# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hu5A 582 9.27e-23 b.69.7.2,c.69.1.33 136763,136764 1xfdA 723 1.53e-21 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 1.61e-21 2z3zA 706 3.65e-21 2d5lA 706 4.38e-21 1orvA 728 8.15e-21 b.70.3.1,c.69.1.24 87354,87355 1h2wA 710 1.05e-20 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 1.28e-20 b.69.7.1,c.69.1.4 27673,34641 2uz0A 263 1.36e-20 1yr2A 741 1.49e-20 2bklA 695 3.86e-20 1wb4A 297 8.23e-20 c.69.1.2 120827 3c8dA 403 9.83e-20 2jbwA 386 1.45e-19 1o6gA 710 1.74e-19 b.69.7.1,c.69.1.4 81087,81088 1vlqA 337 3.77e-19 c.69.1.25 108848 1pv1A 299 4.15e-19 c.69.1.34 111639 2r8bA 251 4.25e-19 3b5eA 223 5.04e-19 2i3dA 249 5.46e-19 2gzsA 278 5.74e-19 1jjfA 268 8.71e-19 c.69.1.2 66765 1l7aA 318 8.86e-19 c.69.1.25 77772 1f0nA 285 9.86e-19 c.69.1.3 34636 2b20A 403 1.41e-18 b.1.18.20,c.69.1.2 127685,127686 2o2gA 223 5.25e-18 1fj2A 232 5.79e-18 c.69.1.14 34720 1ycdA 243 7.59e-18 3bxpA 277 1.03e-17 1zi8A 236 1.96e-17 2fx5A 258 2.67e-17 1din 236 2.86e-17 1jfrA 262 4.50e-17 c.69.1.16 34724 2fukA 220 5.54e-17 1lzlA 323 5.54e-17 c.69.1.2 78306 1mpxA 615 1.19e-16 b.18.1.13,c.69.1.21 85041,85042 1auoA 218 1.70e-16 c.69.1.14 34716 1jjiA 311 2.16e-16 c.69.1.2 66766 1ea5A 537 2.56e-16 c.69.1.1 34592 1ufoA 238 3.87e-16 c.69.1.27 99344 1r88A 280 4.52e-16 c.69.1.3 97219 1dqzA 280 4.87e-16 c.69.1.3 34638 1u4nA 310 5.82e-16 c.69.1.2 113021 1p0iA 529 8.04e-16 c.69.1.1 93867 1cleA 534 8.57e-16 c.69.1.17 34771 1vkhA 273 1.01e-15 c.69.1.32 108662 1ukcA 522 1.34e-15 c.69.1.17 107911 2hdwA 367 1.80e-15 1thg 544 2.64e-15 2bce 581 3.00e-15 1qe3A 489 1.26e-14 c.69.1.1 34630 1llfA 534 2.02e-14 c.69.1.17 78094 2pblA 262 4.22e-14 1ju3A 583 4.56e-14 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 4.09e-13 1k8qA 377 1.02e-12 c.69.1.6 72177 1imjA 210 1.04e-12 c.69.1.23 71246 1wm1A 317 1.16e-12 c.69.1.7 109405 1qtrA 317 1.44e-12 c.69.1.7 34660 1b6g 310 2.64e-12 1q0rA 298 2.68e-12 c.69.1.28 95508 1u2eA 289 2.79e-12 1jkmA 358 3.02e-12 c.69.1.2 34633 1hlgA 371 3.46e-12 c.69.1.6 34656 1ede 310 4.02e-12 1c4xA 285 5.45e-12 c.69.1.10 34684 2o7rA 338 7.37e-12 1j1iA 296 7.75e-12 c.69.1.10 83977 1a88A 275 1.14e-11 c.69.1.12 34707 1va4A 279 1.40e-11 c.69.1.12 108458 1uk8A 282 1.43e-11 c.69.1.10 107907 1azwA 313 1.69e-11 c.69.1.7 34658 2h7cA 542 1.84e-11 c.69.1.1 136207 1womA 271 2.53e-11 1tca 317 3.23e-11 1brt 277 3.66e-11 1tqhA 247 3.76e-11 c.69.1.29 