# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.97e-23 2z3zA 706 4.51e-23 2hu5A 582 4.68e-23 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.21e-21 b.70.3.1,c.69.1.24 87354,87355 1h2wA 710 6.26e-21 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 6.34e-21 b.69.7.1,c.69.1.4 81087,81088 1xfdA 723 8.37e-21 b.70.3.1,c.69.1.24 115251,115252 1qfmA 710 8.38e-21 b.69.7.1,c.69.1.4 27673,34641 1yr2A 741 1.06e-20 2qm0A 275 1.20e-20 2bklA 695 2.26e-20 2uz0A 263 1.15e-19 3c8dA 403 2.48e-19 1wb4A 297 5.14e-19 c.69.1.2 120827 2jbwA 386 5.96e-19 1l7aA 318 7.75e-19 c.69.1.25 77772 2gzsA 278 1.29e-18 1f0nA 285 1.78e-18 c.69.1.3 34636 2b20A 403 1.79e-18 b.1.18.20,c.69.1.2 127685,127686 1vlqA 337 2.33e-18 c.69.1.25 108848 2i3dA 249 2.43e-18 2r8bA 251 2.83e-18 3b5eA 223 3.11e-18 1pv1A 299 3.13e-18 c.69.1.34 111639 1jjfA 268 5.81e-18 c.69.1.2 66765 2o2gA 223 1.98e-17 1fj2A 232 2.14e-17 c.69.1.14 34720 1jfrA 262 3.77e-17 c.69.1.16 34724 1zi8A 236 4.63e-17 1ycdA 243 4.71e-17 3bxpA 277 5.03e-17 1din 236 6.20e-17 2fx5A 258 6.76e-17 1lzlA 323 7.16e-17 c.69.1.2 78306 2fukA 220 1.03e-16 1jjiA 311 3.03e-16 c.69.1.2 66766 1r88A 280 3.80e-16 c.69.1.3 97219 1dqzA 280 6.42e-16 c.69.1.3 34638 1auoA 218 9.89e-16 c.69.1.14 34716 1u4nA 310 1.13e-15 c.69.1.2 113021 1ufoA 238 1.17e-15 c.69.1.27 99344 1mpxA 615 1.23e-15 b.18.1.13,c.69.1.21 85041,85042 1qe3A 489 1.26e-15 c.69.1.1 34630 1thg 544 3.10e-15 1ea5A 537 3.49e-15 c.69.1.1 34592 1p0iA 529 5.25e-15 c.69.1.1 93867 2hdwA 367 5.65e-15 1cleA 534 6.82e-15 c.69.1.17 34771 1vkhA 273 7.49e-15 c.69.1.32 108662 1ukcA 522 1.73e-14 c.69.1.17 107911 1llfA 534 2.24e-14 c.69.1.17 78094 2pblA 262 6.03e-14 1ju3A 583 1.72e-13 b.18.1.13,c.69.1.21 67300,67301 2bce 581 5.95e-13 1wm1A 317 6.61e-13 c.69.1.7 109405 2hm7A 310 8.32e-13 1imjA 210 1.00e-12 c.69.1.23 71246 1k8qA 377 1.93e-12 c.69.1.6 72177 1q0rA 298 2.04e-12 c.69.1.28 95508 1b6g 310 2.35e-12 1j1iA 296 2.87e-12 c.69.1.10 83977 1hlgA 371 2.91e-12 c.69.1.6 34656 1ede 310 3.07e-12 1qtrA 317 3.30e-12 c.69.1.7 34660 1jkmA 358 4.30e-12 c.69.1.2 34633 1u2eA 289 7.40e-12 1azwA 313 9.73e-12 c.69.1.7 34658 1c4xA 285 1.21e-11 c.69.1.10 34684 2o7rA 338 1.29e-11 1va4A 279 1.36e-11 c.69.1.12 108458 1mtzA 293 1.38e-11 c.69.1.7 79467 1ehyA 294 1.50e-11 c.69.1.11 34693 1uk8A 282 