# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 4.33e-26 2z3zA 706 1.31e-25 2hu5A 582 3.36e-25 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 3.91e-24 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 1.73e-23 b.70.3.1,c.69.1.24 115251,115252 1qfmA 710 4.90e-23 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 5.32e-23 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 5.36e-23 b.69.7.1,c.69.1.4 81087,81088 1yr2A 741 2.18e-22 2bklA 695 2.40e-22 2qm0A 275 2.94e-22 2uz0A 263 3.68e-22 2jbwA 386 9.61e-21 3c8dA 403 9.95e-21 1l7aA 318 2.01e-20 c.69.1.25 77772 1wb4A 297 2.19e-20 c.69.1.2 120827 2gzsA 278 2.87e-20 1vlqA 337 2.92e-20 c.69.1.25 108848 1pv1A 299 5.51e-20 c.69.1.34 111639 2i3dA 249 5.74e-20 2b20A 403 6.96e-20 b.1.18.20,c.69.1.2 127685,127686 1jjfA 268 7.77e-20 c.69.1.2 66765 1f0nA 285 8.15e-20 c.69.1.3 34636 2r8bA 251 1.13e-19 3b5eA 223 1.23e-19 2o2gA 223 5.80e-19 1lzlA 323 6.74e-19 c.69.1.2 78306 1fj2A 232 9.39e-19 c.69.1.14 34720 3bxpA 277 1.07e-18 2fx5A 258 1.29e-18 1jfrA 262 1.44e-18 c.69.1.16 34724 1zi8A 236 2.40e-18 1din 236 4.23e-18 1ycdA 243 4.66e-18 2fukA 220 4.96e-18 1jjiA 311 5.64e-18 c.69.1.2 66766 1u4nA 310 1.18e-17 c.69.1.2 113021 1r88A 280 3.00e-17 c.69.1.3 97219 1dqzA 280 4.77e-17 c.69.1.3 34638 1auoA 218 5.70e-17 c.69.1.14 34716 1mpxA 615 7.14e-17 b.18.1.13,c.69.1.21 85041,85042 1qe3A 489 8.48e-17 c.69.1.1 34630 1ufoA 238 1.41e-16 c.69.1.27 99344 1thg 544 1.51e-16 2hdwA 367 2.09e-16 1cleA 534 3.17e-16 c.69.1.17 34771 1p0iA 529 4.96e-16 c.69.1.1 93867 1ea5A 537 5.36e-16 c.69.1.1 34592 1llfA 534 6.12e-16 c.69.1.17 78094 1vkhA 273 6.93e-16 c.69.1.32 108662 1ukcA 522 1.90e-15 c.69.1.17 107911 2pblA 262 1.58e-14 1ju3A 583 2.04e-14 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 3.42e-14 1wm1A 317 6.63e-14 c.69.1.7 109405 2bce 581 1.03e-13 1imjA 210 1.35e-13 c.69.1.23 71246 1q0rA 298 2.26e-13 c.69.1.28 95508 1b6g 310 2.43e-13 1ede 310 2.58e-13 1j1iA 296 3.06e-13 c.69.1.10 83977 1hlgA 371 3.44e-13 c.69.1.6 34656 1jkmA 358 3.52e-13 c.69.1.2 34633 1k8qA 377 3.75e-13 c.69.1.6 72177 1qtrA 317 6.05e-13 c.69.1.7 34660 1azwA 313 1.35e-12 c.69.1.7 34658 1va4A 279 1.57e-12 c.69.1.12 108458 1mtzA 293 1.69e-12 c.69.1.7 79467 2o7rA 338 2.12e-12 1c4xA 285 2.12e-12 c.69.1.10 34684 1u2eA 289 2.67e-12 1ehyA 294 3.34e-12 c.69.1.11 34693 1uk8A 282 3.47e-12 c.69.1.10 107907 1a88A 275 3.84e-12 c.69.1.12 34707 1lnsA 763 4.31e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1bn7A 294 5.33e-12 c.69.1.8 34677 1yasA 257 5.83e-12 c.69.1.20 34801 1brt 277 6.27e-12 1tqhA 247 8.42e-12 c.69.1.29 107225 1broA 277 9.98e-12 c.69.1.12 34700 2veoA 441 1.29e-11 1hkhA 279 1.69e-11 c.69.1.12 90628 1womA 271 1.70e-11 1zoiA 276 1.76e-11 3bdiA 207 1.78e-11 1qj4A 257 1.85e-11 c.69.1.20 34796 1xqwA 293 2.50e-11 2cjpA 328 2.60e-11 1zd3A 555 2.90e-11 c.108.1.2,c.69.1.11 124930,124931 1xklA 273 3.26e-11 c.69.1.20 115410 2qjwA 176 3.58e-11 2r11A 306 4.45e-11 2ocgA 254 4.89e-11 1m33A 258 5.15e-11 c.69.1.26 78514 