# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.10e-27 2hu5A 582 3.41e-27 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 6.02e-27 1orvA 728 2.27e-25 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 6.87e-25 b.70.3.1,c.69.1.24 115251,115252 1o6gA 710 2.29e-24 b.69.7.1,c.69.1.4 81087,81088 2qm0A 275 3.33e-24 1h2wA 710 3.47e-24 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 3.71e-24 b.69.7.1,c.69.1.4 27673,34641 1yr2A 741 4.95e-24 2bklA 695 1.27e-23 2uz0A 263 1.33e-23 3c8dA 403 9.69e-23 1wb4A 297 2.29e-22 c.69.1.2 120827 2jbwA 386 2.73e-22 1l7aA 318 3.67e-22 c.69.1.25 77772 2b20A 403 7.46e-22 b.1.18.20,c.69.1.2 127685,127686 1vlqA 337 7.83e-22 c.69.1.25 108848 2gzsA 278 1.14e-21 2r8bA 251 1.14e-21 2i3dA 249 1.68e-21 3b5eA 223 2.09e-21 1pv1A 299 2.45e-21 c.69.1.34 111639 1f0nA 285 2.50e-21 c.69.1.3 34636 1jjfA 268 4.29e-21 c.69.1.2 66765 1fj2A 232 2.21e-20 c.69.1.14 34720 2o2gA 223 3.89e-20 2fx5A 258 3.90e-20 3bxpA 277 3.97e-20 1lzlA 323 4.57e-20 c.69.1.2 78306 1ycdA 243 4.76e-20 1zi8A 236 5.12e-20 1din 236 6.41e-20 1jfrA 262 6.85e-20 c.69.1.16 34724 2fukA 220 2.07e-19 1jjiA 311 3.68e-19 c.69.1.2 66766 1u4nA 310 9.99e-19 c.69.1.2 113021 1r88A 280 1.86e-18 c.69.1.3 97219 1thg 544 2.38e-18 1mpxA 615 2.59e-18 b.18.1.13,c.69.1.21 85041,85042 1auoA 218 2.98e-18 c.69.1.14 34716 1dqzA 280 3.24e-18 c.69.1.3 34638 1qe3A 489 3.42e-18 c.69.1.1 34630 1ufoA 238 4.09e-18 c.69.1.27 99344 1ea5A 537 5.45e-18 c.69.1.1 34592 1p0iA 529 6.48e-18 c.69.1.1 93867 1cleA 534 7.55e-18 c.69.1.17 34771 1vkhA 273 2.01e-17 c.69.1.32 108662 2hdwA 367 2.64e-17 1llfA 534 2.85e-17 c.69.1.17 78094 1ukcA 522 6.12e-17 c.69.1.17 107911 2pblA 262 3.05e-16 2bce 581 1.51e-15 1ju3A 583 1.60e-15 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 5.60e-15 1imjA 210 1.38e-14 c.69.1.23 71246 1wm1A 317 2.35e-14 c.69.1.7 109405 1jkmA 358 4.14e-14 c.69.1.2 34633 1b6g 310 4.88e-14 1ede 310 5.73e-14 1q0rA 298 5.91e-14 c.69.1.28 95508 1k8qA 377 6.13e-14 c.69.1.6 72177 1j1iA 296 7.19e-14 c.69.1.10 83977 1hlgA 371 9.87e-14 c.69.1.6 34656 1qtrA 317 2.25e-13 c.69.1.7 34660 1u2eA 289 2.26e-13 2o7rA 338 2.88e-13 1lnsA 763 3.17e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1azwA 313 3.41e-13 c.69.1.7 34658 1c4xA 285 4.30e-13 c.69.1.10 34684 1bn7A 294 4.48e-13 c.69.1.8 34677 1uk8A 282 4.75e-13 c.69.1.10 107907 1mtzA 293 4.97e-13 c.69.1.7 79467 1va4A 279 5.16e-13 c.69.1.12 108458 1ehyA 294 5.18e-13 c.69.1.11 34693 2veoA 441 7.98e-13 1yasA 257 1.31e-12 c.69.1.20 34801 1a88A 275 1.35e-12 c.69.1.12 34707 1tqhA 247 1.47e-12 c.69.1.29 107225 2qjwA 176 2.67e-12 1womA 271 3.12e-12 1brt 277 3.42e-12 1qj4A 257 3.55e-12 c.69.1.20 34796 1broA 277 5.11e-12 c.69.1.12 34700 1xklA 273 6.21e-12 c.69.1.20 115410 1tca 317 6.58e-12 1xqwA 293 7.13e-12 1zoiA 276 7.35e-12 1m33A 258 8.49e-12 c.69.1.26 78514 2cjpA 328 8.94e-12 1hkhA 279 9.79e-12 c.69.1.12 90628 1r1dA 247 9.95e-12 c.69.1.29 96813 2h7cA 542 1.07e-11 c.69.1.1 136207 3bdiA 207 1.07e-11 1zd3A 555 1.14e-11 c.108.1.2,c.69.1.11 124930,124931 2r11A 306 1.15e-11 2ogtA 498 1.19e-11 2ocgA 254 1.35e-11 1b6gA 