# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.02e-21 2hu5A 582 1.45e-21 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 3.83e-21 1orvA 728 1.03e-19 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 2.39e-19 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 7.22e-19 1qfmA 710 8.47e-19 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 2.73e-18 b.69.7.1,c.69.1.4 76596,76597 2uz0A 263 3.82e-18 2jbwA 386 7.40e-18 1o6gA 710 8.18e-18 b.69.7.1,c.69.1.4 81087,81088 1l7aA 318 1.15e-17 c.69.1.25 77772 2bklA 695 1.33e-17 1wb4A 297 1.49e-17 c.69.1.2 120827 2r8bA 251 1.49e-17 2i3dA 249 1.57e-17 3c8dA 403 1.80e-17 1pv1A 299 1.92e-17 c.69.1.34 111639 2b20A 403 2.07e-17 b.1.18.20,c.69.1.2 127685,127686 3b5eA 223 2.55e-17 1yr2A 741 2.65e-17 2gzsA 278 2.85e-17 1vlqA 337 4.80e-17 c.69.1.25 108848 1f0nA 285 1.27e-16 c.69.1.3 34636 2o2gA 223 1.33e-16 1zi8A 236 1.71e-16 1jjfA 268 1.74e-16 c.69.1.2 66765 1ycdA 243 2.03e-16 1din 236 2.73e-16 2fx5A 258 3.57e-16 3bxpA 277 4.64e-16 1lzlA 323 4.80e-16 c.69.1.2 78306 1fj2A 232 5.59e-16 c.69.1.14 34720 1jfrA 262 8.30e-16 c.69.1.16 34724 1ufoA 238 1.67e-15 c.69.1.27 99344 1jjiA 311 2.11e-15 c.69.1.2 66766 1u4nA 310 2.73e-15 c.69.1.2 113021 2fukA 220 2.76e-15 1auoA 218 5.73e-15 c.69.1.14 34716 1mpxA 615 1.25e-14 b.18.1.13,c.69.1.21 85041,85042 1qe3A 489 1.79e-14 c.69.1.1 34630 1ea5A 537 1.82e-14 c.69.1.1 34592 1p0iA 529 2.99e-14 c.69.1.1 93867 1r88A 280 3.15e-14 c.69.1.3 97219 1dqzA 280 3.19e-14 c.69.1.3 34638 1vkhA 273 4.36e-14 c.69.1.32 108662 1thg 544 5.93e-14 2hdwA 367 9.62e-14 1llfA 534 1.44e-13 c.69.1.17 78094 1cleA 534 1.52e-13 c.69.1.17 34771 1ukcA 522 6.74e-13 c.69.1.17 107911 2pblA 262 6.92e-13 1ju3A 583 1.10e-12 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 1.84e-12 2bce 581 4.01e-12 1wm1A 317 4.20e-12 c.69.1.7 109405 1imjA 210 4.79e-12 c.69.1.23 71246 1hlgA 371 1.04e-11 c.69.1.6 34656 1jkmA 358 1.22e-11 c.69.1.2 34633 1q0rA 298 1.23e-11 c.69.1.28 95508 1qtrA 317 1.39e-11 c.69.1.7 34660 1k8qA 377 1.44e-11 c.69.1.6 72177 1j1iA 296 1.86e-11 c.69.1.10 83977 2o7rA 338 2.46e-11 1azwA 313 2.63e-11 c.69.1.7 34658 1c4xA 285 3.01e-11 c.69.1.10 34684 1uk8A 282 3.47e-11 c.69.1.10 107907 1mtzA 293 4.18e-11 c.69.1.7 79467 1b6g 310 4.82e-11 1u2eA 289 5.08e-11 1tqhA 247 5.70e-11 c.69.1.29 107225 1bn7A 294 7.56e-11 c.69.1.8 34677 1ede 310 8.00e-11 1ehyA 294 1.01e-10 c.69.1.11 34693 1va4A 279 1.10e-10 c.69.1.12 108458 1womA 271 2.14e-10 3bdiA 207 2.36e-10 2ocgA 254 2.78e-10 1xqwA 293 2.95e-10 1a88A 275 3.08e-10 c.69.1.12 34707 1yasA 257 3.33e-10 c.69.1.20 34801 2veoA 441 3.67e-10 1brt 277 3.74e-10 1xklA 273 3.90e-10 c.69.1.20 115410 1broA 277 4.34e-10 c.69.1.12 34700 1r1dA 247 4.65e-10 c.69.1.29 96813 1hkhA 279 7.08e-10 c.69.1.12 90628 2qjwA 176 