# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.50e-24 2z3zA 706 4.36e-24 2hu5A 582 8.50e-24 b.69.7.2,c.69.1.33 136763,136764 1xfdA 723 4.05e-22 b.70.3.1,c.69.1.24 115251,115252 1orvA 728 4.92e-22 b.70.3.1,c.69.1.24 87354,87355 1h2wA 710 6.57e-22 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 1.05e-21 b.69.7.1,c.69.1.4 81087,81088 2qm0A 275 1.12e-21 1qfmA 710 1.17e-21 b.69.7.1,c.69.1.4 27673,34641 1yr2A 741 1.85e-21 2bklA 695 4.15e-21 2uz0A 263 5.09e-21 2jbwA 386 7.36e-20 3c8dA 403 9.53e-20 1vlqA 337 9.90e-20 c.69.1.25 108848 1wb4A 297 1.18e-19 c.69.1.2 120827 1l7aA 318 1.22e-19 c.69.1.25 77772 2i3dA 249 1.89e-19 2b20A 403 2.01e-19 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 2.02e-19 1pv1A 299 2.54e-19 c.69.1.34 111639 2r8bA 251 3.14e-19 3b5eA 223 3.65e-19 1f0nA 285 7.03e-19 c.69.1.3 34636 1fj2A 232 2.37e-18 c.69.1.14 34720 2o2gA 223 3.64e-18 1jjfA 268 3.83e-18 c.69.1.2 66765 1zi8A 236 3.91e-18 1ycdA 243 4.52e-18 3bxpA 277 4.91e-18 1jfrA 262 5.24e-18 c.69.1.16 34724 1din 236 5.59e-18 2fx5A 258 7.87e-18 1lzlA 323 1.65e-17 c.69.1.2 78306 2fukA 220 2.83e-17 1jjiA 311 7.38e-17 c.69.1.2 66766 1u4nA 310 1.43e-16 c.69.1.2 113021 1qe3A 489 1.47e-16 c.69.1.1 34630 1ufoA 238 1.54e-16 c.69.1.27 99344 1r88A 280 1.62e-16 c.69.1.3 97219 1auoA 218 2.45e-16 c.69.1.14 34716 1thg 544 3.26e-16 1mpxA 615 3.55e-16 b.18.1.13,c.69.1.21 85041,85042 1cleA 534 4.32e-16 c.69.1.17 34771 1p0iA 529 4.78e-16 c.69.1.1 93867 1ea5A 537 4.90e-16 c.69.1.1 34592 1dqzA 280 4.93e-16 c.69.1.3 34638 1vkhA 273 5.44e-16 c.69.1.32 108662 1ukcA 522 1.09e-15 c.69.1.17 107911 1llfA 534 1.68e-15 c.69.1.17 78094 2hdwA 367 2.63e-15 2pblA 262 1.53e-14 2bce 581 1.10e-13 1ju3A 583 1.34e-13 b.18.1.13,c.69.1.21 67300,67301 1wm1A 317 2.14e-13 c.69.1.7 109405 2hm7A 310 3.79e-13 1imjA 210 5.99e-13 c.69.1.23 71246 1j1iA 296 1.07e-12 c.69.1.10 83977 1hlgA 371 1.67e-12 c.69.1.6 34656 1b6g 310 1.73e-12 1qtrA 317 1.77e-12 c.69.1.7 34660 1jkmA 358 1.80e-12 c.69.1.2 34633 1q0rA 298 1.80e-12 c.69.1.28 95508 1ede 310 1.91e-12 1k8qA 377 2.81e-12 c.69.1.6 72177 1u2eA 289 3.13e-12 1azwA 313 3.20e-12 c.69.1.7 34658 1c4xA 285 6.85e-12 c.69.1.10 34684 2o7rA 338 6.93e-12 1ehyA 294 7.28e-12 c.69.1.11 34693 1va4A 279 8.14e-12 c.69.1.12 108458 1mtzA 293 8.20e-12 c.69.1.7 79467 2veoA 441 8.58e-12 1uk8A 282 9.47e-12 c.69.1.10 107907 1bn7A 294 1.05e-11 c.69.1.8 