# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 8.87e-23 2z3zA 706 2.07e-22 2hu5A 582 2.63e-22 b.69.7.2,c.69.1.33 136763,136764 1xfdA 723 1.24e-20 b.70.3.1,c.69.1.24 115251,115252 1o6gA 710 2.06e-20 b.69.7.1,c.69.1.4 81087,81088 1orvA 728 2.09e-20 b.70.3.1,c.69.1.24 87354,87355 1h2wA 710 2.61e-20 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 3.71e-20 b.69.7.1,c.69.1.4 27673,34641 1yr2A 741 5.37e-20 2qm0A 275 5.46e-20 2bklA 695 1.12e-19 2uz0A 263 3.58e-19 3c8dA 403 1.31e-18 1wb4A 297 1.64e-18 c.69.1.2 120827 1l7aA 318 3.09e-18 c.69.1.25 77772 2jbwA 386 5.73e-18 1vlqA 337 6.10e-18 c.69.1.25 108848 2b20A 403 6.18e-18 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 6.77e-18 2i3dA 249 7.72e-18 1f0nA 285 9.90e-18 c.69.1.3 34636 1pv1A 299 1.04e-17 c.69.1.34 111639 3b5eA 223 1.22e-17 2r8bA 251 1.45e-17 1jjfA 268 2.98e-17 c.69.1.2 66765 2o2gA 223 7.27e-17 1fj2A 232 1.18e-16 c.69.1.14 34720 1ycdA 243 1.26e-16 1zi8A 236 1.36e-16 1jfrA 262 1.61e-16 c.69.1.16 34724 3bxpA 277 1.65e-16 1din 236 1.68e-16 2fx5A 258 2.27e-16 1lzlA 323 2.58e-16 c.69.1.2 78306 2fukA 220 5.56e-16 1jjiA 311 9.07e-16 c.69.1.2 66766 1ufoA 238 1.91e-15 c.69.1.27 99344 1r88A 280 2.08e-15 c.69.1.3 97219 1dqzA 280 2.70e-15 c.69.1.3 34638 1u4nA 310 2.86e-15 c.69.1.2 113021 1auoA 218 4.12e-15 c.69.1.14 34716 1qe3A 489 4.90e-15 c.69.1.1 34630 1ea5A 537 5.88e-15 c.69.1.1 34592 1mpxA 615 6.46e-15 b.18.1.13,c.69.1.21 85041,85042 1thg 544 9.52e-15 1p0iA 529 9.81e-15 c.69.1.1 93867 1vkhA 273 1.48e-14 c.69.1.32 108662 1cleA 534 1.64e-14 c.69.1.17 34771 2hdwA 367 1.69e-14 1llfA 534 4.02e-14 c.69.1.17 78094 1ukcA 522 4.81e-14 c.69.1.17 107911 2pblA 262 1.39e-13 2bce 581 6.56e-13 1ju3A 583 7.23e-13 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 1.10e-12 1wm1A 317 1.69e-12 c.69.1.7 109405 1imjA 210 2.75e-12 c.69.1.23 71246 1k8qA 377 6.32e-12 c.69.1.6 72177 1q0rA 298 6.69e-12 c.69.1.28 95508 1hlgA 371 6.76e-12 c.69.1.6 34656 1qtrA 317 6.93e-12 c.69.1.7 34660 1jkmA 358 7.26e-12 c.69.1.2 34633 1b6g 310 9.49e-12 1u2eA 289 9.80e-12 1j1iA 296 9.90e-12 c.69.1.10 83977 1ede 310 1.43e-11 2o7rA 338 2.49e-11 1c4xA 285 2.57e-11 c.69.1.10 34684 1azwA 313 2.78e-11 c.69.1.7 34658 1va4A 279 3.42e-11 c.69.1.12 108458 1mtzA 293 4.09e-11 c.69.1.7 79467 1uk8A 282 5.24e-11 c.69.1.10 107907 1bn7A 294 5.62e-11 