# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 3.11e-25 2z3zA 706 5.30e-25 2hu5A 582 1.06e-24 b.69.7.2,c.69.1.33 136763,136764 1xfdA 723 7.89e-23 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 1.05e-22 b.69.7.1,c.69.1.4 76596,76597 1orvA 728 1.15e-22 b.70.3.1,c.69.1.24 87354,87355 2qm0A 275 1.16e-22 1o6gA 710 1.30e-22 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 1.63e-22 b.69.7.1,c.69.1.4 27673,34641 1yr2A 741 2.83e-22 2bklA 695 5.55e-22 2uz0A 263 6.51e-22 3c8dA 403 1.11e-20 2jbwA 386 1.17e-20 1wb4A 297 1.41e-20 c.69.1.2 120827 1l7aA 318 1.74e-20 c.69.1.25 77772 1vlqA 337 2.39e-20 c.69.1.25 108848 1pv1A 299 3.62e-20 c.69.1.34 111639 2gzsA 278 3.65e-20 2i3dA 249 4.01e-20 2b20A 403 4.48e-20 b.1.18.20,c.69.1.2 127685,127686 2r8bA 251 6.88e-20 3b5eA 223 7.88e-20 1f0nA 285 1.46e-19 c.69.1.3 34636 2o2gA 223 5.90e-19 1jjfA 268 6.63e-19 c.69.1.2 66765 1zi8A 236 7.19e-19 1fj2A 232 7.77e-19 c.69.1.14 34720 3bxpA 277 1.24e-18 1din 236 1.28e-18 1ycdA 243 1.53e-18 1jfrA 262 1.62e-18 c.69.1.16 34724 2fx5A 258 2.25e-18 1lzlA 323 3.93e-18 c.69.1.2 78306 2fukA 220 5.88e-18 1jjiA 311 1.52e-17 c.69.1.2 66766 1r88A 280 2.78e-17 c.69.1.3 97219 1u4nA 310 3.73e-17 c.69.1.2 113021 1qe3A 489 4.26e-17 c.69.1.1 34630 1mpxA 615 4.71e-17 b.18.1.13,c.69.1.21 85041,85042 1thg 544 6.15e-17 1ufoA 238 6.59e-17 c.69.1.27 99344 1auoA 218 7.39e-17 c.69.1.14 34716 1ea5A 537 1.00e-16 c.69.1.1 34592 1cleA 534 1.17e-16 c.69.1.17 34771 1dqzA 280 1.17e-16 c.69.1.3 34638 1p0iA 529 1.21e-16 c.69.1.1 93867 1vkhA 273 2.26e-16 c.69.1.32 108662 1ukcA 522 3.78e-16 c.69.1.17 107911 1llfA 534 4.68e-16 c.69.1.17 78094 2hdwA 367 6.57e-16 2pblA 262 4.64e-15 1ju3A 583 2.09e-14 b.18.1.13,c.69.1.21 67300,67301 2bce 581 4.49e-14 1wm1A 317 8.40e-14 c.69.1.7 109405 2hm7A 310 1.50e-13 1imjA 210 2.44e-13 c.69.1.23 71246 1j1iA 296 4.80e-13 c.69.1.10 83977 1jkmA 358 5.54e-13 c.69.1.2 34633 1ede 310 6.79e-13 1b6g 310 6.82e-13 1qtrA 317 6.87e-13 c.69.1.7 34660 1hlgA 371 7.08e-13 c.69.1.6 34656 1q0rA 298 7.12e-13 c.69.1.28 95508 1k8qA 377 8.92e-13 c.69.1.6 72177 1azwA 313 1.12e-12 c.69.1.7 34658 1u2eA 289 1.43e-12 1ehyA 294 2.46e-12 c.69.1.11 34693 1va4A 279 2.88e-12 c.69.1.12 108458 1mtzA 293 2.93e-12 c.69.1.7 79467 1c4xA 285 3.00e-12 c.69.1.10 34684 1lnsA 763 3.25e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2o7rA 