107225 1bn7A 294 4.32e-11 c.69.1.8 34677 1yasA 257 5.39e-11 c.69.1.20 34801 1ehyA 294 7.10e-11 c.69.1.11 34693 2veoA 441 8.26e-11 1hkhA 279 8.84e-11 c.69.1.12 90628 3bdiA 207 9.76e-11 2r11A 306 1.10e-10 1broA 277 1.12e-10 c.69.1.12 34700 1mtzA 293 1.27e-10 c.69.1.7 79467 2qjwA 176 1.31e-10 2ocgA 254 1.35e-10 2cjpA 328 1.46e-10 1zoiA 276 1.47e-10 1m33A 258 1.49e-10 c.69.1.26 78514 3c5vA 316 1.56e-10 1xklA 273 2.06e-10 c.69.1.20 115410 2ogtA 498 2.11e-10 1r1dA 247 3.67e-10 c.69.1.29 96813 1a8sA 273 3.69e-10 c.69.1.12 34710 1xqwA 293 3.74e-10 1a8qA 274 4.71e-10 c.69.1.12 34702 3bwxA 285 4.72e-10 1b6gA 310 5.18e-10 c.69.1.8 34661 1uxoA 192 5.90e-10 c.69.1.31 108121 2psdA 318 6.25e-10 1qj4A 257 6.47e-10 c.69.1.20 34796 1mj5A 302 7.80e-10 c.69.1.8 91285 2pujA 286 8.00e-10 1tcaA 317 8.16e-10 c.69.1.17 34726 2qmqA 286 8.79e-10 2og1A 286 1.01e-09 1cv2A 296 1.05e-09 c.69.1.8 34680 2rhwA 283 1.49e-09 1brtA 277 1.55e-09 c.69.1.12 34699 1ei9A 279 1.57e-09 c.69.1.13 34713 2puhA 286 1.67e-09 1zd3A 555 1.86e-09 c.108.1.2,c.69.1.11 124930,124931 2e3jA 356 2.27e-09 1r3dA 264 2.70e-09 c.69.1.35 111680 2qruA 274 2.76e-09 1lnsA 763 3.31e-09 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3bf7A 255 3.46e-09 2b61A 377 3.65e-09 3bdvA 191 4.02e-09 2yysA 286 4.09e-09 1mnaA 298 4.58e-09 c.69.1.22 79322 1bu8A 452 4.76e-09 b.12.1.2,c.69.1.19 23647,34795 1pjaA 302 4.87e-09 c.69.1.13 94758 2qs9A 194 5.98e-09 2qvbA 297 6.54e-09 1gpl 432 7.31e-09 1qo7A 394 7.92e-09 c.69.1.11 34697 1qlwA 328 9.48e-09 c.69.1.15 34722 1y37A 304 1.06e-08 2o2iA 300 1.20e-08 2rauA 354 1.90e-08 2pl5A 366 3.89e-08 3bixA 574 4.46e-08 1jmkC 230 4.85e-08 c.69.1.22 71747 1ys1X 320 5.97e-08 2bceA 585 7.91e-08 c.69.1.1 34625 1cvl 319 7.96e-08 1thgA 544 1.42e-07 c.69.1.17 34763 2hfkA 319 3.16e-07 1ivyA 452 4.95e-07 c.69.1.5 34654 1hplA 449 5.69e-07 b.12.1.2,c.69.1.19 23639,34787 1cvlA 319 7.79e-07 c.69.1.18 34786 2cb9A 244 1.31e-06 2q0xA 335 2.50e-06 2d80A 318 8.49e-06 2px6A 316 1.45e-05 1ac5 483 2.48e-05 1ac5A 483 8.29e-05 c.69.1.5 34653 1ispA 181 8.98e-05 c.69.1.18 76778 1i6wA 181 0.000181 c.69.1.18 61859 1gt6A 269 0.000425 c.69.1.17 76342 2d81A 318 0.001760 1tibA 269 0.002168 c.69.1.17 34738 3tglA 269 0.006006 c.69.1.17 34733 1uwcA 261 0.006769 c.69.1.17 100101 1tib 269 0.008072 2z5gA 387 0.009136 2bjhA 260 0.009684 1cexA 214 0.05813 c.69.1.30 31285 1whsA 255 0.06757 c.69.1.5 34649 1thtA 305 0.08793 c.69.1.13 34711 2dsnA 387 