310 1.64e-11 c.69.1.8 34661 2rhwA 283 1.78e-11 3c5vA 316 2.32e-11 1mj5A 302 2.32e-11 c.69.1.8 91285 2og1A 286 2.35e-11 1cv2A 296 2.66e-11 c.69.1.8 34680 2puhA 286 2.89e-11 2e3jA 356 3.12e-11 3bwxA 285 3.23e-11 1uxoA 192 3.58e-11 c.69.1.31 108121 2pujA 286 4.44e-11 1a8sA 273 4.78e-11 c.69.1.12 34710 1a8qA 274 7.59e-11 c.69.1.12 34702 2psdA 318 8.90e-11 1ei9A 279 9.96e-11 c.69.1.13 34713 2b61A 377 1.04e-10 1mnaA 298 1.52e-10 c.69.1.22 79322 1brtA 277 1.56e-10 c.69.1.12 34699 2qmqA 286 1.93e-10 2qs9A 194 2.06e-10 2yysA 286 2.17e-10 3bdvA 191 2.60e-10 1qo7A 394 2.89e-10 c.69.1.11 34697 1tcaA 317 2.93e-10 c.69.1.17 34726 3bf7A 255 3.59e-10 1r3dA 264 3.90e-10 c.69.1.35 111680 1gpl 432 4.77e-10 1pjaA 302 5.26e-10 c.69.1.13 94758 1qlwA 328 5.64e-10 c.69.1.15 34722 1y37A 304 8.23e-10 2qruA 274 8.32e-10 1bu8A 452 1.07e-09 b.12.1.2,c.69.1.19 23647,34795 2qvbA 297 1.12e-09 2o2iA 300 1.67e-09 2rauA 354 1.92e-09 1ys1X 320 2.11e-09 3bixA 574 2.50e-09 1thgA 544 3.23e-09 c.69.1.17 34763 2pl5A 366 3.43e-09 1cvl 319 4.69e-09 1jmkC 230 1.48e-08 c.69.1.22 71747 2bceA 585 1.68e-08 c.69.1.1 34625 2d80A 318 4.05e-08 1cvlA 319 4.32e-08 c.69.1.18 34786 1hplA 449 6.07e-08 b.12.1.2,c.69.1.19 23639,34787 2hfkA 319 8.37e-08 2cb9A 244 3.22e-07 2q0xA 335 6.33e-07 1ivyA 452 8.37e-07 c.69.1.5 34654 2d81A 318 1.89e-06 1ispA 181 3.06e-06 c.69.1.18 76778 2px6A 316 3.52e-06 1ac5A 483 6.97e-06 c.69.1.5 34653 1i6wA 181 1.26e-05 c.69.1.18 61859 1ac5 483 1.90e-05 1tibA 269 0.000154 c.69.1.17 34738 1gt6A 269 0.000189 c.69.1.17 76342 2z5gA 387 0.000441 1uwcA 261 0.000733 c.69.1.17 100101 1tib 269 0.001347 2bjhA 260 0.004434 3tglA 269 0.005184 c.69.1.17 34733 2dsnA 387 0.02252 1cexA 214 0.02590 c.69.1.30 31285 1whtA 256 0.05232 c.69.1.5 34646 1cex 214 0.09700 1whsA 255 0.1148 c.69.1.5 34649 1thtA 305 0.2455 c.69.1.13 34711 2oryA 346 0.3524 1whtB 153 0.7080 1ku0A 388 0.7183 c.69.1.18 72994 1jz8A 1023 0.8274 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1whsB 153 0.9195 2csuA 457 1.409 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1g0cA 364 4.101 c.1.8.3 60165 1g66A 207 4.336 c.69.1.30 31329 1vflA 356 4.338 c.1.9.1 120041 1ve5A 311 5.310 c.79.1.1 120013 1m22A 503 6.355 c.117.1.1 78464 1ryiA 382 8.843 c.3.1.2,d.16.1.3 118813,118814 1db3A 372 8.965 c.2.1.2 29813 2vjxA 846 9.118 1qh8A 478 9.443 c.92.2.3 35633 2cksA 306 10.09 2bv9A 290 10.48 c.1.8.3 129242 2czqA 205 11.99 2c2nA 339 12.10 2ct8A 497 12.76 2jg2A 422 14.27 1qnrA 344 14.62 c.1.8.3 28834 3ctpA 330 15.07 1itxA 419 15.81 c.1.8.5,d.26.3.1 71425,71426 1mjnA 179 16.59 c.62.1.1 79210 1gu7A 364 17.00 b.35.1.2,c.2.1.1 83321,83322 1xpkC 388 17.91 c.95.1.2,c.95.1.2 115747,115748 2q4zA 312 19.44 2ob3A 330 20.04 1tyfA 193 21.34 c.14.1.1 30885 2bfgA 503 22.24 b.71.1.2,c.1.8.3 128423,128424 1rxyA 253 22.86 c.56.2.1 98065 2z2uA 311 23.69 1v7cA 351 23.74 c.79.1.1 100446 1yt8A 539 23.75 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1edg 380 24.30 2q3bA 313 24.73 1p5jA 372 25.40 c.79.1.1 104067 1iirA 415 25.67 c.87.1.5 62453 1eqcA 394 26.03 c.1.8.3 28811 1vmkA 277 27.96 c.56.2.1 113680 1vf8A 