2.14e-11 c.69.1.10 107907 1bn7A 294 2.32e-11 c.69.1.8 34677 1a88A 275 3.61e-11 c.69.1.12 34707 1yasA 257 3.79e-11 c.69.1.20 34801 1brt 277 4.97e-11 1lnsA 763 5.99e-11 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1broA 277 6.25e-11 c.69.1.12 34700 2veoA 441 6.32e-11 1qj4A 257 7.24e-11 c.69.1.20 34796 1tqhA 247 8.74e-11 c.69.1.29 107225 3bdiA 207 9.14e-11 1xqwA 293 1.11e-10 1womA 271 1.14e-10 2qjwA 176 1.14e-10 1xklA 273 1.18e-10 c.69.1.20 115410 2cjpA 328 1.25e-10 2ocgA 254 1.42e-10 1hkhA 279 1.43e-10 c.69.1.12 90628 1zd3A 555 1.52e-10 c.108.1.2,c.69.1.11 124930,124931 1m33A 258 1.74e-10 c.69.1.26 78514 2r11A 306 2.02e-10 1zoiA 276 2.50e-10 2ogtA 498 2.87e-10 1cv2A 296 2.89e-10 c.69.1.8 34680 1mj5A 302 2.99e-10 c.69.1.8 91285 3c5vA 316 3.18e-10 2h7cA 542 3.22e-10 c.69.1.1 136207 1r1dA 247 3.27e-10 c.69.1.29 96813 1tca 317 3.35e-10 1b6gA 310 4.16e-10 c.69.1.8 34661 2rhwA 283 4.25e-10 2og1A 286 5.41e-10 3bwxA 285 5.72e-10 2e3jA 356 5.90e-10 2puhA 286 6.05e-10 1uxoA 192 6.83e-10 c.69.1.31 108121 1a8sA 273 7.68e-10 c.69.1.12 34710 1a8qA 274 7.96e-10 c.69.1.12 34702 2pujA 286 8.56e-10 2b61A 377 1.43e-09 2qmqA 286 1.49e-09 2yysA 286 1.70e-09 2psdA 318 1.77e-09 1ei9A 279 1.81e-09 c.69.1.13 34713 2qs9A 194 2.12e-09 1brtA 277 2.15e-09 c.69.1.12 34699 1mnaA 298 3.18e-09 c.69.1.22 79322 1qo7A 394 3.68e-09 c.69.1.11 34697 2qruA 274 3.84e-09 1r3dA 264 4.00e-09 c.69.1.35 111680 3bdvA 191 4.21e-09 2qvbA 297 5.39e-09 1tcaA 317 5.59e-09 c.69.1.17 34726 1pjaA 302 5.87e-09 c.69.1.13 94758 3bf7A 255 6.27e-09 1y37A 304 7.20e-09 2o2iA 300 9.76e-09 2pl5A 366 1.78e-08 1gpl 432 1.91e-08 1qlwA 328 2.72e-08 c.69.1.15 34722 1jmkC 230 2.86e-08 c.69.1.22 71747 3bixA 574 4.87e-08 1ys1X 320 6.09e-08 1bu8A 452 6.60e-08 b.12.1.2,c.69.1.19 23647,34795 2rauA 354 8.05e-08 1thgA 544 9.23e-08 c.69.1.17 34763 1cvl 319 1.38e-07 2bceA 585 1.49e-07 c.69.1.1 34625 2hfkA 319 4.70e-07 2d80A 318 7.20e-07 2q0xA 335 8.21e-07 2cb9A 244 9.06e-07 1cvlA 319 1.03e-06 c.69.1.18 34786 1hplA 449 1.23e-06 b.12.1.2,c.69.1.19 23639,34787 1ivyA 452 1.55e-06 c.69.1.5 34654 1ac5A 483 5.45e-06 c.69.1.5 34653 2px6A 316 9.99e-06 1ac5 483 1.10e-05 2d81A 318 1.17e-05 1ispA 181 4.43e-05 c.69.1.18 76778 1i6wA 181 0.000181 c.69.1.18 61859 1tibA 269 0.000284 c.69.1.17 34738 1gt6A 269 0.000604 