# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.14e-26 2z3zA 706 2.59e-26 2hu5A 582 4.80e-26 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 5.44e-24 b.70.3.1,c.69.1.24 87354,87355 1h2wA 710 6.99e-24 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 7.23e-24 b.70.3.1,c.69.1.24 115251,115252 1o6gA 710 7.55e-24 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 1.18e-23 b.69.7.1,c.69.1.4 27673,34641 2qm0A 275 1.55e-23 1yr2A 741 1.70e-23 2bklA 695 5.82e-23 2uz0A 263 1.09e-22 1wb4A 297 9.39e-22 c.69.1.2 120827 2jbwA 386 1.17e-21 3c8dA 403 1.62e-21 1l7aA 318 2.29e-21 c.69.1.25 77772 1vlqA 337 3.88e-21 c.69.1.25 108848 2gzsA 278 4.83e-21 2b20A 403 5.34e-21 b.1.18.20,c.69.1.2 127685,127686 2r8bA 251 5.35e-21 2i3dA 249 5.73e-21 1pv1A 299 6.08e-21 c.69.1.34 111639 3b5eA 223 7.19e-21 1f0nA 285 1.44e-20 c.69.1.3 34636 1jjfA 268 3.15e-20 c.69.1.2 66765 2o2gA 223 4.18e-20 1fj2A 232 5.60e-20 c.69.1.14 34720 3bxpA 277 9.86e-20 1ycdA 243 1.08e-19 1jfrA 262 1.36e-19 c.69.1.16 34724 1zi8A 236 1.79e-19 2fx5A 258 2.55e-19 1din 236 2.77e-19 1lzlA 323 6.15e-19 c.69.1.2 78306 2fukA 220 6.70e-19 1jjiA 311 2.70e-18 c.69.1.2 66766 1ufoA 238 3.63e-18 c.69.1.27 99344 1u4nA 310 5.08e-18 c.69.1.2 113021 1thg 544 6.39e-18 1qe3A 489 6.50e-18 c.69.1.1 34630 1auoA 218 8.64e-18 c.69.1.14 34716 1ea5A 537 1.01e-17 c.69.1.1 34592 1mpxA 615 1.08e-17 b.18.1.13,c.69.1.21 85041,85042 1r88A 280 1.38e-17 c.69.1.3 97219 1dqzA 280 1.48e-17 c.69.1.3 34638 1cleA 534 1.54e-17 c.69.1.17 34771 1p0iA 529 1.91e-17 c.69.1.1 93867 1llfA 534 4.72e-17 c.69.1.17 78094 2hdwA 367 6.31e-17 1ukcA 522 6.73e-17 c.69.1.17 107911 1vkhA 273 6.94e-17 c.69.1.32 108662 2pblA 262 8.35e-16 2bce 581 2.35e-15 1ju3A 583 3.20e-15 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 1.52e-14 1imjA 210 2.89e-14 c.69.1.23 71246 1wm1A 317 3.70e-14 c.69.1.7 109405 1j1iA 296 6.95e-14 c.69.1.10 83977 1hlgA 371 7.63e-14 c.69.1.6 34656 1q0rA 298 1.01e-13 c.69.1.28 95508 1jkmA 358 1.11e-13 c.69.1.2 34633 1k8qA 377 1.21e-13 c.69.1.6 72177 1u2eA 289 1.38e-13 1b6g 310 1.45e-13 1qtrA 317 1.60e-13 c.69.1.7 34660 1ede 310 1.71e-13 1va4A 279 3.98e-13 c.69.1.12 108458 2o7rA 338 4.38e-13 1ehyA 294 4.70e-13 c.69.1.11 34693 1c4xA 285 5.31e-13 c.69.1.10 34684 1azwA 313 5.91e-13 c.69.1.7 34658 1uk8A 282 6.32e-13 c.69.1.10 107907 1mtzA 