c.69.1.8 34677 1ehyA 294 5.71e-11 c.69.1.11 34693 1a88A 275 6.45e-11 c.69.1.12 34707 1brt 277 8.64e-11 1yasA 257 1.12e-10 c.69.1.20 34801 1broA 277 1.19e-10 c.69.1.12 34700 2veoA 441 1.37e-10 1hkhA 279 1.73e-10 c.69.1.12 90628 1tqhA 247 1.74e-10 c.69.1.29 107225 1womA 271 1.86e-10 1qj4A 257 1.94e-10 c.69.1.20 34796 1zd3A 555 2.07e-10 c.108.1.2,c.69.1.11 124930,124931 1lnsA 763 2.09e-10 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2qjwA 176 2.33e-10 1xqwA 293 2.52e-10 1zoiA 276 2.60e-10 3bdiA 207 2.98e-10 2cjpA 328 3.89e-10 2h7cA 542 4.03e-10 c.69.1.1 136207 1r1dA 247 4.05e-10 c.69.1.29 96813 1m33A 258 4.28e-10 c.69.1.26 78514 1xklA 273 4.36e-10 c.69.1.20 115410 2ocgA 254 5.05e-10 2rhwA 283 5.26e-10 2r11A 306 5.57e-10 2ogtA 498 6.32e-10 3c5vA 316 6.73e-10 1cv2A 296 8.58e-10 c.69.1.8 34680 2puhA 286 8.88e-10 1mj5A 302 9.21e-10 c.69.1.8 91285 2og1A 286 9.81e-10 1tca 317 1.06e-09 2e3jA 356 1.11e-09 2pujA 286 1.28e-09 1a8sA 273 1.28e-09 c.69.1.12 34710 1b6gA 310 1.34e-09 c.69.1.8 34661 1uxoA 192 1.45e-09 c.69.1.31 108121 1a8qA 274 1.55e-09 c.69.1.12 34702 3bwxA 285 1.68e-09 1ei9A 279 2.23e-09 c.69.1.13 34713 2qmqA 286 3.09e-09 2psdA 318 3.37e-09 1brtA 277 3.95e-09 c.69.1.12 34699 1mnaA 298 4.91e-09 c.69.1.22 79322 2yysA 286 5.88e-09 1qo7A 394 6.59e-09 c.69.1.11 34697 2b61A 377 6.70e-09 2qruA 274 7.18e-09 3bdvA 191 7.46e-09 1r3dA 264 8.66e-09 c.69.1.35 111680 3bf7A 255 8.90e-09 1pjaA 302 9.12e-09 c.69.1.13 94758 2qs9A 194 9.83e-09 1tcaA 317 1.22e-08 c.69.1.17 34726 1y37A 304 1.51e-08 2qvbA 297 1.66e-08 1gpl 432 1.98e-08 1qlwA 328 2.40e-08 c.69.1.15 34722 2o2iA 300 2.82e-08 2rauA 354 5.50e-08 3bixA 574 5.78e-08 2pl5A 366 6.47e-08 1bu8A 452 1.18e-07 b.12.1.2,c.69.1.19 23647,34795 1ys1X 320 1.28e-07 1thgA 544 1.79e-07 c.69.1.17 34763 2bceA 585 1.86e-07 c.69.1.1 34625 1jmkC 230 2.02e-07 c.69.1.22 71747 1cvl 319 2.45e-07 2hfkA 319 1.15e-06 1cvlA 319 1.36e-06 c.69.1.18 34786 1hplA 449 1.49e-06 b.12.1.2,c.69.1.19 23639,34787 2d80A 318 1.78e-06 2q0xA 335 2.26e-06 2cb9A 244 3.54e-06 1ivyA 452 6.84e-06 c.69.1.5 34654 2px6A 316 1.80e-05 2d81A 318 2.08e-05 1ac5A 483 3.36e-05 c.69.1.5 34653 1ac5 483 6.83e-05 1ispA 181 6.87e-05 c.69.1.18 76778 1i6wA 181 0.000274 c.69.1.18 61859 1tibA 269 0.001116 c.69.1.17 34738 1gt6A 269 0.002388 c.69.1.17 76342 1tib 269 0.005989 1uwcA 