000477 1cr6A 554 0.000497 c.69.1.11,c.108.1.2 34687,43337 1wb4A 297 0.000503 c.69.1.2 120827 1gz7A 534 0.000546 c.69.1.17 83401 1zicA 236 0.000610 1zi6A 236 0.000618 1c2oA 539 0.000631 c.69.1.1 34610 1zi9A 236 0.000648 1zi8A 236 0.000673 1c2bA 540 0.000692 c.69.1.1 34614 1b41A 539 0.000697 c.69.1.1 34621 1n5mA 541 0.000774 c.69.1.1 80031 2ha2A 543 0.000775 c.69.1.1 136274 2c0pA 548 0.000775 c.69.1.1 129600 1ku6A 549 0.000776 c.69.1.1 91037 1maaA 547 0.000779 c.69.1.1 34615 1jfrA 262 0.000787 c.69.1.16 34724 1q84A 580 0.000796 c.69.1.1 96156 1uk8A 282 0.000833 c.69.1.10 107907 1eeaA 534 0.000898 c.69.1.1 34609 2cekA 535 0.000899 c.69.1.1 130347 1gqrA 532 0.000899 c.69.1.1 70374 2dfpA 534 0.000900 c.69.1.1 34597 1ut6A 537 0.000900 c.69.1.1 119698 1ea5A 537 0.000902 c.69.1.1 34592 1w6rA 543 0.000904 c.69.1.1 114283 1f8uA 583 0.000920 c.69.1.1 34620 1hlgA 371 0.000995 c.69.1.6 34656 1va5A 303 0.001078 c.69.1.3 108464 1dinA 236 0.001085 c.69.1.9 34682 1dqyA 283 0.001284 c.69.1.3 34640 1ggvA 232 0.001299 c.69.1.9 34683 1ziyA 236 0.001359 1zj4A 236 0.001424 1zj5A 236 0.001485 2jf0A 548 0.001501 1dqzA 280 0.001522 c.69.1.3 34638 1cleA 534 0.001619 c.69.1.17 34771 1llfA 534 0.001669 c.69.1.17 78094 1mpxA 615 0.001971 b.18.1.13,c.69.1.21 85041,85042 2c58A 537 0.001976 c.69.1.1 129891 2yysA 286 0.002296 1k8qA 377 0.002469 c.69.1.6 72177 2ha5A 543 0.002472 2rauA 354 0.002654 2qm0A 275 0.002667 3b5eA 223 0.002749 1m33A 258 0.002835 c.69.1.26 78514 2vf2A 311 0.002938 2pblA 262 0.003193 2r11A 306 0.003443 2fx5A 258 0.003454 2pm8A 574 0.003635 1p0iA 529 0.004120 c.69.1.1 93867 2j4cA 529 0.004150 3c5vA 316 0.004563 1ivyA 452 0.005550 c.69.1.5 34654 1ukcA 522 0.007580 c.69.1.17 107911 1f0nA 285 0.007715 c.69.1.3 34636 2d80A 318 0.008590 1ryyA 652 0.008802 b.18.1.13,c.69.1.21 118821,118822 2gzsA 278 0.008912 2b9vA 652 0.009217 b.18.1.13,c.69.1.21 128199,128200 2pl5A 366 0.01085 1imjA 210 0.01238 c.69.1.23 71246 1sfrA 304 0.01339 c.69.1.3 105500 3c5wP 310 0.01509 1ehyA 294 0.01599 c.69.1.11 34693 1r88A 280 0.01864 c.69.1.3 97219 1ju3A 583 0.02142 b.18.1.13,c.69.1.21 67300,67301 3bf7A 255 0.02735 1dx4A 585 0.02851 c.69.1.1 34622 1l7rA 574 0.02894 b.18.1.13,c.69.1.21 77793,77794 2qruA 274 0.03070 2d81A 318 0.03228 1nx9A 652 0.03457 b.18.1.13,c.69.1.21 92285,92286 1lnsA 763 0.03578 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1womA 271 0.03657 3bf8A 255 0.03783 3bdvA 191 0.04777 1cpyA 421 0.05645 c.69.1.5 34651 1bn7A 294 0.06233 c.69.1.8 34677 2b61A 377 0.06374 1cqwA 295 0.06629 c.69.1.8 34679 1wpxA 421 0.07030 c.69.1.5 121156 2veoA 441 0.07571 1vkhA 273 0.07817 c.69.1.32 108662 1l7qA 574 0.08370 b.18.1.13,c.69.1.21 77791,77792 1r3dA 264 0.09723 c.69.1.35 111680 3c8dA 403 0.1319 2qmqA 286 0.1845 1y7iA 268 0.2282 c.69.1.20 116546 1xklA 273 0.2405 c.69.1.20 115410 