# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hu5A 582 1.79e-26 b.69.7.2,c.69.1.33 136763,136764 2d5lA 706 2.41e-26 2z3zA 706 3.99e-26 2qm0A 275 4.65e-24 1orvA 728 6.33e-24 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 8.14e-24 b.70.3.1,c.69.1.24 115251,115252 1qfmA 710 9.65e-24 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 1.12e-23 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 1.89e-23 b.69.7.1,c.69.1.4 81087,81088 1yr2A 741 2.26e-23 2uz0A 263 7.74e-23 2bklA 695 9.20e-23 1wb4A 297 3.21e-22 c.69.1.2 120827 3c8dA 403 3.88e-22 2jbwA 386 1.14e-21 1vlqA 337 2.11e-21 c.69.1.25 108848 1l7aA 318 2.39e-21 c.69.1.25 77772 2b20A 403 2.43e-21 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 2.45e-21 2r8bA 251 3.76e-21 2i3dA 249 4.82e-21 3b5eA 223 5.79e-21 1pv1A 299 6.41e-21 c.69.1.34 111639 1f0nA 285 6.49e-21 c.69.1.3 34636 1jjfA 268 3.10e-20 c.69.1.2 66765 1fj2A 232 5.82e-20 c.69.1.14 34720 1ycdA 243 6.12e-20 3bxpA 277 6.77e-20 2o2gA 223 8.22e-20 1jfrA 262 1.65e-19 c.69.1.16 34724 1din 236 2.04e-19 1zi8A 236 2.13e-19 2fx5A 258 2.47e-19 1lzlA 323 4.44e-19 c.69.1.2 78306 2fukA 220 7.61e-19 1jjiA 311 2.59e-18 c.69.1.2 66766 1u4nA 310 3.67e-18 c.69.1.2 113021 1ufoA 238 3.93e-18 c.69.1.27 99344 1qe3A 489 7.07e-18 c.69.1.1 34630 1r88A 280 7.36e-18 c.69.1.3 97219 1auoA 218 7.82e-18 c.69.1.14 34716 1thg 544 8.85e-18 1ea5A 537 9.28e-18 c.69.1.1 34592 1dqzA 280 1.30e-17 c.69.1.3 34638 1p0iA 529 1.41e-17 c.69.1.1 93867 1vkhA 273 3.52e-17 c.69.1.32 108662 1mpxA 615 3.81e-17 b.18.1.13,c.69.1.21 85041,85042 1cleA 534 4.34e-17 c.69.1.17 34771 2hdwA 367 1.16e-16 1ukcA 522 1.64e-16 c.69.1.17 107911 1llfA 534 2.46e-16 c.69.1.17 78094 2pblA 262 8.91e-16 1ju3A 583 3.87e-15 b.18.1.13,c.69.1.21 67300,67301 2bce 581 4.29e-15 2hm7A 310 2.23e-14 1imjA 210 2.24e-14 c.69.1.23 71246 1wm1A 317 2.72e-14 c.69.1.7 109405 1b6g 310 1.08e-13 1ede 310 1.55e-13 1qtrA 317 1.60e-13 c.69.1.7 34660 1k8qA 377 1.64e-13 c.69.1.6 72177 1j1iA 296 1.66e-13 c.69.1.10 83977 1q0rA 298 1.75e-13 c.69.1.28 95508 1jkmA 358 1.86e-13 c.69.1.2 34633 1azwA 313 3.44e-13 c.69.1.7 34658 1u2eA 289 4.33e-13 1hlgA 371 5.60e-13 c.69.1.6 34656 2o7rA 338 6.74e-13 1c4xA 285 7.97e-13 c.69.1.10 34684 1ehyA 294 1.04e-12 c.69.1.11 34693 1bn7A 294 1.16e-12 c.69.1.8 34677 1uk8A 282 1.17e-12 c.69.1.10 107907 1mtzA 293 1.29e-12 c.69.1.7 79467 1va4A 279 1.30e-12 c.69.1.12 108458 2veoA 441 1.88e-12 1tqhA 247 2.37e-12 c.69.1.29 107225 1lnsA 763 2.55e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1yasA 257 3.01e-12 c.69.1.20 34801 1a88A 275 4.86e-12 c.69.1.12 34707 1womA 271 5.00e-12 2qjwA 176 6.44e-12 1tca 317 8.81e-12 1broA 277 8.87e-12 c.69.1.12 34700 1qj4A 257 9.59e-12 c.69.1.20 34796 2ocgA 254 1.03e-11 1brt 277 1.08e-11 1xqwA 293 1.19e-11 3bdiA 207 1.41e-11 1xklA 273 1.43e-11 c.69.1.20 115410 1m33A 258 1.83e-11 c.69.1.26 78514 2r11A 306 1.85e-11 2h7cA 542 1.92e-11 c.69.1.1 136207 3c5vA 316 1.94e-11 2cjpA 328 2.16e-11 