293 6.64e-13 c.69.1.7 79467 1bn7A 294 8.34e-13 c.69.1.8 34677 1lnsA 763 8.92e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2veoA 441 1.14e-12 1a88A 275 1.19e-12 c.69.1.12 34707 1tqhA 247 1.19e-12 c.69.1.29 107225 1yasA 257 1.46e-12 c.69.1.20 34801 1brt 277 1.58e-12 1broA 277 2.09e-12 c.69.1.12 34700 1hkhA 279 3.16e-12 c.69.1.12 90628 1qj4A 257 3.99e-12 c.69.1.20 34796 1xqwA 293 4.75e-12 1womA 271 5.12e-12 3bdiA 207 5.22e-12 2h7cA 542 5.35e-12 c.69.1.1 136207 2qjwA 176 5.54e-12 1m33A 258 5.66e-12 c.69.1.26 78514 1zoiA 276 6.72e-12 1zd3A 555 7.05e-12 c.108.1.2,c.69.1.11 124930,124931 2cjpA 328 7.79e-12 2ogtA 498 8.55e-12 1xklA 273 1.03e-11 c.69.1.20 115410 1tca 317 1.06e-11 2ocgA 254 1.23e-11 2r11A 306 1.39e-11 3c5vA 316 1.52e-11 1r1dA 247 1.57e-11 c.69.1.29 96813 1cv2A 296 2.24e-11 c.69.1.8 34680 1mj5A 302 2.50e-11 c.69.1.8 91285 2rhwA 283 2.91e-11 2og1A 286 3.11e-11 1uxoA 192 3.14e-11 c.69.1.31 108121 2puhA 286 3.36e-11 2e3jA 356 3.64e-11 1b6gA 310 3.83e-11 c.69.1.8 34661 1a8sA 273 4.17e-11 c.69.1.12 34710 1a8qA 274 5.41e-11 c.69.1.12 34702 3bwxA 285 5.55e-11 1ei9A 279 5.55e-11 c.69.1.13 34713 1mnaA 298 7.05e-11 c.69.1.22 79322 2pujA 286 7.97e-11 2psdA 318 1.23e-10 2qmqA 286 1.29e-10 2b61A 377 1.49e-10 1qo7A 394 1.54e-10 c.69.1.11 34697 1brtA 277 1.76e-10 c.69.1.12 34699 2yysA 286 2.49e-10 1tcaA 317 2.52e-10 c.69.1.17 34726 1gpl 432 2.81e-10 1r3dA 264 2.89e-10 c.69.1.35 111680 2qruA 274 2.94e-10 1pjaA 302 3.33e-10 c.69.1.13 94758 3bdvA 191 3.41e-10 1bu8A 452 3.92e-10 b.12.1.2,c.69.1.19 23647,34795 2qs9A 194 4.15e-10 3bf7A 255 4.24e-10 1y37A 304 5.39e-10 2qvbA 297 6.37e-10 2rauA 354 6.79e-10 1qlwA 328 9.45e-10 c.69.1.15 34722 2o2iA 300 1.14e-09 1thgA 544 3.11e-09 c.69.1.17 34763 1ys1X 320 3.35e-09 2pl5A 366 3.52e-09 1cvl 319 4.75e-09 3bixA 574 5.31e-09 1jmkC 230 8.36e-09 c.69.1.22 71747 2bceA 585 1.90e-08 c.69.1.1 34625 2hfkA 319 2.86e-08 1hplA 449 4.41e-08 b.12.1.2,c.69.1.19 23639,34787 1cvlA 319 5.47e-08 c.69.1.18 34786 2d80A 318 5.74e-08 2q0xA 335 2.31e-07 2cb9A 244 4.50e-07 1ivyA 452 6.32e-07 c.69.1.5 34654 2px6A 316 1.19e-06 2d81A 318 3.31e-06 1ac5A 483 4.51e-06 c.69.1.5 34653 1ispA 181 9.54e-06 c.69.1.18 76778 1ac5 483 1.15e-05 1gt6A 269 3.31e-05 c.69.1.17 76342 1i6wA 181 4.40e-05 c.69.1.18 61859 1tibA 269 0.000157 c.69.1.17 34738 1tib 269 0.000241 