# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 9.20e-27 2z3zA 706 1.55e-26 2hu5A 582 2.12e-26 b.69.7.2,c.69.1.33 136763,136764 1h2wA 710 3.74e-24 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 3.85e-24 b.69.7.1,c.69.1.4 81087,81088 1orvA 728 4.00e-24 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 4.80e-24 b.70.3.1,c.69.1.24 115251,115252 1qfmA 710 5.26e-24 b.69.7.1,c.69.1.4 27673,34641 2qm0A 275 7.94e-24 1yr2A 741 1.23e-23 2bklA 695 2.92e-23 2uz0A 263 5.06e-23 1wb4A 297 6.84e-22 c.69.1.2 120827 3c8dA 403 8.66e-22 2jbwA 386 9.36e-22 1l7aA 318 1.79e-21 c.69.1.25 77772 1vlqA 337 2.43e-21 c.69.1.25 108848 1pv1A 299 2.45e-21 c.69.1.34 111639 2gzsA 278 3.11e-21 2i3dA 249 3.40e-21 2b20A 403 4.38e-21 b.1.18.20,c.69.1.2 127685,127686 2r8bA 251 4.59e-21 3b5eA 223 5.36e-21 1f0nA 285 6.11e-21 c.69.1.3 34636 1jjfA 268 1.32e-20 c.69.1.2 66765 2o2gA 223 2.90e-20 1fj2A 232 4.96e-20 c.69.1.14 34720 3bxpA 277 7.61e-20 1ycdA 243 9.70e-20 1jfrA 262 1.29e-19 c.69.1.16 34724 1zi8A 236 1.58e-19 1din 236 2.37e-19 2fx5A 258 2.95e-19 1lzlA 323 4.25e-19 c.69.1.2 78306 2fukA 220 4.61e-19 1jjiA 311 1.56e-18 c.69.1.2 66766 1u4nA 310 3.26e-18 c.69.1.2 113021 1r88A 280 4.93e-18 c.69.1.3 97219 1ufoA 238 5.35e-18 c.69.1.27 99344 1dqzA 280 5.94e-18 c.69.1.3 34638 1thg 544 6.29e-18 1auoA 218 6.75e-18 c.69.1.14 34716 1mpxA 615 8.11e-18 b.18.1.13,c.69.1.21 85041,85042 1ea5A 537 8.17e-18 c.69.1.1 34592 1qe3A 489 1.14e-17 c.69.1.1 34630 1cleA 534 1.32e-17 c.69.1.17 34771 1p0iA 529 2.10e-17 c.69.1.1 93867 1vkhA 273 3.96e-17 c.69.1.32 108662 1llfA 534 4.65e-17 c.69.1.17 78094 2hdwA 367 4.93e-17 1ukcA 522 7.30e-17 c.69.1.17 107911 2pblA 262 1.11e-15 1ju3A 583 2.34e-15 b.18.1.13,c.69.1.21 67300,67301 2bce 581 3.69e-15 2hm7A 310 1.37e-14 1imjA 210 2.35e-14 c.69.1.23 71246 1wm1A 317 2.59e-14 c.69.1.7 109405 1j1iA 296 5.63e-14 c.69.1.10 83977 1hlgA 371 6.17e-14 c.69.1.6 34656 1k8qA 377 7.78e-14 c.69.1.6 72177 1q0rA 298 7.88e-14 c.69.1.28 95508 1jkmA 358 9.56e-14 c.69.1.2 34633 1b6g 310 1.13e-13 1ede 310 1.34e-13 1qtrA 317 1.46e-13 c.69.1.7 34660 1u2eA 289 1.50e-13 1va4A 279 3.80e-13 c.69.1.12 108458 1azwA 313 4.48e-13 c.69.1.7 34658 1mtzA 293 4.61e-13 c.69.1.7 79467 2o7rA 338 4.72e-13 1ehyA 294 4.97e-13 c.69.1.11 34693 1c4xA 285 5.34e-13 c.69.1.10 34684 1lnsA 763 