7.19e-10 1m33A 258 7.38e-10 c.69.1.26 78514 1zd3A 555 7.87e-10 c.108.1.2,c.69.1.11 124930,124931 1qj4A 257 8.47e-10 c.69.1.20 34796 1tca 317 9.55e-10 2r11A 306 1.10e-09 3bwxA 285 1.19e-09 2h7cA 542 1.29e-09 c.69.1.1 136207 2cjpA 328 1.36e-09 1zoiA 276 1.40e-09 1b6gA 310 2.04e-09 c.69.1.8 34661 2e3jA 356 2.15e-09 2rhwA 283 2.35e-09 1lnsA 763 2.47e-09 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2puhA 286 2.55e-09 2ogtA 498 2.71e-09 1cv2A 296 2.75e-09 c.69.1.8 34680 2og1A 286 3.18e-09 1mj5A 302 3.29e-09 c.69.1.8 91285 2b61A 377 3.89e-09 2yysA 286 3.91e-09 2pujA 286 4.09e-09 3c5vA 316 4.37e-09 1a8sA 273 4.54e-09 c.69.1.12 34710 1a8qA 274 5.43e-09 c.69.1.12 34702 1r3dA 264 5.76e-09 c.69.1.35 111680 3bf7A 255 5.86e-09 1uxoA 192 5.94e-09 c.69.1.31 108121 3bdvA 191 5.95e-09 2qmqA 286 7.39e-09 1tcaA 317 1.29e-08 c.69.1.17 34726 1ei9A 279 1.39e-08 c.69.1.13 34713 1mnaA 298 1.41e-08 c.69.1.22 79322 2psdA 318 1.70e-08 1y37A 304 2.08e-08 1bu8A 452 2.17e-08 b.12.1.2,c.69.1.19 23647,34795 1brtA 277 2.40e-08 c.69.1.12 34699 1qo7A 394 3.37e-08 c.69.1.11 34697 2qruA 274 3.40e-08 1gpl 432 4.04e-08 2pl5A 366 4.53e-08 2qs9A 194 4.57e-08 2rauA 354 4.68e-08 1ys1X 320 5.11e-08 1pjaA 302 5.41e-08 c.69.1.13 94758 2o2iA 300 8.62e-08 2qvbA 297 1.29e-07 1cvl 319 1.63e-07 1qlwA 328 2.31e-07 c.69.1.15 34722 1cvlA 319 4.71e-07 c.69.1.18 34786 2bceA 585 4.99e-07 c.69.1.1 34625 3bixA 574 5.90e-07 1thgA 544 7.15e-07 c.69.1.17 34763 1jmkC 230 7.49e-07 c.69.1.22 71747 2hfkA 319 9.10e-07 2d80A 318 1.04e-06 2q0xA 335 2.00e-06 1hplA 449 2.68e-06 b.12.1.2,c.69.1.19 23639,34787 2cb9A 244 5.43e-06 2d81A 318 6.57e-06 1ac5 483 1.68e-05 1ivyA 452 1.71e-05 c.69.1.5 34654 1ispA 181 2.55e-05 c.69.1.18 76778 1ac5A 483 3.19e-05 c.69.1.5 34653 1i6wA 181 4.78e-05 c.69.1.18 61859 2px6A 316 4.98e-05 1tibA 269 0.001890 c.69.1.17 34738 1gt6A 269 0.003423 c.69.1.17 76342 3tglA 269 0.003858 c.69.1.17 34733 1uwcA 261 0.005118 c.69.1.17 100101 2z5gA 387 0.007837 1thtA 305 0.01009 c.69.1.13 34711 2bjhA 260 0.01261 1tib 269 0.01307 1cexA 214 0.05464 c.69.1.30 31285 2dsnA 387 0.05498 1cex 214 0.07385 2csuA 457 1.180 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1whtA 256 1.185 c.69.1.5 34646 1g0cA 364 1.214 c.1.8.3 60165 1ku0A 388 1.222 c.69.1.18 72994 1whsA 255 1.407 c.69.1.5 34649 2oryA 346 1.766 2bv9A 290 4.399 c.1.8.3 129242 2cksA 306 4.438 1ceoA 343 5.063 c.1.8.3 28808 1whtB 153 5.407 1ceo 343 5.762 1whsB 153 6.131 1m22A 503 6.538 c.117.1.1 78464 2czqA 205 6.719 1iirA 415 6.825 c.87.1.5 62453 1ryiA 382 8.095 c.3.1.2,d.16.1.3 118813,118814 1vflA 356 9.060 c.1.9.1 120041 2v3gA 283 9.067 1g66A 207 11.46 c.69.1.30 31329 2rkqA 169 12.30 1h1nA 305 13.13 c.1.8.3 70855 1bg4A 302 13.51 c.1.8.3 28806 1eqcA 394 14.24 c.1.8.3 28811 1qnrA 344 14.60 