c.69.1.17 76342 1tib 269 0.001396 1uwcA 261 0.002820 c.69.1.17 100101 3tglA 269 0.004214 c.69.1.17 34733 2z5gA 387 0.004573 2bjhA 260 0.005198 1thtA 305 0.01936 c.69.1.13 34711 1whtA 256 0.02034 c.69.1.5 34646 1cexA 214 0.02719 c.69.1.30 31285 1whsA 255 0.03627 c.69.1.5 34649 1cex 214 0.08393 2dsnA 387 0.08690 2oryA 346 0.5814 1ku0A 388 1.173 c.69.1.18 72994 1whtB 153 1.208 1whsB 153 1.486 1g0cA 364 2.038 c.1.8.3 60165 1g66A 207 2.528 c.69.1.30 31329 2czqA 205 3.135 1db3A 372 6.765 c.2.1.2 29813 1jz8A 1023 6.944 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1vflA 356 7.350 c.1.9.1 120041 2csuA 457 8.245 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1m22A 503 9.535 c.117.1.1 78464 1ryiA 382 9.745 c.3.1.2,d.16.1.3 118813,118814 2bv9A 290 10.26 c.1.8.3 129242 1qh8A 478 10.30 c.92.2.3 35633 2ob3A 330 12.02 1edg 380 13.01 2cksA 306 13.30 2bfgA 503 13.52 b.71.1.2,c.1.8.3 128423,128424 1itxA 419 14.63 c.1.8.5,d.26.3.1 71425,71426 1to6A 371 15.18 c.141.1.1 107170 1yb0A 159 16.46 d.118.1.1 122865 2q3bA 313 17.39 3ctpA 330 18.02 2q4zA 312 18.89 1w85A 368 19.56 c.36.1.11 114335 2rkqA 169 20.70 2v9cA 215 21.24 1ve5A 311 21.27 c.79.1.1 120013 1t2aA 375 21.81 c.2.1.2 99078 1bg4A 302 22.02 c.1.8.3 28806 2f6kA 307 24.24 c.1.9.15 133047 1h1nA 305 24.45 c.1.8.3 70855 1orrA 347 24.57 c.2.1.2 93460 1z15A 344 24.57 1usgA 346 25.85 c.93.1.1 99864 2pqmA 343 25.85 1eqcA 394 26.41 c.1.8.3 28811 1vf8A 377 27.33 c.1.8.5,d.26.3.1 120029,120030 1eceA 358 28.33 c.1.8.3 28813 2qtwB 546 28.52 1mjnA 179 28.63 c.62.1.1 79210 2c2nA 339 29.23 1eiwA 111 29.81 c.23.3.1 31130 1ng4A 390 30.67 c.3.1.2,d.16.1.3 85666,85667 2jg2A 422 30.75 1xyzA 347 31.05 c.1.8.3 28804 1edqA 540 31.73 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2osxA 481 31.84 3clwA 507 33.23 1yt8A 539 33.36 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1wb0A 445 34.10 c.1.8.5,d.26.3.1 120825,120826 3c8uA 208 34.83 1n7hA 381 35.70 c.2.1.2 80250 1es9A 232 35.89 c.23.10.3 31340 1rxyA 253 36.54 c.56.2.1 98065 3c3jA 384 36.63 1z7yA 322 39.21 c.79.1.1 124679 2liv 344 39.88 1e3jA 352 39.98 b.35.1.2,c.2.1.1 24765,29781 1gu7A 364 40.49 b.35.1.2,c.2.1.1 83321,83322 1ceo 343 43.35 1gudA 288 43.52 c.93.1.1 83326 1x6vA 630 43.62 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qnrA 344 