377 28.18 c.1.8.5,d.26.3.1 120029,120030 2v9cA 215 28.80 1v6tA 255 29.72 c.6.2.5 113550 1k32A 1045 30.57 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1e3jA 352 31.37 b.35.1.2,c.2.1.1 24765,29781 1eceA 358 31.84 c.1.8.3 28813 1ve1A 304 32.62 c.79.1.1 120007 1vhwA 253 32.80 c.56.2.1 100706 1orrA 347 33.86 c.2.1.2 93460 1eiwA 111 33.88 c.23.3.1 31130 2dri 271 34.54 2f6kA 307 34.79 c.1.9.15 133047 1yb0A 159 34.81 d.118.1.1 122865 1ajsA 412 35.15 c.67.1.1 34276 2osxA 481 35.42 2qtwB 546 35.61 1ceo 343 35.86 2cuyA 305 35.90 2rkqA 169 36.58 1w85A 368 37.00 c.36.1.11 114335 2pc8A 400 37.72 2gkoA 309 38.77 1v0wA 506 39.17 d.136.1.2,d.136.1.2 108220,108221 2grjA 192 39.26 1uhvA 500 41.61 b.71.1.2,c.1.8.3 99402,99403 1t2aA 375 41.85 c.2.1.2 99078 1q0qA 406 42.40 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1lfaA 187 43.14 c.62.1.1 34122 2a3nA 355 43.32 2df8A 325 45.06 1usgA 346 45.06 c.93.1.1 99864 1fcjA 322 45.06 c.79.1.1 35289 1hjsA 332 46.67 c.1.8.3 83492 2pfuA 99 47.48 1z7wA 322 48.08 c.79.1.1 124674 1ivnA 190 49.73 c.23.10.5 83719 1bg4A 302 49.76 c.1.8.3 28806 1owqA 361 50.28 c.1.8.5,d.26.3.1 104041,104042 2dx6A 159 50.30 1pixA 587 51.74 c.14.1.4,c.14.1.4 118578,118579 1ng4A 390 51.91 c.3.1.2,d.16.1.3 85666,85667 2ppyA 265 51.95 1h4pA 408 54.63 c.1.8.3 90617 3clwA 507 54.66 1uf3A 228 54.68 d.159.1.6 99317 2dfaA 250 55.53 c.6.2.5 131469 1rwtA 232 56.11 f.43.1.1 97992 1z15A 344 56.36 1tk9A 188 56.72 c.80.1.3 107082 2bmaA 470 57.76 1tjyA 316 58.11 c.93.1.1 107062 1fpzA 212 58.50 c.45.1.1 59976 1to6A 371 58.91 c.141.1.1 107170 1jvsA 400 59.32 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1fobA 334 59.66 c.1.8.3 83255 1zowA 313 60.90 1f0kA 364 61.41 c.87.1.2 35465 1jaeA 471 61.70 b.71.1.1,c.1.8.1 27773,28760 2o55A 258 62.23 2nu8B 388 62.71 2iv2X 715 63.21 b.52.2.2,c.81.1.1 137714,137715 2nm0A 253 63.35 1hzdA 272 64.29 c.14.1.3 65969 1fh9A 312 65.63 c.1.8.3 28913 1x6vA 630 67.19 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1o8uA 257 67.64 c.14.1.3 81194 1b8oA 284 68.40 c.56.2.1 33762 1ceoA 343 69.19 c.1.8.3 28808 2q62A 247 69.30 1szoA 257 69.79 c.14.1.3 106164 1edqA 540 71.45 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1xr4A 509 72.47 c.124.1.2,c.124.1.2 115860,115861 1xyzA 347 73.30 c.1.8.3 28804 2d51A 406 74.61 1rh9A 373 74.77 c.1.8.3 118773 1n7hA 381 76.50 c.2.1.2 80250 1pamA 686 76.78 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 3c8uA 208 78.25 1qgoA 264 78.57 c.92.1.2 35596 1w1iE 357 79.10 c.1.9.1 109051 1e9lA 377 79.53 c.1.8.5,d.26.3.1 59395,59396 2pqmA 343 79.91 1g2oA 268 80.21 c.56.2.1 60228 2uz1A 563 82.38 2i7gA 376 82.41 2nxwA 565 83.33 2h1yA 321 83.84 1hkkA 364 84.18 c.1.8.5,d.26.3.1 90634,90635 1h1nA 305 84.57 c.1.8.3 70855 2i2wA 212 86.24 1f74A 293 86.79 c.1.10.1 29079 1x92A 199 86.92 c.80.1.3 114976 1r9jA 673 87.28 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1gudA 288 87.56 c.93.1.1 83326 2ez9A 603 87.62 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1vp8A 201 88.12 c.49.1.2 113947 1ri5A 298 88.38 c.66.1.34 97502 2c82A 413 89.37 2liv 344 89.39