34677 1lnsA 763 1.61e-11 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1tqhA 247 1.72e-11 c.69.1.29 107225 1yasA 257 1.76e-11 c.69.1.20 34801 1a88A 275 2.16e-11 c.69.1.12 34707 1brt 277 3.26e-11 1broA 277 3.92e-11 c.69.1.12 34700 2qjwA 176 3.93e-11 1qj4A 257 4.48e-11 c.69.1.20 34796 1womA 271 6.00e-11 2h7cA 542 6.17e-11 c.69.1.1 136207 1r1dA 247 6.31e-11 c.69.1.29 96813 1xqwA 293 6.35e-11 1zd3A 555 6.48e-11 c.108.1.2,c.69.1.11 124930,124931 1m33A 258 7.64e-11 c.69.1.26 78514 2cjpA 328 7.76e-11 3bdiA 207 7.83e-11 1tca 317 7.90e-11 1hkhA 279 9.78e-11 c.69.1.12 90628 3c5vA 316 1.06e-10 1zoiA 276 1.09e-10 2ogtA 498 1.37e-10 2r11A 306 1.45e-10 2ocgA 254 1.74e-10 1xklA 273 1.88e-10 c.69.1.20 115410 1mj5A 302 1.97e-10 c.69.1.8 91285 1cv2A 296 2.05e-10 c.69.1.8 34680 2rhwA 283 2.49e-10 1b6gA 310 2.99e-10 c.69.1.8 34661 2og1A 286 3.94e-10 2puhA 286 4.98e-10 2e3jA 356 5.23e-10 2pujA 286 5.45e-10 1uxoA 192 5.87e-10 c.69.1.31 108121 1a8sA 273 6.09e-10 c.69.1.12 34710 2b61A 377 6.09e-10 3bwxA 285 7.30e-10 1ei9A 279 8.04e-10 c.69.1.13 34713 2psdA 318 1.02e-09 1mnaA 298 1.05e-09 c.69.1.22 79322 1a8qA 274 1.17e-09 c.69.1.12 34702 2qmqA 286 1.20e-09 1brtA 277 1.58e-09 c.69.1.12 34699 1r3dA 264 1.81e-09 c.69.1.35 111680 1tcaA 317 1.82e-09 c.69.1.17 34726 2qruA 274 1.87e-09 2yysA 286 2.08e-09 2qs9A 194 2.22e-09 3bdvA 191 2.32e-09 3bf7A 255 2.41e-09 1gpl 432 2.50e-09 1pjaA 302 2.64e-09 c.69.1.13 94758 1qo7A 394 2.71e-09 c.69.1.11 34697 1y37A 304 3.39e-09 1bu8A 452 4.97e-09 b.12.1.2,c.69.1.19 23647,34795 2qvbA 297 5.08e-09 2rauA 354 7.76e-09 2o2iA 300 9.24e-09 1qlwA 328 9.33e-09 c.69.1.15 34722 2pl5A 366 1.23e-08 1ys1X 320 1.43e-08 1cvl 319 2.84e-08 3bixA 574 2.96e-08 1jmkC 230 2.99e-08 c.69.1.22 71747 1thgA 544 3.07e-08 c.69.1.17 34763 2bceA 585 1.76e-07 c.69.1.1 34625 1cvlA 319 1.90e-07 c.69.1.18 34786 2hfkA 319 2.54e-07 1hplA 449 2.87e-07 b.12.1.2,c.69.1.19 23639,34787 2d80A 318 3.02e-07 2q0xA 335 1.15e-06 2cb9A 244 1.49e-06 1ivyA 452 6.09e-06 c.69.1.5 34654 2d81A 318 7.53e-06 2px6A 316 8.71e-06 1ispA 181 1.10e-05 c.69.1.18 76778 1ac5A 483 2.97e-05 c.69.1.5 34653 1ac5 483 3.60e-05 1i6wA 181 4.66e-05 c.69.1.18 61859 1gt6A 269 0.000212 c.69.1.17 76342 1tibA 269 0.000373 c.69.1.17 34738 1uwcA 261 0.001633 c.69.1.17 100101 1tib 269 0.002185 2z5gA 387 0.002955 2bjhA 260 0.003586 3tglA 269 0.006578 c.69.1.17 34733 1cexA 214 0.03223 