1r1dA 247 7.42e-11 c.69.1.29 96813 1b6gA 310 7.83e-11 c.69.1.8 34661 2rhwA 283 8.29e-11 2h7cA 542 8.30e-11 c.69.1.1 136207 1a8qA 274 8.87e-11 c.69.1.12 34702 2ogtA 498 9.17e-11 3bwxA 285 1.04e-10 1tca 317 1.05e-10 1a8sA 273 1.19e-10 c.69.1.12 34710 2puhA 286 1.25e-10 2og1A 286 1.57e-10 2e3jA 356 1.79e-10 1mj5A 302 1.87e-10 c.69.1.8 91285 2pujA 286 1.93e-10 1uxoA 192 2.02e-10 c.69.1.31 108121 3c5vA 316 2.20e-10 1cv2A 296 2.41e-10 c.69.1.8 34680 2yysA 286 3.49e-10 1brtA 277 3.81e-10 c.69.1.12 34699 2qmqA 286 6.74e-10 2b61A 377 9.38e-10 2qs9A 194 9.76e-10 1ei9A 279 1.18e-09 c.69.1.13 34713 2psdA 318 1.18e-09 1qo7A 394 1.18e-09 c.69.1.11 34697 1mnaA 298 1.30e-09 c.69.1.22 79322 3bf7A 255 1.40e-09 1r3dA 264 1.54e-09 c.69.1.35 111680 1pjaA 302 1.56e-09 c.69.1.13 94758 1tcaA 317 1.61e-09 c.69.1.17 34726 1y37A 304 3.45e-09 3bdvA 191 3.45e-09 1qlwA 328 3.66e-09 c.69.1.15 34722 1gpl 432 3.80e-09 2qruA 274 5.29e-09 1bu8A 452 5.88e-09 b.12.1.2,c.69.1.19 23647,34795 2qvbA 297 6.85e-09 2rauA 354 6.91e-09 2o2iA 300 9.32e-09 3bixA 574 1.27e-08 2pl5A 366 2.20e-08 1thgA 544 3.31e-08 c.69.1.17 34763 1jmkC 230 4.69e-08 c.69.1.22 71747 1ys1X 320 4.93e-08 1cvl 319 6.40e-08 2bceA 585 7.32e-08 c.69.1.1 34625 1hplA 449 3.20e-07 b.12.1.2,c.69.1.19 23639,34787 2d80A 318 3.44e-07 2hfkA 319 3.55e-07 2cb9A 244 6.47e-07 1cvlA 319 8.06e-07 c.69.1.18 34786 1ivyA 452 1.64e-06 c.69.1.5 34654 2q0xA 335 2.36e-06 2px6A 316 6.33e-06 2d81A 318 9.54e-06 1ac5A 483 1.13e-05 c.69.1.5 34653 1ispA 181 1.78e-05 c.69.1.18 76778 1ac5 483 2.07e-05 1i6wA 181 0.000113 c.69.1.18 61859 1gt6A 269 0.000374 c.69.1.17 76342 1tibA 269 0.000559 c.69.1.17 34738 1tib 269 0.002104 2z5gA 387 0.002536 1uwcA 261 0.002573 c.69.1.17 100101 2bjhA 260 0.01443 3tglA 269 0.02232 c.69.1.17 34733 1thtA 305 0.05411 c.69.1.13 34711 2dsnA 387 0.06686 1whtA 256 0.07847 c.69.1.5 34646 1cexA 214 0.08817 c.69.1.30 31285 1whsA 255 0.1696 c.69.1.5 34649 1cex 214 0.2650 1whtB 153 1.304 2oryA 346 1.333 1ku0A 388 1.455 c.69.1.18 72994 1whsB 153 1.701 2csuA 457 2.121 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1jz8A 1023 3.143 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1g66A 207 3.492 c.69.1.30 31329 1iirA 415 5.408 c.87.1.5 62453 2cksA 306 5.510 1qnrA 344 7.097 c.1.8.3 28834 1m22A 503 7.180 c.117.1.1 78464 1gu7A 364 7.739 b.35.1.2,c.2.1.1 83321,83322 1yt8A 539 8.188 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2czqA 205 8.302 1vflA 356 8.826 c.1.9.1 120041 1g0cA 364 10.09 c.1.8.3 60165 2jg2A 422 10.80 2rkqA 169 11.71 1ryiA 382 13.42 c.3.1.2,d.16.1.3 118813,118814 1db3A 372 15.01 c.2.1.2 29813 1ve5A 311 15.15 c.79.1.1 120013 2q4zA 312 18.02 1itxA 419 18.19 c.1.8.5,d.26.3.1 71425,71426 2ob3A 330 19.29 2bv9A 290 21.15 c.1.8.3 129242 1w85A 368 21.50 c.36.1.11 114335 1edg 380 23.15 1ceoA 343 23.33 c.1.8.3 28808 2vjxA 846 23.93 1orrA 347 24.75 c.2.1.2 93460 1bg4A 302 24.83 c.1.8.3 28806 1v7cA 351 24.90 c.79.1.1 100446 1rxyA 253 26.11 c.56.2.1 98065 1yb0A 159 27.15 d.118.1.1 