338 3.28e-12 1bn7A 294 4.13e-12 c.69.1.8 34677 1uk8A 282 4.59e-12 c.69.1.10 107907 2veoA 441 5.42e-12 1a88A 275 7.93e-12 c.69.1.12 34707 1tqhA 247 8.02e-12 c.69.1.29 107225 1yasA 257 8.92e-12 c.69.1.20 34801 2h7cA 542 1.32e-11 c.69.1.1 136207 1brt 277 1.49e-11 2qjwA 176 1.87e-11 1broA 277 2.01e-11 c.69.1.12 34700 1xqwA 293 2.42e-11 1zd3A 555 2.44e-11 c.108.1.2,c.69.1.11 124930,124931 1qj4A 257 2.82e-11 c.69.1.20 34796 1womA 271 3.38e-11 2cjpA 328 3.40e-11 1zoiA 276 3.55e-11 1tca 317 3.70e-11 1m33A 258 3.87e-11 c.69.1.26 78514 3bdiA 207 4.10e-11 1r1dA 247 4.23e-11 c.69.1.29 96813 1hkhA 279 4.95e-11 c.69.1.12 90628 2ogtA 498 5.06e-11 3c5vA 316 6.06e-11 2ocgA 254 7.27e-11 2r11A 306 7.90e-11 1xklA 273 9.41e-11 c.69.1.20 115410 1cv2A 296 9.49e-11 c.69.1.8 34680 1mj5A 302 1.08e-10 c.69.1.8 91285 2rhwA 283 1.13e-10 1b6gA 310 1.56e-10 c.69.1.8 34661 2og1A 286 1.76e-10 2e3jA 356 1.89e-10 2puhA 286 2.32e-10 1a8sA 273 2.65e-10 c.69.1.12 34710 3bwxA 285 2.75e-10 1ei9A 279 2.80e-10 c.69.1.13 34713 2pujA 286 2.83e-10 1mnaA 298 2.89e-10 c.69.1.22 79322 1a8qA 274 3.64e-10 c.69.1.12 34702 1uxoA 192 3.72e-10 c.69.1.31 108121 2b61A 377 4.08e-10 2psdA 318 5.69e-10 2qmqA 286 5.72e-10 2qruA 274 7.45e-10 1brtA 277 7.95e-10 c.69.1.12 34699 1gpl 432 8.65e-10 2yysA 286 8.98e-10 1r3dA 264 9.40e-10 c.69.1.35 111680 1tcaA 317 9.96e-10 c.69.1.17 34726 1pjaA 302 1.01e-09 c.69.1.13 94758 2qs9A 194 1.06e-09 1qo7A 394 1.16e-09 c.69.1.11 34697 3bdvA 191 1.35e-09 1y37A 304 1.44e-09 3bf7A 255 1.50e-09 1bu8A 452 2.17e-09 b.12.1.2,c.69.1.19 23647,34795 2rauA 354 2.36e-09 2qvbA 297 2.63e-09 2o2iA 300 5.42e-09 1qlwA 328 6.22e-09 c.69.1.15 34722 1ys1X 320 6.98e-09 2pl5A 366 8.09e-09 1thgA 544 1.08e-08 c.69.1.17 34763 1cvl 319 1.56e-08 1jmkC 230 1.69e-08 c.69.1.22 71747 3bixA 574 1.84e-08 1cvlA 319 1.10e-07 c.69.1.18 34786 2bceA 585 1.31e-07 c.69.1.1 34625 2hfkA 319 1.50e-07 1hplA 449 1.73e-07 b.12.1.2,c.69.1.19 23639,34787 2d80A 318 2.01e-07 2q0xA 335 6.18e-07 2cb9A 244 8.28e-07 1ivyA 452 3.96e-06 c.69.1.5 34654 2px6A 316 5.29e-06 2d81A 318 6.62e-06 1ispA 181 6.84e-06 c.69.1.18 76778 1ac5A 483 2.41e-05 c.69.1.5 34653 1ac5 483 2.70e-05 1i6wA 181 2.90e-05 c.69.1.18 61859 1gt6A 269 7.45e-05 c.69.1.17 76342 1tibA 269 0.000242 c.69.1.17 34738 1tib 269 0.000580 1uwcA 261 0.001029 c.69.1.17 100101 2z5gA 387 0.002311 2bjhA 260 