2z5gA 387 0.000694 1uwcA 261 0.000706 c.69.1.17 100101 3tglA 269 0.001279 c.69.1.17 34733 2bjhA 260 0.001841 1cexA 214 0.01499 c.69.1.30 31285 2dsnA 387 0.02135 1whtA 256 0.03676 c.69.1.5 34646 1cex 214 0.05288 1whsA 255 0.06871 c.69.1.5 34649 1thtA 305 0.1057 c.69.1.13 34711 2oryA 346 0.3087 1ku0A 388 0.8131 c.69.1.18 72994 1g66A 207 0.9061 c.69.1.30 31329 1whtB 153 1.263 1jz8A 1023 1.796 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1whsB 153 1.807 2czqA 205 2.200 2csuA 457 2.205 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1g0cA 364 3.519 c.1.8.3 60165 2bv9A 290 4.256 c.1.8.3 129242 2v9cA 215 4.808 1vflA 356 5.436 c.1.9.1 120041 1qh8A 478 7.197 c.92.2.3 35633 1db3A 372 7.400 c.2.1.2 29813 1m22A 503 9.535 c.117.1.1 78464 2cksA 306 10.38 2bfgA 503 10.69 b.71.1.2,c.1.8.3 128423,128424 1to6A 371 11.11 c.141.1.1 107170 1yb0A 159 11.90 d.118.1.1 122865 1yt8A 539 13.18 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2c2nA 339 16.90 2ob3A 330 17.71 1ve5A 311 17.95 c.79.1.1 120013 1qnrA 344 18.20 c.1.8.3 28834 1k32A 1045 19.26 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2qtwB 546 20.21 1w85A 368 21.50 c.36.1.11 114335 1itxA 419 23.89 c.1.8.5,d.26.3.1 71425,71426 2ct8A 497 24.54 3c8uA 208 25.37 1ryiA 382 27.03 c.3.1.2,d.16.1.3 118813,118814 1o8uA 257 30.08 c.14.1.3 81194 1eiwA 111 30.34 c.23.3.1 31130 1ri5A 298 31.29 c.66.1.34 97502 1eceA 358 31.75 c.1.8.3 28813 1szoA 257 32.05 c.14.1.3 106164 1e3jA 352 32.17 b.35.1.2,c.2.1.1 24765,29781 1rxyA 253 32.18 c.56.2.1 98065 3ctpA 330 32.45 1mjnA 179 32.85 c.62.1.1 79210 1tyfA 193 33.68 c.14.1.1 30885 2nm0A 253 34.75 2q4zA 312 36.93 1pswA 348 37.23 c.87.1.7 88287 1e9lA 377 37.90 c.1.8.5,d.26.3.1 59395,59396 2hpvA 208 37.96 2e7zA 727 38.79 1zowA 313 39.11 1vf8A 377 39.55 c.1.8.5,d.26.3.1 120029,120030 1ajsA 412 39.74 c.67.1.1 34276 1t2aA 375 40.81 c.2.1.2 99078 2gkoA 309 40.91 1p5jA 372 41.46 c.79.1.1 104067 2z2uA 311 41.82 1rwtA 232 42.24 f.43.1.1 97992 2df8A 325 42.79 1gudA 288 43.35 c.93.1.1 83326 1gu7A 364 43.54 b.35.1.2,c.2.1.1 83321,83322 3clwA 507 43.74 2d51A 406 43.97 2iv2X 715 44.03 b.52.2.2,c.81.1.1 137714,137715 1n7hA 381 44.07 c.2.1.2 80250 1xpkC 388 44.84 c.95.1.2,c.95.1.2 115747,115748 1ewkA 490 45.07 c.93.1.1 35712 2q3bA 313 45.10 1x6vA 630 45.35 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2v3gA 