122865 1vf8A 377 28.50 c.1.8.5,d.26.3.1 120029,120030 2bfgA 503 28.59 b.71.1.2,c.1.8.3 128423,128424 1eqcA 394 29.04 c.1.8.3 28811 1fpzA 212 29.19 c.45.1.1 59976 2q3bA 313 29.41 1v6tA 255 29.82 c.6.2.5 113550 1qh8A 478 30.04 c.92.2.3 35633 1pamA 686 30.07 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1p5jA 372 30.97 c.79.1.1 104067 2z2uA 311 30.97 1uf3A 228 32.67 d.159.1.6 99317 1pswA 348 32.80 c.87.1.7 88287 1tyfA 193 33.30 c.14.1.1 30885 1zowA 313 33.79 1eiwA 111 34.26 c.23.3.1 31130 1fh9A 312 34.86 c.1.8.3 28913 1jaeA 471 37.94 b.71.1.1,c.1.8.1 27773,28760 1r9jA 673 38.58 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1ve1A 304 39.31 c.79.1.1 120007 2e7zA 727 40.16 1t2aA 375 40.45 c.2.1.2 99078 2q62A 247 40.51 2nxwA 565 41.15 3ctpA 330 41.76 1hjsA 332 41.87 c.1.8.3 83492 1tjyA 316 42.36 c.93.1.1 107062 1e3jA 352 42.71 b.35.1.2,c.2.1.1 24765,29781 2ct8A 497 43.34 1xyzA 347 44.65 c.1.8.3 28804 1g3qA 237 44.85 c.37.1.10 60237 1b8oA 284 45.58 c.56.2.1 33762 2iv2X 715 46.60 b.52.2.2,c.81.1.1 137714,137715 1ceo 343 47.08 2dri 271 47.25 1n7hA 381 47.61 c.2.1.2 80250 1rh9A 373 47.63 c.1.8.3 118773 1f0kA 364 48.86 c.87.1.2 35465 1vmkA 277 50.04 c.56.2.1 113680 2f6kA 307 50.41 c.1.9.15 133047 1ivnA 190 50.44 c.23.10.5 83719 2ez9A 603 51.73 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1f74A 293 51.85 c.1.10.1 29079 3c8uA 208 51.92 1usgA 346 52.27 c.93.1.1 99864 1z15A 344 52.29 2v9cA 215 52.64 2dx6A 159 52.86 1eceA 358 53.35 c.1.8.3 28813 1umdA 367 53.62 c.36.1.11 99599 1o8uA 257 53.74 c.14.1.3 81194 2nm0A 253 53.81 1uhvA 500 54.67 b.71.1.2,c.1.8.3 99402,99403 1vhwA 253 55.56 c.56.2.1 100706 1szoA 257 57.00 c.14.1.3 106164 1k6xA 352 57.85 c.2.1.2 68238 1owqA 361 58.00 c.1.8.5,d.26.3.1 104041,104042 1gudA 288 58.69 c.93.1.1 83326 2eavA 165 59.70 1avaA 403 59.95 b.71.1.1,c.1.8.1 27797,28784 1hkkA 364 61.04 c.1.8.5,d.26.3.1 90634,90635 2c0hA 353 61.14 c.1.8.3 129594 1el5A 389 62.32 c.3.1.2,d.16.1.3 30369,37937 1e9lA 377 63.23 c.1.8.5,d.26.3.1 59395,59396 2c2nA 339 63.56 1fobA 334 64.27 c.1.8.3 83255 1o58A 303 64.37 c.79.1.1 92491 1h4pA 408 64.41 c.1.8.3 90617 1cp2A 269 66.04 c.37.1.10 32269 1q0qA 406 67.57 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2bmaA 470 68.03 1bqcA 302 69.13 c.1.8.3 28831 1w1iE 357 69.74 c.1.9.1 109051 1g2oA 268 69.86 c.56.2.1 60228 2q09A 416 70.81 2eaxA 164 70.85 1z7yA 322 73.07 c.79.1.1 124679 1h1nA 305 73.88 c.1.8.3 70855 2grjA 192 75.11 2fp4B 395 76.87 c.23.4.1,d.142.1.4 133897,133898 2uz1A 563 77.64 1p0kA 349 78.10 c.1.4.1 87648 1xpkC 388 78.66 c.95.1.2,c.95.1.2 115747,115748 1dv1A 449 79.10 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1j0aA 325 80.36 c.79.1.1 83871 1kngA 156 80.38 c.47.1.10 72777 2liv 344 81.42 1jndA 420 81.90 c.1.8.5,d.26.3.1 71757,71758 2dfaA 250 82.59 c.6.2.5 131469 1ri5A 298 84.86 c.66.1.34 97502 1y7lA 316 86.17 c.79.1.1 122695 3c3jA 384 86.71 1yu6A 275 86.77 c.41.1.1 124040 1fcjA 322 87.20 c.79.1.1 35289 1qs0A 407 89.81 c.36.1.11 31829