c.69.1.30 31285 2dsnA 387 0.05567 1thtA 305 0.09344 c.69.1.13 34711 1cex 214 0.1157 1whtA 256 0.2204 c.69.1.5 34646 1whsA 255 0.6654 c.69.1.5 34649 2oryA 346 0.8621 1ku0A 388 0.9341 c.69.1.18 72994 1vflA 356 3.100 c.1.9.1 120041 2csuA 457 3.180 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1whtB 153 4.857 1jz8A 1023 5.037 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1g66A 207 5.291 c.69.1.30 31329 1whsB 153 5.357 1qh8A 478 6.720 c.92.2.3 35633 1g0cA 364 6.800 c.1.8.3 60165 1db3A 372 7.302 c.2.1.2 29813 2bv9A 290 7.396 c.1.8.3 129242 1ceo 343 7.479 1itxA 419 7.825 c.1.8.5,d.26.3.1 71425,71426 1ve5A 311 8.424 c.79.1.1 120013 1eqcA 394 10.84 c.1.8.3 28811 1pamA 686 11.67 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1orrA 347 11.69 c.2.1.2 93460 2q4zA 312 11.78 1bg4A 302 11.93 c.1.8.3 28806 1m22A 503 12.56 c.117.1.1 78464 2v9cA 215 13.68 1to6A 371 16.20 c.141.1.1 107170 2q3bA 313 16.81 1yb0A 159 16.95 d.118.1.1 122865 1edg 380 17.68 1vf8A 377 19.78 c.1.8.5,d.26.3.1 120029,120030 3ctpA 330 20.22 2bfgA 503 20.77 b.71.1.2,c.1.8.3 128423,128424 1pswA 348 21.27 c.87.1.7 88287 2ob3A 330 21.82 1owqA 361 22.37 c.1.8.5,d.26.3.1 104041,104042 1t2aA 375 22.52 c.2.1.2 99078 2pqmA 343 22.94 1ryiA 382 24.59 c.3.1.2,d.16.1.3 118813,118814 1v7cA 351 24.77 c.79.1.1 100446 1yt8A 539 24.83 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rh9A 373 24.95 c.1.8.3 118773 2uz1A 563 25.55 2q62A 247 27.73 2c2nA 339 27.76 1zowA 313 29.34 1e9lA 377 29.52 c.1.8.5,d.26.3.1 59395,59396 1eiwA 111 30.00 c.23.3.1 31130 1k32A 1045 30.22 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1xyzA 347 30.39 c.1.8.3 28804 2czqA 205 30.62 1qnrA 344 30.76 c.1.8.3 28834 1tyfA 193 31.21 c.14.1.1 30885 1gudA 288 31.30 c.93.1.1 83326 1f0kA 364 31.88 c.87.1.2 35465 1vmkA 277 31.96 c.56.2.1 113680 1e3jA 352 32.24 b.35.1.2,c.2.1.1 24765,29781 1w85A 368 33.40 c.36.1.11 114335 1vhwA 253 33.99 c.56.2.1 100706 2dri 271 34.06 1eceA 358 34.46 c.1.8.3 28813 1hkkA 364 35.60 c.1.8.5,d.26.3.1 90634,90635 1rxyA 253 38.54 c.56.2.1 98065 2z2uA 311 39.11 1tjyA 316 39.85 c.93.1.1 107062 1wb0A 445 40.00 c.1.8.5,d.26.3.1 120825,120826 1mjnA 179 41.62 c.62.1.1 79210 1fh9A 312 43.26 c.1.8.3 28913 2jg2A 422 45.20 2gt1A 326 45.70 1n7hA 381 46.23 c.2.1.2 80250 2q09A 416 47.54 2qtwB 546 49.39 1tk9A 188 49.69 c.80.1.3 107082 1vp8A 201 49.76 c.49.1.2 113947 