261 0.006372 c.69.1.17 100101 2z5gA 387 0.008295 3tglA 269 0.009489 c.69.1.17 34733 2bjhA 260 0.009550 1cexA 214 0.02491 c.69.1.30 31285 1thtA 305 0.02729 c.69.1.13 34711 1whtA 256 0.06607 c.69.1.5 34646 1cex 214 0.07525 2dsnA 387 0.07853 1whsA 255 0.1057 c.69.1.5 34649 2oryA 346 1.065 1ku0A 388 1.124 c.69.1.18 72994 1g0cA 364 1.555 c.1.8.3 60165 2csuA 457 1.883 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1g66A 207 4.280 c.69.1.30 31329 1whtB 153 4.963 1vflA 356 5.197 c.1.9.1 120041 1jz8A 1023 5.291 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1whsB 153 5.537 2bv9A 290 5.570 c.1.8.3 129242 2czqA 205 6.410 1db3A 372 6.624 c.2.1.2 29813 1itxA 419 7.337 c.1.8.5,d.26.3.1 71425,71426 1qh8A 478 8.602 c.92.2.3 35633 2bfgA 503 10.49 b.71.1.2,c.1.8.3 128423,128424 1qnrA 344 10.52 c.1.8.3 28834 1ryiA 382 10.64 c.3.1.2,d.16.1.3 118813,118814 1yt8A 539 12.54 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1bg4A 302 13.51 c.1.8.3 28806 2q4zA 312 13.84 1rh9A 373 14.53 c.1.8.3 118773 1edg 380 14.65 1t2aA 375 15.02 c.2.1.2 99078 2v9cA 215 15.09 1h1nA 305 15.48 c.1.8.3 70855 2iv2X 715 15.53 b.52.2.2,c.81.1.1 137714,137715 1owqA 361 15.93 c.1.8.5,d.26.3.1 104041,104042 1m22A 503 17.11 c.117.1.1 78464 1orrA 347 19.49 c.2.1.2 93460 1ve5A 311 19.82 c.79.1.1 120013 3ctpA 330 19.83 2ob3A 330 21.38 1ceo 343 21.96 1vf8A 377 22.87 c.1.8.5,d.26.3.1 120029,120030 1h0hA 977 23.47 b.52.2.2,c.81.1.1 76435,76436 1hkkA 364 23.63 c.1.8.5,d.26.3.1 90634,90635 1to6A 371 24.50 c.141.1.1 107170 2c2nA 339 25.70 1e9lA 377 25.76 c.1.8.5,d.26.3.1 59395,59396 2dri 271 26.28 1eqcA 394 26.33 c.1.8.3 28811 1vp8A 201 26.50 c.49.1.2 113947 1k6xA 352 28.97 c.2.1.2 68238 2q3bA 313 29.53 1fh9A 312 29.53 c.1.8.3 28913 2f6kA 307 30.27 c.1.9.15 133047 2pqmA 343 30.62 1w85A 368 31.49 c.36.1.11 114335 2hpvA 208 31.55 1yb0A 159 33.04 d.118.1.1 122865 1ng4A 390 33.45 c.3.1.2,d.16.1.3 85666,85667 2cksA 306 33.64 2nm0A 253 33.87 1xyzA 347 34.38 c.1.8.3 28804 2qtwB 546 34.47 1eiwA 111 34.60 c.23.3.1 31130 1z7yA 322 35.06 c.79.1.1 124679 1wb0A 445 36.40 c.1.8.5,d.26.3.1 120825,120826 1z15A 344 37.08 1qydA 313 37.58 c.2.1.2 96583 1edqA 540 37.75 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2jg2A 422 37.84 2e7zA 727 39.75 1vmkA 277 40.91 c.56.2.1 113680 1n7hA 381 41.13 c.2.1.2 80250 1ceoA 343 