1b6gA 310 2.25e-11 c.69.1.8 34661 1hkhA 279 3.67e-11 c.69.1.12 90628 1cv2A 296 3.89e-11 c.69.1.8 34680 1zd3A 555 3.93e-11 c.108.1.2,c.69.1.11 124930,124931 1mj5A 302 4.01e-11 c.69.1.8 91285 1r1dA 247 4.01e-11 c.69.1.29 96813 1zoiA 276 4.18e-11 2e3jA 356 4.80e-11 2rhwA 283 5.17e-11 2ogtA 498 5.30e-11 2og1A 286 5.40e-11 2puhA 286 6.31e-11 1uxoA 192 6.77e-11 c.69.1.31 108121 3bwxA 285 7.74e-11 1ei9A 279 9.66e-11 c.69.1.13 34713 2b61A 377 1.03e-10 2pujA 286 1.12e-10 1a8sA 273 1.75e-10 c.69.1.12 34710 2yysA 286 1.85e-10 3bdvA 191 1.86e-10 2psdA 318 1.86e-10 2qruA 274 2.11e-10 1mnaA 298 2.37e-10 c.69.1.22 79322 2qs9A 194 2.59e-10 2qmqA 286 3.05e-10 1brtA 277 3.39e-10 c.69.1.12 34699 1a8qA 274 3.43e-10 c.69.1.12 34702 1tcaA 317 3.77e-10 c.69.1.17 34726 1pjaA 302 4.17e-10 c.69.1.13 94758 1qo7A 394 6.41e-10 c.69.1.11 34697 3bf7A 255 6.69e-10 1r3dA 264 7.51e-10 c.69.1.35 111680 1gpl 432 8.17e-10 1qlwA 328 9.95e-10 c.69.1.15 34722 1y37A 304 1.02e-09 2qvbA 297 1.22e-09 1bu8A 452 2.33e-09 b.12.1.2,c.69.1.19 23647,34795 2o2iA 300 2.62e-09 2pl5A 366 3.61e-09 1ys1X 320 4.19e-09 2rauA 354 6.49e-09 1cvl 319 7.23e-09 1thgA 544 7.36e-09 c.69.1.17 34763 1jmkC 230 8.87e-09 c.69.1.22 71747 3bixA 574 1.27e-08 1cvlA 319 3.54e-08 c.69.1.18 34786 2d80A 318 6.89e-08 2hfkA 319 7.86e-08 2bceA 585 8.20e-08 c.69.1.1 34625 1hplA 449 2.84e-07 b.12.1.2,c.69.1.19 23639,34787 2cb9A 244 3.21e-07 2q0xA 335 4.00e-07 1ivyA 452 1.90e-06 c.69.1.5 34654 2px6A 316 3.39e-06 1ac5A 483 5.83e-06 c.69.1.5 34653 2d81A 318 7.58e-06 1ispA 181 7.69e-06 c.69.1.18 76778 1ac5 483 2.92e-05 1i6wA 181 3.65e-05 c.69.1.18 61859 1gt6A 269 9.63e-05 c.69.1.17 76342 1tibA 269 0.000123 c.69.1.17 34738 1uwcA 261 0.000342 c.69.1.17 100101 1tib 269 0.000993 2z5gA 387 0.001078 2bjhA 260 0.001999 3tglA 269 0.006000 c.69.1.17 34733 2dsnA 387 0.03346 1cexA 214 0.03361 c.69.1.30 31285 1whtA 256 0.1018 c.69.1.5 34646 1whsA 255 0.1399 c.69.1.5 34649 1cex 214 0.2216 1thtA 305 0.2430 c.69.1.13 34711 2oryA 346 0.2739 1ku0A 388 0.6680 c.69.1.18 72994 1whtB 153 1.731 1whsB 153 1.899 1jz8A 1023 2.149 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2csuA 457 3.316 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1g66A 207 3.934 c.69.1.30 31329 1k32A 1045 4.292 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1ve5A 311 5.319 c.79.1.1 120013 1g0cA 364 6.762 c.1.8.3 60165 1vflA 356 6.851 c.1.9.1 120041 2bv9A 290 7.406 c.1.8.3 129242 1qh8A 478 8.360 c.92.2.3 35633 2jg2A 422 8.503 1yt8A 539 9.455 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1m22A 503 11.43 c.117.1.1 78464 2pc8A 400 11.61 1eceA 358 11.91 c.1.8.3 28813 2q4zA 312 16.15 1yb0A 159 16.52 d.118.1.1 122865 3ctpA 330 16.93 1db3A 372 17.19 c.2.1.2 29813 2c2nA 339 17.29 1itxA 419 17.30 c.1.8.5,d.26.3.1 71425,71426 1xpkC 388 17.58 c.95.1.2,c.95.1.2 115747,115748 2czqA 205 18.79 2bmaA 470 18.87 2z2uA 311 19.26 1rxyA 253 19.66 c.56.2.1 98065 2cksA 306 20.94 1ryiA 382 21.09 c.3.1.2,d.16.1.3 