1w1iE 357 50.42 c.1.9.1 109051 2cksA 306 51.00 2ct8A 497 51.22 2c82A 413 51.87 1ceoA 343 52.71 c.1.8.3 28808 1p5jA 372 53.14 c.79.1.1 104067 1h1nA 305 53.25 c.1.8.3 70855 2c0hA 353 53.64 c.1.8.3 129594 2ax4A 198 53.85 1gu7A 364 54.25 b.35.1.2,c.2.1.1 83321,83322 1ivnA 190 55.88 c.23.10.5 83719 2c1xA 456 56.16 2yvaA 196 56.20 2osxA 481 56.93 2nm0A 253 57.99 2cuyA 305 58.16 2dx6A 159 58.16 1edqA 540 58.53 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2iv2X 715 60.28 b.52.2.2,c.81.1.1 137714,137715 1q0qA 406 61.80 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1hjsA 332 61.96 c.1.8.3 83492 1fcjA 322 62.20 c.79.1.1 35289 2i2wA 212 62.29 2f6kA 307 63.06 c.1.9.15 133047 1uuqA 440 63.62 c.1.8.3 100015 2hpvA 208 63.64 2d4wA 504 64.08 1bkpA 278 64.26 d.117.1.1 41029 1ll7A 392 64.51 c.1.8.5,d.26.3.1 78085,78086 1ng4A 390 64.91 c.3.1.2,d.16.1.3 85666,85667 1x6vA 630 65.12 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1v0wA 506 65.33 d.136.1.2,d.136.1.2 108220,108221 2fk8A 318 65.50 c.66.1.18 133648 1o89A 345 66.07 b.35.1.2,c.2.1.1 92644,92645 1z7yA 322 66.14 c.79.1.1 124679 1fobA 334 66.72 c.1.8.3 83255 1l1eA 287 66.82 c.66.1.18 73454 3c8uA 208 67.01 1avaA 403 67.53 b.71.1.1,c.1.8.1 27797,28784 1h4pA 408 68.02 c.1.8.3 90617 1ajsA 412 68.12 c.67.1.1 34276 3clwA 507 70.55 1e8cA 498 71.84 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1z15A 344 72.82 1qe5A 266 73.44 c.56.2.1 33784 1o58A 303 73.91 c.79.1.1 92491 2jh3A 474 74.06 1b8oA 284 76.25 c.56.2.1 33762 1usgA 346 76.80 c.93.1.1 99864 2ez9A 603 76.84 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2o55A 258 76.92 1x92A 199 77.66 c.80.1.3 114976 2nu8B 388 77.82 1lfaA 187 77.82 c.62.1.1 34122 1xpkC 388 78.04 c.95.1.2,c.95.1.2 115747,115748 1hjxA 362 79.93 c.1.8.5,d.26.3.1 83512,83513 1bdbA 277 80.40 c.2.1.2 29874 2hcuA 213 81.44 1jndA 420 82.08 c.1.8.5,d.26.3.1 71757,71758 1e5eA 404 82.28 c.67.1.3 59265 1fpzA 212 82.86 c.45.1.1 59976 2jfgA 445 83.06 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1v72A 356 83.21 c.67.1.1 119860 1o8uA 257 83.23 c.14.1.3 81194 2nxwA 565 83.30 1hzdA 272 84.03 c.14.1.3 65969 2v3gA 283 85.45 2bgxA 261 85.67 a.20.1.1,d.118.1.1 128504,128505 1c93A 265 85.73 c.1.8.5 28998 2b4gA 317 86.37 c.1.4.1 127829 1vjzA 341 87.08 c.1.8.3 100838 1gewA 356 87.38 c.67.1.1 60470 1szoA 257 88.09 c.14.1.3 106164 2h1yA 321 89.69