42.09 c.1.8.3 28808 1qe5A 266 42.29 c.56.2.1 33784 2osxA 481 42.45 2uz1A 563 43.00 2v3gA 283 43.38 2ct8A 497 43.59 3c8uA 208 44.01 1ll7A 392 44.69 c.1.8.5,d.26.3.1 78085,78086 2ax4A 198 44.75 1c93A 265 45.43 c.1.8.5 28998 1gudA 288 45.76 c.93.1.1 83326 1vbuA 328 45.88 c.1.8.3 119963 2liv 344 47.13 1hdoA 206 47.90 c.2.1.2 60965 2q09A 416 48.83 3clwA 507 49.44 1jndA 420 49.53 c.1.8.5,d.26.3.1 71757,71758 2h1yA 321 50.64 1o58A 303 50.90 c.79.1.1 92491 1eceA 358 52.34 c.1.8.3 28813 2q62A 247 52.79 1bdbA 277 52.94 c.2.1.2 29874 1usgA 346 53.05 c.93.1.1 99864 2a3nA 355 53.31 1rxyA 253 53.99 c.56.2.1 98065 1fcjA 322 54.20 c.79.1.1 35289 1x6vA 630 54.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1zowA 313 56.44 1ea9C 583 56.78 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1lhpA 312 57.07 c.72.1.5 77960 1fobA 334 57.67 c.1.8.3 83255 1g2oA 268 59.14 c.56.2.1 60228 2dx6A 159 61.05 2c0hA 353 61.37 c.1.8.3 129594 1w1iE 357 61.70 c.1.9.1 109051 1yq2A 1024 62.75 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1uhvA 500 63.09 b.71.1.2,c.1.8.3 99402,99403 1v6tA 255 63.85 c.6.2.5 113550 1e3jA 352 64.06 b.35.1.2,c.2.1.1 24765,29781 1hjxA 362 64.71 c.1.8.5,d.26.3.1 83512,83513 2fk8A 318 65.13 c.66.1.18 133648 2cuyA 305 65.49 2qmoA 220 65.64 1p5jA 372 66.50 c.79.1.1 104067 1jaeA 471 66.92 b.71.1.1,c.1.8.1 27773,28760 1tyfA 193 67.21 c.14.1.1 30885 1mjnA 179 67.29 c.62.1.1 79210 1z7wA 322 67.89 c.79.1.1 124674 1pswA 348 68.58 c.87.1.7 88287 1avaA 403 69.63 b.71.1.1,c.1.8.1 27797,28784 1edtA 271 70.33 c.1.8.5 28993 1h4pA 408 72.43 c.1.8.3 90617 1uf3A 228 72.46 d.159.1.6 99317 1es9A 232 72.54 c.23.10.3 31340 1v7cA 351 72.60 c.79.1.1 100446 2ez9A 603 73.08 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1gu7A 364 73.61 b.35.1.2,c.2.1.1 83321,83322 1tk9A 188 74.29 c.80.1.3 107082 2gt1A 326 74.40 1hjsA 332 74.73 c.1.8.3 83492 1fpzA 212 74.91 c.45.1.1 59976 2grjA 192 77.11 1j0aA 325 77.14 c.79.1.1 83871 1fjhA 257 79.18 c.2.1.2 29870 1l1eA 287 79.37 c.66.1.18 73454 2pfuA 99 80.11 1v0wA 506 80.14 d.136.1.2,d.136.1.2 108220,108221 1f0kA 364 80.41 c.87.1.2 35465 1vhwA 253 80.51 c.56.2.1 100706 1x92A 199 81.29 c.80.1.3 114976 2z2uA 311 84.62 1o8uA 257 84.99 c.14.1.3 81194 1ri5A 298 87.36 c.66.1.34 97502 1szoA 257 88.77 c.14.1.3 106164 1tjyA 316 89.34 c.93.1.1 107062