5.94e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1uk8A 282 5.97e-13 c.69.1.10 107907 1bn7A 294 7.78e-13 c.69.1.8 34677 2veoA 441 8.25e-13 1a88A 275 1.10e-12 c.69.1.12 34707 1tqhA 247 1.15e-12 c.69.1.29 107225 1yasA 257 1.22e-12 c.69.1.20 34801 1brt 277 1.40e-12 1broA 277 1.99e-12 c.69.1.12 34700 1qj4A 257 2.91e-12 c.69.1.20 34796 1hkhA 279 3.09e-12 c.69.1.12 90628 1womA 271 3.98e-12 1xqwA 293 4.15e-12 3bdiA 207 4.69e-12 1zd3A 555 4.92e-12 c.108.1.2,c.69.1.11 124930,124931 1m33A 258 5.16e-12 c.69.1.26 78514 1zoiA 276 6.13e-12 2qjwA 176 6.53e-12 2cjpA 328 7.09e-12 2h7cA 542 7.41e-12 c.69.1.1 136207 1xklA 273 8.58e-12 c.69.1.20 115410 2ocgA 254 9.84e-12 2r11A 306 1.31e-11 3c5vA 316 1.44e-11 1tca 317 1.54e-11 1r1dA 247 1.54e-11 c.69.1.29 96813 1cv2A 296 1.72e-11 c.69.1.8 34680 2ogtA 498 1.77e-11 1mj5A 302 2.09e-11 c.69.1.8 91285 2rhwA 283 2.67e-11 2og1A 286 3.03e-11 1b6gA 310 3.35e-11 c.69.1.8 34661 2e3jA 356 3.47e-11 2puhA 286 3.57e-11 1uxoA 192 3.73e-11 c.69.1.31 108121 1a8sA 273 4.06e-11 c.69.1.12 34710 1a8qA 274 5.02e-11 c.69.1.12 34702 3bwxA 285 5.26e-11 1ei9A 279 7.78e-11 c.69.1.13 34713 2pujA 286 7.82e-11 1mnaA 298 9.17e-11 c.69.1.22 79322 2qmqA 286 9.78e-11 2psdA 318 1.19e-10 2b61A 377 1.32e-10 1qo7A 394 1.66e-10 c.69.1.11 34697 1brtA 277 1.69e-10 c.69.1.12 34699 2yysA 286 2.15e-10 1r3dA 264 2.91e-10 c.69.1.35 111680 2qs9A 194 3.34e-10 3bdvA 191 3.59e-10 1gpl 432 4.30e-10 3bf7A 255 4.36e-10 1bu8A 452 4.62e-10 b.12.1.2,c.69.1.19 23647,34795 1pjaA 302 4.63e-10 c.69.1.13 94758 1tcaA 317 4.65e-10 c.69.1.17 34726 1qlwA 328 4.72e-10 c.69.1.15 34722 2qruA 274 5.02e-10 1y37A 304 5.46e-10 2qvbA 297 5.90e-10 2rauA 354 6.86e-10 2o2iA 300 1.07e-09 2pl5A 366 2.95e-09 1ys1X 320 3.88e-09 1thgA 544 4.55e-09 c.69.1.17 34763 3bixA 574 5.89e-09 1cvl 319 6.94e-09 1jmkC 230 7.13e-09 c.69.1.22 71747 2bceA 585 2.64e-08 c.69.1.1 34625 2hfkA 319 4.53e-08 2d80A 318 6.14e-08 1hplA 449 6.21e-08 b.12.1.2,c.69.1.19 23639,34787 1cvlA 319 8.24e-08 c.69.1.18 34786 2q0xA 335 2.98e-07 2cb9A 244 3.98e-07 1ivyA 452 1.07e-06 c.69.1.5 34654 2px6A 316 1.63e-06 2d81A 318 3.33e-06 1ac5A 483 1.15e-05 c.69.1.5 34653 1ispA 181 1.69e-05 c.69.1.18 76778 1ac5 483 1.82e-05 1gt6A 269 5.33e-05 c.69.1.17 76342 1i6wA 181 6.50e-05 c.69.1.18 61859 1tibA 269 0.000105 c.69.1.17 34738 1tib 269 