118813,118814 2ob3A 330 21.43 2v9cA 215 23.90 2nu8B 388 26.10 1mjnA 179 27.19 c.62.1.1 79210 2q3bA 313 27.83 1tyfA 193 28.72 c.14.1.1 30885 1eiwA 111 29.15 c.23.3.1 31130 2rkqA 169 30.53 1t2aA 375 31.32 c.2.1.2 99078 1edqA 540 32.27 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2dri 271 33.31 1gudA 288 33.97 c.93.1.1 83326 1to6A 371 34.17 c.141.1.1 107170 2grjA 192 34.95 1qnrA 344 35.13 c.1.8.3 28834 1gu7A 364 35.60 b.35.1.2,c.2.1.1 83321,83322 1orrA 347 35.67 c.2.1.2 93460 1vhwA 253 35.78 c.56.2.1 100706 1ceo 343 38.72 1fpzA 212 39.85 c.45.1.1 59976 1w85A 368 40.66 c.36.1.11 114335 2pqmA 343 42.10 1usgA 346 42.27 c.93.1.1 99864 1eqcA 394 42.42 c.1.8.3 28811 2o55A 258 43.51 1vp8A 201 44.00 c.49.1.2 113947 2d51A 406 44.55 1lfaA 187 45.81 c.62.1.1 34122 1v0wA 506 46.35 d.136.1.2,d.136.1.2 108220,108221 1wb0A 445 46.93 c.1.8.5,d.26.3.1 120825,120826 2vjxA 846 47.27 1xyzA 347 47.51 c.1.8.3 28804 1szoA 257 47.60 c.14.1.3 106164 1j0aA 325 47.80 c.79.1.1 83871 2yhx 457 48.76 1o8uA 257 48.78 c.14.1.3 81194 1fcjA 322 49.84 c.79.1.1 35289 2a3nA 355 50.01 3clwA 507 50.44 1edg 380 50.47 1z15A 344 50.53 1e3jA 352 51.80 b.35.1.2,c.2.1.1 24765,29781 1ve1A 304 52.32 c.79.1.1 120007 1ihuA 589 52.89 c.37.1.10,c.37.1.10 62394,62395 1p5jA 372 53.21 c.79.1.1 104067 1hjsA 332 53.37 c.1.8.3 83492 2i7gA 376 54.10 2yhxA 457 54.42 i.12.1.1 46024 2h00A 254 54.48 c.66.1.54 135925 1rwtA 232 54.93 f.43.1.1 97992 1qe5A 266 55.28 c.56.2.1 33784 1nijA 318 55.74 c.37.1.10,d.237.1.1 85741,85742 1g2oA 268 56.13 c.56.2.1 60228 1tjyA 316 56.53 c.93.1.1 107062 2f6kA 307 58.15 c.1.9.15 133047 1e9lA 377 58.37 c.1.8.5,d.26.3.1 59395,59396 1xr4A 509 59.15 c.124.1.2,c.124.1.2 115860,115861 1vf8A 377 59.69 c.1.8.5,d.26.3.1 120029,120030 2osxA 481 59.99 1f74A 293 60.18 c.1.10.1 29079 2nm0A 253 60.38 1hzdA 272 62.11 c.14.1.3 65969 1h4pA 408 63.04 c.1.8.3 90617 2dx6A 159 63.68 3c8uA 208 64.41 1ctn 540 66.37 1zowA 313 67.72 1hdoA 206 68.20 c.2.1.2 60965 2gt1A 326 68.76 1tk9A 188 69.60 c.80.1.3 107082 1v7cA 351 69.93 c.79.1.1 100446 2i2wA 212 70.02 1ng4A 390 70.18 c.3.1.2,d.16.1.3 85666,85667 1h72C 296 71.81 d.14.1.5,d.58.26.1 60712,60713 2ct8A 497 72.14 2ae8A 221 72.23 d.14.1.9,d.14.1.9 126604,126605 2q2rA 373 73.21 1z7wA 322 74.35 c.79.1.1 124674 2qtwB 546 74.81 1ivnA 190 76.32 c.23.10.5 83719 1vmkA 277 76.40 c.56.2.1 113680 2liv 344 77.81 1fh9A 312 79.28 c.1.8.3 28913 1w1iE 357 79.80 c.1.9.1 109051 1jvsA 400 80.10 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1ajsA 412 80.76 c.67.1.1 34276 2hpvA 208 81.48 1m1nA 491 82.78 c.92.2.3 78417 1bg4A 302 83.45 c.1.8.3 28806 1q0qA 406 84.09 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2q62A 247 87.24 1g8aA 227 87.85 c.66.1.3 90506 1x92A 199 88.05 c.80.1.3 114976 1moqA 368 88.31 c.80.1.1 35302 1dmgA 225 88.36 c.22.1.1 31036 1x6vA 630 89.21 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1k6xA 352 89.32 c.2.1.2 68238 1kngA 156 89.94 c.47.1.10 72777