c.1.8.3 28834 1pswA 348 16.59 c.87.1.7 88287 1yb0A 159 17.31 d.118.1.1 122865 1eceA 358 18.65 c.1.8.3 28813 1jaeA 471 18.83 b.71.1.1,c.1.8.1 27773,28760 2o55A 258 18.96 2d4wA 504 21.75 1qh8A 478 22.31 c.92.2.3 35633 1f74A 293 23.06 c.1.10.1 29079 1uuqA 440 23.89 c.1.8.3 100015 2f6kA 307 25.42 c.1.9.15 133047 1qgoA 264 26.75 c.92.1.2 35596 1c93A 265 27.95 c.1.8.5 28998 1db3A 372 29.12 c.2.1.2 29813 1vf8A 377 29.26 c.1.8.5,d.26.3.1 120029,120030 3c8uA 208 30.38 2dri 271 30.99 1v6tA 255 31.45 c.6.2.5 113550 1vjzA 341 31.67 c.1.8.3 100838 1ewkA 490 31.87 c.93.1.1 35712 1wb0A 445 32.28 c.1.8.5,d.26.3.1 120825,120826 2p3rA 510 33.28 c.55.1.4,c.55.1.4 139471,139472 1uf3A 228 34.20 d.159.1.6 99317 1hkkA 364 34.39 c.1.8.5,d.26.3.1 90634,90635 1w1iE 357 34.79 c.1.9.1 109051 2c0hA 353 35.17 c.1.8.3 129594 1edg 380 35.94 1t2aA 375 38.63 c.2.1.2 99078 3ctpA 330 38.87 1ng4A 390 39.00 c.3.1.2,d.16.1.3 85666,85667 1tvnA 293 39.48 c.1.8.3 119360 1ve5A 311 41.08 c.79.1.1 120013 2cuyA 305 41.23 1z41A 338 41.25 c.1.4.1 124421 2jg2A 422 42.06 2ob3A 330 42.48 2f2hA 773 46.58 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1xyzA 347 46.65 c.1.8.3 28804 1eiwA 111 49.26 c.23.3.1 31130 3bq9A 460 50.68 1o5kA 306 53.54 c.1.10.1 92504 1rh9A 373 54.41 c.1.8.3 118773 2r8wA 332 56.05 2rfgA 297 56.27 1ra0A 430 57.04 b.92.1.2,c.1.9.5 111756,111757 2osxA 481 57.22 1hl2A 297 57.46 c.1.10.1 83581 1dorA 311 58.02 c.1.4.1 28595 1uroA 367 58.08 c.1.22.1 29675 1jz8A 1023 58.36 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1e9lA 377 59.10 c.1.8.5,d.26.3.1 59395,59396 2v9cA 215 60.44 2dvtA 327 61.06 c.1.9.15 131793 1ad4A 266 61.32 c.1.21.1 29670 8abp 306 61.46 1mjnA 179 61.80 c.62.1.1 79210 1kngA 156 61.80 c.47.1.10 72777 2bfgA 503 62.27 b.71.1.2,c.1.8.3 128423,128424 2e7zA 727 62.58 1r3sA 367 62.86 c.1.22.1 96963 2h1yA 321 64.45 2qtwB 546 64.48 2jfgA 445 64.76 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1bdbA 277 64.78 c.2.1.2 29874 1oheA 348 66.58 c.45.1.1,c.45.1.1 87013,87014 1vlwA 217 67.77 c.1.10.1 108868 1vd6A 224 67.79 c.1.18.3 119991 2ragA 417 67.86 1itxA 419 68.44 c.1.8.5,d.26.3.1 71425,71426 1ivnA 190 68.71 c.23.10.5 83719 2nm0A 253 70.78 1fh9A 312 72.02 c.1.8.3 28913 2q71A 356 73.34 3clmA 352 73.36 1ohtA 215 74.57 d.118.1.1 87036 1owqA 361 74.81 c.1.8.5,d.26.3.1 104041,104042 1vp8A 201 75.04 c.49.1.2 113947 2ax4A 198 75.34 1xm7A 195 78.33 d.159.1.8 115473 2o2xA 218 79.47 1hjxA 362 80.41 c.1.8.5,d.26.3.1 83512,83513 2citA 282 82.19 c.1.8.3 130499 1ny1A 240 82.44 c.6.2.3 86395 2qahA 303 83.56 1v2dA 381 84.52 c.67.1.1 108281 2eaxA 164 84.65 1nal1 297 88.09 1sxrA 183 88.41 d.118.1.1 106101 1wkyA 464 89.21 b.18.1.31,c.1.8.3 120992,120993 1lfaA 187 89.48 c.62.1.1 34122 1fpzA 212 89.65 c.45.1.1 59976 3co4A 312 89.94