0.000245 1uwcA 261 0.001079 c.69.1.17 100101 3tglA 269 0.001161 c.69.1.17 34733 2z5gA 387 0.001331 2bjhA 260 0.001874 1cexA 214 0.02350 c.69.1.30 31285 2dsnA 387 0.03312 1whtA 256 0.05236 c.69.1.5 34646 1cex 214 0.08783 1whsA 255 0.1027 c.69.1.5 34649 1thtA 305 0.1463 c.69.1.13 34711 2oryA 346 0.4076 1jz8A 1023 1.192 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1whtB 153 1.330 1g66A 207 1.601 c.69.1.30 31329 2csuA 457 1.729 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1ku0A 388 1.747 c.69.1.18 72994 1whsB 153 2.240 1g0cA 364 2.405 c.1.8.3 60165 2czqA 205 2.467 2bv9A 290 5.143 c.1.8.3 129242 1k32A 1045 5.244 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2cksA 306 6.083 1qh8A 478 6.181 c.92.2.3 35633 1vflA 356 7.773 c.1.9.1 120041 2v9cA 215 8.751 1db3A 372 9.175 c.2.1.2 29813 2bfgA 503 9.399 b.71.1.2,c.1.8.3 128423,128424 1m22A 503 9.849 c.117.1.1 78464 1to6A 371 9.860 c.141.1.1 107170 1yt8A 539 11.47 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1w85A 368 12.96 c.36.1.11 114335 2c2nA 339 15.81 1yb0A 159 17.55 d.118.1.1 122865 2ct8A 497 17.94 1qnrA 344 18.31 c.1.8.3 28834 2qtwB 546 19.79 1gudA 288 21.31 c.93.1.1 83326 2ob3A 330 21.61 1ri5A 298 21.98 c.66.1.34 97502 1ve5A 311 22.22 c.79.1.1 120013 2q4zA 312 25.98 1itxA 419 28.97 c.1.8.5,d.26.3.1 71425,71426 1eceA 358 29.14 c.1.8.3 28813 2jg2A 422 29.28 1o8uA 257 29.72 c.14.1.3 81194 1ajsA 412 29.73 c.67.1.1 34276 2e7zA 727 30.66 1mjnA 179 30.68 c.62.1.1 79210 3ctpA 330 31.07 1szoA 257 32.26 c.14.1.3 106164 2gkoA 309 32.35 1rxyA 253 33.11 c.56.2.1 98065 1e9lA 377 33.13 c.1.8.5,d.26.3.1 59395,59396 1eiwA 111 34.42 c.23.3.1 31130 2dri 271 35.09 1zowA 313 37.14 1xpkC 388 37.30 c.95.1.2,c.95.1.2 115747,115748 1vf8A 377 37.90 c.1.8.5,d.26.3.1 120029,120030 1qe5A 266 39.41 c.56.2.1 33784 2iv2X 715 39.82 b.52.2.2,c.81.1.1 137714,137715 1tyfA 193 40.20 c.14.1.1 30885 1eqcA 394 41.19 c.1.8.3 28811 1edg 380 41.51 1p5jA 372 41.73 c.79.1.1 104067 1vmkA 277 42.74 c.56.2.1 113680 1e3jA 352 42.84 b.35.1.2,c.2.1.1 24765,29781 2osxA 481 43.10 2ffiA 288 43.70 c.1.9.15 133385 2z2uA 311 44.59 2cuyA 305 45.15 2q3bA 313 45.42 2d51A 406 45.65 1t2aA 375 46.22 c.2.1.2 99078 3c8uA 208 46.37 2df8A 325 47.33 1ewkA 490 48.27 c.93.1.1 35712 2q09A 416 48.40 1g2oA 268 48.67 c.56.2.1 60228 1fpzA 212 48.82 