0.002808 3tglA 269 0.009152 c.69.1.17 34733 1cexA 214 0.02273 c.69.1.30 31285 2dsnA 387 0.05698 1cex 214 0.07425 1thtA 305 0.1393 c.69.1.13 34711 1whtA 256 0.1643 c.69.1.5 34646 1whsA 255 0.4652 c.69.1.5 34649 2oryA 346 0.9861 1ku0A 388 0.9923 c.69.1.18 72994 2csuA 457 2.391 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1jz8A 1023 3.058 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1vflA 356 3.817 c.1.9.1 120041 1whtB 153 4.133 1g0cA 364 4.465 c.1.8.3 60165 1whsB 153 4.520 1qh8A 478 6.580 c.92.2.3 35633 1db3A 372 7.375 c.2.1.2 29813 1ceo 343 7.961 1g66A 207 8.690 c.69.1.30 31329 2bv9A 290 9.005 c.1.8.3 129242 2q4zA 312 9.028 1itxA 419 10.31 c.1.8.5,d.26.3.1 71425,71426 1m22A 503 10.87 c.117.1.1 78464 1eqcA 394 11.50 c.1.8.3 28811 1pamA 686 11.73 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1to6A 371 12.28 c.141.1.1 107170 1bg4A 302 13.13 c.1.8.3 28806 1ryiA 382 14.35 c.3.1.2,d.16.1.3 118813,118814 1ve5A 311 14.60 c.79.1.1 120013 1orrA 347 14.78 c.2.1.2 93460 1edg 380 14.91 2v9cA 215 15.45 2q62A 247 15.69 1yb0A 159 17.02 d.118.1.1 122865 1tjyA 316 19.07 c.93.1.1 107062 2pqmA 343 19.14 2q3bA 313 19.56 1k32A 1045 20.14 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2ob3A 330 20.86 1owqA 361 20.97 c.1.8.5,d.26.3.1 104041,104042 1qnrA 344 21.68 c.1.8.3 28834 1gudA 288 22.53 c.93.1.1 83326 2czqA 205 22.60 1rh9A 373 23.42 c.1.8.3 118773 2jg2A 422 24.06 1zowA 313 24.45 1yt8A 539 24.71 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2bfgA 503 25.51 b.71.1.2,c.1.8.3 128423,128424 1vf8A 377 26.12 c.1.8.5,d.26.3.1 120029,120030 3ctpA 330 26.26 1eceA 358 27.86 c.1.8.3 28813 1v7cA 351 28.04 c.79.1.1 100446 2dri 271 29.19 1eiwA 111 31.19 c.23.3.1 31130 2c2nA 339 31.61 1f0kA 364 33.01 c.87.1.2 35465 2qtwB 546 33.62 1vp8A 201 34.11 c.49.1.2 113947 1e9lA 377 34.33 c.1.8.5,d.26.3.1 59395,59396 1vmkA 277 34.55 c.56.2.1 113680 1t2aA 375 34.85 c.2.1.2 99078 2uz1A 563 35.27 1tyfA 193 35.37 c.14.1.1 30885 1wb0A 445 37.08 c.1.8.5,d.26.3.1 120825,120826 2z2uA 311 37.37 1w85A 368 37.47 c.36.1.11 114335 1xyzA 347 37.51 c.1.8.3 28804 2c0hA 353 38.09 c.1.8.3 129594 1vhwA 253 38.57 c.56.2.1 100706 2iv2X 715 39.94 b.52.2.2,c.81.1.1 137714,137715 1ceoA 343 40.18 c.1.8.3 28808 1rxyA 253 40.59 c.56.2.1 98065 1hkkA 364 42.78 c.1.8.5,d.26.3.1 90634,90635 1pswA 348 43.08 c.87.1.7 88287 