43.81 c.1.8.3 28834 1c93A 265 43.85 c.1.8.5 28998 1fcjA 322 44.62 c.79.1.1 35289 1e9lA 377 45.29 c.1.8.5,d.26.3.1 59395,59396 1tyfA 193 45.55 c.14.1.1 30885 2nm0A 253 45.59 1owqA 361 45.74 c.1.8.5,d.26.3.1 104041,104042 1p5jA 372 46.17 c.79.1.1 104067 1rh9A 373 47.02 c.1.8.3 118773 1o58A 303 47.28 c.79.1.1 92491 1jaeA 471 47.49 b.71.1.1,c.1.8.1 27773,28760 1vp8A 201 47.81 c.49.1.2 113947 2pc8A 400 47.87 2dri 271 48.03 1ctn 540 49.75 2grjA 192 50.21 1fh9A 312 51.28 c.1.8.3 28913 2h1yA 321 52.05 1j0aA 325 52.97 c.79.1.1 83871 1w1iE 357 53.74 c.1.9.1 109051 1zowA 313 53.83 1jndA 420 55.00 c.1.8.5,d.26.3.1 71757,71758 1lhpA 312 55.54 c.72.1.5 77960 2uz1A 563 56.23 1iirA 415 57.51 c.87.1.5 62453 1hdoA 206 57.93 c.2.1.2 60965 1yq2A 1024 58.00 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1z7wA 322 58.05 c.79.1.1 124674 2a3nA 355 58.76 2hpvA 208 59.14 1vhwA 253 59.62 c.56.2.1 100706 1v6tA 255 60.06 c.6.2.5 113550 2z2uA 311 60.39 2df8A 325 62.06 2bgxA 261 62.57 a.20.1.1,d.118.1.1 128504,128505 1uhvA 500 62.68 b.71.1.2,c.1.8.3 99402,99403 2fk8A 318 62.91 c.66.1.18 133648 1lfaA 187 62.92 c.62.1.1 34122 1h4pA 408 63.08 c.1.8.3 90617 2ax4A 198 63.43 1l1eA 287 66.47 c.66.1.18 73454 1hkkA 364 67.01 c.1.8.5,d.26.3.1 90634,90635 2dx6A 159 67.14 1v7cA 351 68.26 c.79.1.1 100446 1x92A 199 68.42 c.80.1.3 114976 1uf3A 228 68.94 d.159.1.6 99317 1hjsA 332 69.77 c.1.8.3 83492 1uuqA 440 70.33 c.1.8.3 100015 2rc5A 314 70.51 2bmaA 470 70.96 1f0kA 364 71.01 c.87.1.2 35465 1q0qA 406 71.46 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2cuyA 305 72.03 2ct8A 497 72.04 2ez9A 603 72.56 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ivnA 190 72.60 c.23.10.5 83719 2c1xA 456 72.76 2vjxA 846 73.60 1vmkA 277 73.61 c.56.2.1 113680 1k6xA 352 74.78 c.2.1.2 68238 1ve1A 304 75.20 c.79.1.1 120007 1yn9A 169 75.25 1rwtA 232 76.59 f.43.1.1 97992 1gewA 356 76.65 c.67.1.1 60470 1tk9A 188 76.90 c.80.1.3 107082 1zu4A 320 76.93 1xpkC 388 77.45 c.95.1.2,c.95.1.2 115747,115748 2i2wA 212 78.53 1fpzA 212 80.75 c.45.1.1 59976 2q62A 247 81.77 1z41A 338 82.28 c.1.4.1 124421 1qe5A 266 83.76 c.56.2.1 33784 2pfuA 99 84.69 1vbuA 328 86.15 c.1.8.3 119963 3cdxA 354 87.59 1ri5A 298 88.31 c.66.1.34 97502 1vemA 516 88.36 b.3.1.1,c.1.8.1 120021,120022 2c82A 413 89.04 2qt1A 207 89.58