283 46.48 1hjsA 332 46.57 c.1.8.3 83492 1dmgA 225 47.00 c.22.1.1 31036 2dri 271 47.29 1fpzA 212 47.45 c.45.1.1 59976 1lfaA 187 47.87 c.62.1.1 34122 2p4eA 692 47.93 2f6kA 307 48.25 c.1.9.15 133047 1qe5A 266 48.57 c.56.2.1 33784 1jaeA 471 49.18 b.71.1.1,c.1.8.1 27773,28760 1eqcA 394 49.40 c.1.8.3 28811 2pqmA 343 50.05 2q62A 247 50.95 2q09A 416 51.73 1vp8A 201 52.20 c.49.1.2 113947 2i2wA 212 52.37 2dx6A 159 53.26 1gciA 269 53.83 c.41.1.1 32503 2osxA 481 53.90 1tk9A 188 54.45 c.80.1.3 107082 1q0qA 406 54.92 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1w1iE 357 55.24 c.1.9.1 109051 2jg2A 422 55.35 1edg 380 55.40 2d4wA 504 56.92 2ffiA 288 56.96 c.1.9.15 133385 1vmkA 277 58.53 c.56.2.1 113680 1ceo 343 58.89 1o58A 303 59.19 c.79.1.1 92491 2eaxA 164 59.62 1owqA 361 60.05 c.1.8.5,d.26.3.1 104041,104042 2jh3A 474 60.22 1rh9A 373 61.05 c.1.8.3 118773 2h1yA 321 61.26 1h1nA 305 61.43 c.1.8.3 70855 1qw9A 502 62.22 b.71.1.2,c.1.8.3 96466,96467 2c82A 413 62.22 1v0wA 506 63.18 d.136.1.2,d.136.1.2 108220,108221 1avaA 403 64.85 b.71.1.1,c.1.8.1 27797,28784 2eavA 165 65.12 1kbjA 412 65.50 c.1.4.1 72280 1z41A 338 66.31 c.1.4.1 124421 2ppyA 265 68.07 2cuyA 305 68.20 1g2oA 268 69.58 c.56.2.1 60228 1k6xA 352 69.60 c.2.1.2 68238 2ozlA 365 69.63 1hkkA 364 70.19 c.1.8.5,d.26.3.1 90634,90635 1bdbA 277 70.27 c.2.1.2 29874 1jvsA 400 70.32 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2gt1A 326 70.39 2ragA 417 70.64 2p4zA 284 71.06 1z15A 344 71.23 2fk8A 318 73.66 c.66.1.18 133648 1l1eA 287 73.90 c.66.1.18 73454 1usgA 346 73.93 c.93.1.1 99864 2jfgA 445 76.11 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1z7yA 322 76.33 c.79.1.1 124679 1f0kA 364 76.65 c.87.1.2 35465 3cdxA 354 77.85 1orrA 347 78.10 c.2.1.2 93460 1vhwA 253 78.88 c.56.2.1 100706 1j0aA 325 79.26 c.79.1.1 83871 2p3rA 510 79.54 c.55.1.4,c.55.1.4 139471,139472 2pfuA 99 79.67 2yvaA 196 80.05 2liv 344 80.41 2du2A 374 80.84 2pwaA 279 81.03 c.41.1.1 139762 1wb0A 445 81.13 c.1.8.5,d.26.3.1 120825,120826 2grjA 192 82.28 2ax4A 198 83.71 1qfxA 460 83.92 c.60.1.2 33994 1xyzA 347 84.86 c.1.8.3 28804 1gewA 356 85.68 c.67.1.1 60470 1uf3A 228 85.80 d.159.1.6 99317 1oheA 348 87.36 c.45.1.1,c.45.1.1 87013,87014 2f2lX 167 87.57 d.118.1.1 132844 1hzdA 272 87.72 c.14.1.3 65969 2ixtA 310 87.91 2ppwA 216 89.48