1y37A 304 0.2714 2qs9A 194 0.3079 1ys1X 320 0.3846 4lipD 320 0.3912 c.69.1.18 34783 2yxpX 310 0.3934 1bezA 310 0.3935 c.69.1.8 34666 1b6gA 310 0.3953 c.69.1.8 34661 1hdeA 310 0.4249 c.69.1.8 34675 1ac5A 483 0.5160 c.69.1.5 34653 1gxsB 158 0.7537 1whsA 255 0.8560 c.69.1.5 34649 1whtA 256 0.8702 c.69.1.5 34646 1bcsA 263 0.9255 c.69.1.5 34647 2pplA 485 0.9718 1gplA 432 1.022 b.12.1.2,c.69.1.19 23645,34793 2psjA 319 1.062 2psdA 318 1.063 1qgeD 222 1.081 c.69.1.18 34773 3sc2A 259 1.099 c.69.1.5 34648 2psfA 310 1.166 2pshA 319 1.382 1cvlA 319 1.523 c.69.1.18 34786 1tahA 318 1.554 c.69.1.18 34775 1w52X 452 1.701 1lpbB 449 2.575 b.12.1.2,c.69.1.19 23643,34791 1rp1A 450 3.200 b.12.1.2,c.69.1.19 23646,34794 5tglA 269 3.578 c.69.1.17 34736 4tglA 269 3.588 c.69.1.17 34735 1tglA 269 3.619 c.69.1.17 34734 2oxeA 466 4.905 1bcsB 160 4.935 3sc2B 152 5.017 1whsB 153 5.025 1tcaA 317 5.128 c.69.1.17 34726 3tglA 269 5.563 c.69.1.17 34733 2oryA 346 5.782 2qjwA 176 6.116 1hplA 449 7.519 b.12.1.2,c.69.1.19 23639,34787 2pvsA 452 7.577 1o89A 345 8.723 b.35.1.2,c.2.1.1 92644,92645 1ethA 448 9.069 b.12.1.2,c.69.1.19 23641,34789 1sckA 257 9.424 c.69.1.20 105421 1yb6A 256 9.502 c.69.1.20 122870 1qj4A 257 9.573 c.69.1.20 34796 1gxsA 270 10.07 c.69.1.5 76375 1bu8A 452 10.19 b.12.1.2,c.69.1.19 23647,34795 1qlwA 328 11.38 c.69.1.15 34722 1lgyA 269 13.72 c.69.1.17 34758 1uswA 260 15.19 c.69.1.17 99895 1ku0A 388 18.11 c.69.1.18 72994 2ze0A 555 18.36 2z5gA 387 20.27 1uwcA 261 20.78 c.69.1.17 100101 2hl6A 260 20.84 c.69.1.17 136561 1ji3A 388 21.82 c.69.1.18 77115 2bhuA 602 24.59 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1t2nA 181 26.15 c.69.1.18 112226 2ixsA 323 26.37 2yr5A 721 26.51 1t4mA 181 27.72 c.69.1.18 112243 1ispA 181 27.95 c.69.1.18 76778 2qxuA 179 28.34 2dsnA 387 28.45 1mo2A 294 28.81 c.69.1.22 79331 1kezA 300 29.20 c.69.1.22 68546 1mnaA 298 31.06 c.69.1.22 79322 1odfA 290 32.24 c.37.1.6 92782 2dr3A 247 33.53 1qo7A 394 34.83 c.69.1.11 34697 2h7xA 319 34.86 c.69.1.22 136227 2q0xA 335 35.82 2p2wA 367 38.92 2qubA 615 41.68 2ovlA 371 42.59 1thtA 305 43.94 c.69.1.13 34711 1tw3A 360 48.90 a.4.5.29,c.66.1.12 107373,107374 2yvuA 186 55.11 1dwqA 262 57.27 c.69.1.20 34808 1iayA 428 62.89 c.67.1.4 62130 1tibA 269 68.91 c.69.1.17 34738 1ei9A 279 69.13 c.69.1.13 34713 1dxlA 470 70.43 c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 1lwuB 323 71.22 d.171.1.1,h.1.8.1 74310,74311 2a1xA 308 71.70 b.82.2.9 126022 1xa3A 437 71.88 c.123.1.1 115025 1zdyA 307 75.49 d.313.1.1 124961 2bjhA 260 75.95 2et6A 604 76.66 2j2fA 363 76.95 2c2nA 339 78.14 2fn9A 290 80.38 1xffA 240 82.14 d.153.1.1 109580 1u7nA 336 82.80 c.77.1.4 107726 1euzA 419 85.58 c.2.1.7,c.58.1.1 59513,59514 1tiaA 279 85.62 c.69.1.17 34737 1wu6A 396 87.77 a.102.1.2 121274 2v9dA 343 87.79 2dfaA 250 88.86 c.6.2.5 131469