0.1299 1cex 214 0.1453 1whtA 256 0.1736 c.69.1.5 34646 2oryA 346 0.2462 1ku0A 388 1.189 c.69.1.18 72994 1g66A 207 2.806 c.69.1.30 31329 2czqA 205 3.075 1g0cA 364 3.702 c.1.8.3 60165 1whsB 153 3.812 1whtB 153 4.400 2csuA 457 4.716 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1ve5A 311 6.002 c.79.1.1 120013 1m22A 503 7.314 c.117.1.1 78464 1vflA 356 7.526 c.1.9.1 120041 1qh8A 478 7.727 c.92.2.3 35633 2bmaA 470 8.331 2napA 723 9.138 b.52.2.2,c.81.1.1 26926,35334 1hkkA 364 9.301 c.1.8.5,d.26.3.1 90634,90635 1t2aA 375 10.23 c.2.1.2 99078 1eu1A 780 10.39 b.52.2.2,c.81.1.1 26903,35311 1hzdA 272 12.24 c.14.1.3 65969 2v9cA 215 12.74 1eceA 358 12.79 c.1.8.3 28813 1gtmA 419 13.29 c.2.1.7,c.58.1.1 30223,33871 1yt8A 539 14.11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1to6A 371 14.94 c.141.1.1 107170 1uwvA 433 15.85 b.40.4.12,c.66.1.40 100128,100129 1zowA 313 15.94 1b3bA 415 16.65 c.2.1.7,c.58.1.1 30244,33892 2gkoA 309 17.46 2pqmA 343 18.88 2bv9A 290 19.75 c.1.8.3 129242 2qtwB 546 21.22 1owqA 361 21.26 c.1.8.5,d.26.3.1 104041,104042 2jfgA 445 21.76 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1y5iA 1246 23.36 b.52.2.2,c.81.1.1 122639,122640 2ct8A 497 24.51 1pvdA 537 26.02 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1itxA 419 26.04 c.1.8.5,d.26.3.1 71425,71426 1wb0A 445 26.17 c.1.8.5,d.26.3.1 120825,120826 2p4eA 692 26.50 2c2nA 339 28.75 1xpkC 388 28.89 c.95.1.2,c.95.1.2 115747,115748 2i2wA 212 29.01 2cksA 306 29.10 2bs9A 503 29.41 b.71.1.2,c.1.8.3 129062,129063 1lfaA 187 29.45 c.62.1.1 34122 1e9lA 377 29.54 c.1.8.5,d.26.3.1 59395,59396 1mjnA 179 29.64 c.62.1.1 79210 1tyfA 193 29.68 c.14.1.1 30885 1rh9A 373 29.75 c.1.8.3 118773 1qnrA 344 29.93 c.1.8.3 28834 1yb0A 159 30.29 d.118.1.1 122865 2ez9A 603 31.59 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2c1xA 456 32.24 1dmgA 225 33.40 c.22.1.1 31036 2djiA 590 34.02 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2bhuA 602 34.27 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2z2uA 311 35.12 1pamA 686 35.17 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1qw9A 502 35.35 b.71.1.2,c.1.8.3 96466,96467 2jg2A 422 35.85 1e8cA 498 36.84 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2b8nA 429 37.71 c.118.1.1 128093 2hpvA 208 38.47 1gudA 288 39.13 c.93.1.1 83326 2ppyA 265 39.58 2or4A 709 40.91 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2liv 344 41.19 1jakA 512 41.33 c.1.8.6,d.92.2.1 