c.45.1.1 59976 1owqA 361 49.02 c.1.8.5,d.26.3.1 104041,104042 1l1eA 287 49.25 c.66.1.18 73454 2nm0A 253 50.71 2fk8A 318 50.95 c.66.1.18 133648 1hjsA 332 51.40 c.1.8.3 83492 3clwA 507 51.98 2d4wA 504 52.23 1lfaA 187 52.32 c.62.1.1 34122 2dx6A 159 52.44 1f0kA 364 52.93 c.87.1.2 35465 1o58A 303 53.13 c.79.1.1 92491 1rh9A 373 53.38 c.1.8.3 118773 1pswA 348 53.62 c.87.1.7 88287 1ryiA 382 53.63 c.3.1.2,d.16.1.3 118813,118814 1f74A 293 53.83 c.1.10.1 29079 2f6kA 307 54.03 c.1.9.15 133047 1tjyA 316 54.16 c.93.1.1 107062 1rwtA 232 54.29 f.43.1.1 97992 2ppyA 265 55.79 2i2wA 212 57.09 1vhwA 253 57.50 c.56.2.1 100706 2ragA 417 57.88 1q0qA 406 58.32 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1vp8A 201 58.68 c.49.1.2 113947 1gu7A 364 60.09 b.35.1.2,c.2.1.1 83321,83322 1w1iE 357 60.09 c.1.9.1 109051 2p4zA 284 61.36 1tk9A 188 61.43 c.80.1.3 107082 1ceo 343 61.80 1hkkA 364 63.37 c.1.8.5,d.26.3.1 90634,90635 1gewA 356 63.90 c.67.1.1 60470 1z15A 344 64.35 1x6vA 630 64.48 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1usgA 346 65.22 c.93.1.1 99864 1h1nA 305 65.71 c.1.8.3 70855 1dmgA 225 66.19 c.22.1.1 31036 2h1yA 321 66.38 2q62A 247 66.55 1umdA 367 66.65 c.36.1.11 99599 1avaA 403 66.92 b.71.1.1,c.1.8.1 27797,28784 1n7hA 381 67.91 c.2.1.2 80250 2pfuA 99 68.27 2ozlA 365 68.96 2hpvA 208 70.14 2c82A 413 70.32 1uf3A 228 70.40 d.159.1.6 99317 2pqmA 343 70.81 1fcjA 322 71.22 c.79.1.1 35289 2v3gA 283 71.47 2pwaA 279 71.81 c.41.1.1 139762 1j0aA 325 72.61 c.79.1.1 83871 1xyzA 347 74.75 c.1.8.3 28804 2hxvA 360 75.20 c.71.1.2,c.97.1.2 136859,136860 1wb0A 445 76.41 c.1.8.5,d.26.3.1 120825,120826 2h00A 254 77.48 c.66.1.54 135925 2jfgA 445 77.53 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1oj4A 283 78.51 d.14.1.5,d.58.26.5 93083,93084 2liv 344 79.90 1gciA 269 80.41 c.41.1.1 32503 1fh9A 312 80.73 c.1.8.3 28913 2p4eA 692 80.74 1ox0A 430 82.51 c.95.1.1,c.95.1.1 87495,87496 1jaeA 471 83.08 b.71.1.1,c.1.8.1 27773,28760 2yvaA 196 83.25 8abp 306 83.36 2ixtA 310 84.75 2eavA 165 85.13 2bs9A 503 85.73 b.71.1.2,c.1.8.3 129062,129063 1v0wA 506 85.94 d.136.1.2,d.136.1.2 108220,108221 2jfkA 433 86.02 1yn9A 169 86.19 2jh3A 474 87.02 1orrA 347 87.33 c.2.1.2 93460 1z41A 338 87.49 c.1.4.1 124421 2c1xA 456 88.32 1tx4B 178 88.33 c.37.1.8 32045 1z7yA 322 88.90 c.79.1.1 124679