1h1nA 305 43.64 c.1.8.3 70855 2dx6A 159 45.37 1e3jA 352 46.82 b.35.1.2,c.2.1.1 24765,29781 1fh9A 312 47.08 c.1.8.3 28913 1mjnA 179 47.27 c.62.1.1 79210 2jh3A 474 47.74 2ax4A 198 48.97 1avaA 403 51.53 b.71.1.1,c.1.8.1 27797,28784 2nm0A 253 51.86 1o58A 303 53.03 c.79.1.1 92491 1tk9A 188 53.79 c.80.1.3 107082 1ng4A 390 55.32 c.3.1.2,d.16.1.3 85666,85667 1gu7A 364 56.89 b.35.1.2,c.2.1.1 83321,83322 3c8uA 208 57.57 2q09A 416 57.84 1z7yA 322 57.87 c.79.1.1 124679 2d4wA 504 58.23 2yvaA 196 58.27 1h4pA 408 58.86 c.1.8.3 90617 2c82A 413 58.97 1ivnA 190 59.60 c.23.10.5 83719 2nu8B 388 60.33 2fk8A 318 60.80 c.66.1.18 133648 1jndA 420 61.44 c.1.8.5,d.26.3.1 71757,71758 1fcjA 322 61.62 c.79.1.1 35289 2ct8A 497 62.57 1hjsA 332 64.55 c.1.8.3 83492 2cksA 306 64.67 1uuqA 440 64.91 c.1.8.3 100015 1n7hA 381 65.76 c.2.1.2 80250 2osxA 481 66.23 1o89A 345 66.63 b.35.1.2,c.2.1.1 92644,92645 1fobA 334 67.01 c.1.8.3 83255 2hpvA 208 67.83 1qe5A 266 68.49 c.56.2.1 33784 1q0qA 406 68.55 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1l1eA 287 68.66 c.66.1.18 73454 2gt1A 326 69.02 2eaxA 164 69.03 1x92A 199 69.33 c.80.1.3 114976 2f6kA 307 70.39 c.1.9.15 133047 2hcuA 213 72.27 1ajsA 412 74.26 c.67.1.1 34276 3clwA 507 74.45 2v3gA 283 74.80 1hjxA 362 75.41 c.1.8.5,d.26.3.1 83512,83513 1vjzA 341 75.50 c.1.8.3 100838 1v72A 356 76.26 c.67.1.1 119860 1w1iE 357 76.32 c.1.9.1 109051 1ll7A 392 77.70 c.1.8.5,d.26.3.1 78085,78086 1k2yX 463 77.80 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2e7zA 727 78.05 1z15A 344 78.30 1b8oA 284 78.36 c.56.2.1 33762 2o55A 258 78.90 1o8uA 257 79.12 c.14.1.3 81194 1fpzA 212 80.53 c.45.1.1 59976 1x6vA 630 80.86 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3cdxA 354 80.97 2bgxA 261 81.20 a.20.1.1,d.118.1.1 128504,128505 2cuyA 305 81.56 1dv1A 449 81.72 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1p5jA 372 82.04 c.79.1.1 104067 2i2wA 212 83.12 1bkpA 278 83.21 d.117.1.1 41029 1v0wA 506 83.32 d.136.1.2,d.136.1.2 108220,108221 1iirA 415 83.95 c.87.1.5 62453 1jaeA 471 85.22 b.71.1.1,c.1.8.1 27773,28760 1bdbA 277 85.41 c.2.1.2 29874 1lfaA 187 86.08 c.62.1.1 34122 1g2oA 268 86.14 c.56.2.1 60228 1szoA 257 88.04 c.14.1.3 106164 2jfgA 445 88.11 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1usgA 346 89.10 c.93.1.1 99864 1b63A 333 89.64 d.14.1.3,d.122.1.2 37566,41107