66472,66473 2ixtA 310 41.39 2nxwA 565 41.85 1x6vA 630 41.93 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2df8A 325 42.17 2nm0A 253 42.51 2iv2X 715 42.78 b.52.2.2,c.81.1.1 137714,137715 1jndA 420 43.08 c.1.8.5,d.26.3.1 71757,71758 1o8uA 257 43.11 c.14.1.3 81194 1szoA 257 43.51 c.14.1.3 106164 2dri 271 44.57 1d3gA 367 45.61 c.1.4.1 28600 1gg4A 452 46.51 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1pswA 348 47.01 c.87.1.7 88287 2pa6A 427 47.28 1hjxA 362 48.07 c.1.8.5,d.26.3.1 83512,83513 1eiwA 111 48.99 c.23.3.1 31130 1gu7A 364 49.63 b.35.1.2,c.2.1.1 83321,83322 2h1yA 321 49.64 4xis 387 49.75 1w1iE 357 51.17 c.1.9.1 109051 1ryiA 382 51.53 c.3.1.2,d.16.1.3 118813,118814 1dciA 275 52.16 c.14.1.3 30918 1z15A 344 53.79 2gouA 365 53.90 2o55A 258 54.52 1v3hA 495 55.22 c.1.8.1 108303 1vmkA 277 55.27 c.56.2.1 113680 1rwtA 232 55.83 f.43.1.1 97992 1edg 380 56.15 1z41A 338 56.51 c.1.4.1 124421 1h3gA 601 57.29 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2pq6A 482 57.44 2i8aA 252 58.66 1w85A 368 58.82 c.36.1.11 114335 1qydA 313 59.71 c.2.1.2 96583 2j69A 695 59.87 1p5jA 372 60.00 c.79.1.1 104067 1rxyA 253 61.55 c.56.2.1 98065 1qe5A 266 62.77 c.56.2.1 33784 1ja1A 622 63.07 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2hrdA 253 63.11 1gkpA 458 63.26 b.92.1.3,c.1.9.6 70231,70232 1ceo 343 63.91 1zu4A 320 64.30 2ob3A 330 64.44 1fpzA 212 64.57 c.45.1.1 59976 2eaxA 164 64.95 1b26A 416 65.16 c.2.1.7,c.58.1.1 30232,33880 2hzbA 333 65.22 c.143.1.1 136911 3ctpA 330 68.25 1vhwA 253 68.73 c.56.2.1 100706 2vbaA 406 68.91 2d4wA 504 70.63 2b0mA 393 71.93 c.1.4.1 127644 1wdpA 495 72.23 c.1.8.1 120907 1oycA 400 72.27 c.1.4.1 28603 1oy3D 282 72.82 d.211.1.1 87554 1usgA 346 72.88 c.93.1.1 99864 1ctn 540 75.20 2du2A 374 75.22 1ajsA 412 75.40 c.67.1.1 34276 1hjsA 332 75.46 c.1.8.3 83492 2uz1A 563 75.52 2fk8A 318 75.59 c.66.1.18 133648 1db3A 372 75.77 c.2.1.2 29813 1l1eA 287 76.38 c.66.1.18 73454 8abp 306 76.84 1ri5A 298 77.24 c.66.1.34 97502 1fh9A 312 77.29 c.1.8.3 28913 1g2oA 268 78.35 c.56.2.1 60228 2hoxA 427 78.37 c.67.1.1 136644 2ivfA 976 80.51 2nu8B 388 80.55 2bjfA 329 81.24 1b8gA 429 81.28 c.67.1.4 34499 2q62A 247 84.60 1k6xA 352 85.77 c.2.1.2 68238 1hl2A 297 86.59 c.1.10.1 83581 1j0aA 325 86.93 c.79.1.1 83871 2q3bA 313 87.08 1p0kA 349 87.49 c.1.4.1 87648 2c0hA 353 88.46 c.1.8.3 129594 2gruA 368 88.68 1muwA 386 88.97 c.1.15.3 79495 2b4gA 317 89.00 c.1.4.1 127829