# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 4.10e-26 2z3zA 706 1.20e-25 2hu5A 582 1.62e-25 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 1.11e-23 b.70.3.1,c.69.1.24 87354,87355 1xfdA 723 1.22e-23 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 3.53e-23 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 3.54e-23 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 3.68e-23 b.69.7.1,c.69.1.4 27673,34641 2qm0A 275 4.18e-23 1yr2A 741 5.91e-23 2uz0A 263 2.72e-22 2bklA 695 3.43e-22 3c8dA 403 2.51e-21 1wb4A 297 3.02e-21 c.69.1.2 120827 2jbwA 386 5.72e-21 1vlqA 337 9.02e-21 c.69.1.25 108848 1l7aA 318 1.04e-20 c.69.1.25 77772 2b20A 403 1.25e-20 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 1.35e-20 1pv1A 299 1.71e-20 c.69.1.34 111639 2r8bA 251 2.10e-20 3b5eA 223 2.81e-20 2i3dA 249 3.13e-20 1f0nA 285 3.30e-20 c.69.1.3 34636 1jjfA 268 9.67e-20 c.69.1.2 66765 1fj2A 232 3.04e-19 c.69.1.14 34720 3bxpA 277 3.43e-19 2o2gA 223 4.16e-19 2fx5A 258 5.93e-19 1ycdA 243 7.36e-19 1zi8A 236 7.47e-19 1jfrA 262 7.97e-19 c.69.1.16 34724 1lzlA 323 9.35e-19 c.69.1.2 78306 1din 236 9.55e-19 2fukA 220 2.93e-18 1jjiA 311 7.01e-18 c.69.1.2 66766 1u4nA 310 7.63e-18 c.69.1.2 113021 1thg 544 1.57e-17 1auoA 218 1.72e-17 c.69.1.14 34716 1ufoA 238 2.07e-17 c.69.1.27 99344 1r88A 280 2.25e-17 c.69.1.3 97219 1qe3A 489 2.48e-17 c.69.1.1 34630 1ea5A 537 2.93e-17 c.69.1.1 34592 1p0iA 529 3.94e-17 c.69.1.1 93867 1mpxA 615 4.39e-17 b.18.1.13,c.69.1.21 85041,85042 1dqzA 280 4.41e-17 c.69.1.3 34638 1cleA 534 9.88e-17 c.69.1.17 34771 1vkhA 273 1.69e-16 c.69.1.32 108662 2hdwA 367 2.92e-16 1llfA 534 3.18e-16 c.69.1.17 78094 1ukcA 522 4.20e-16 c.69.1.17 107911 2pblA 262 4.72e-15 1ju3A 583 5.97e-15 b.18.1.13,c.69.1.21 67300,67301 2bce 581 1.01e-14 2hm7A 310 3.38e-14 1imjA 210 6.58e-14 c.69.1.23 71246 1wm1A 317 6.76e-14 c.69.1.7 109405 1jkmA 358 2.29e-13 c.69.1.2 34633 1b6g 310 3.16e-13 1j1iA 296 3.38e-13 c.69.1.10 83977 1k8qA 377 3.71e-13 c.69.1.6 72177 1ede 310 4.28e-13 1q0rA 298 4.73e-13 c.69.1.28 95508 1qtrA 317 5.12e-13 c.69.1.7 34660 1hlgA 371 6.01e-13 c.69.1.6 34656 1azwA 313 9.18e-13 c.69.1.7 34658 1u2eA 289 9.58e-13 2o7rA 338 1.25e-12 1bn7A 294 1.74e-12 c.69.1.8 34677 1va4A 279 1.88e-12 c.69.1.12 108458 1c4xA 285 2.05e-12 c.69.1.10 34684 1mtzA 293 2.33e-12 c.69.1.7 79467 1lnsA 763 2.65e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1uk8A 282 2.80e-12 c.69.1.10 107907 1ehyA 294 2.90e-12 c.69.1.11 34693 2veoA 441 4.50e-12 1tqhA 247 4.55e-12 c.69.1.29 107225 1yasA 257 5.21e-12 c.69.1.20 34801 1a88A 275 6.89e-12 c.69.1.12 34707 1womA 271 1.03e-11 1qj4A 257 1.41e-11 c.69.1.20 34796 1brt 277 1.50e-11 1broA 277 1.61e-11 c.69.1.12 34700 2qjwA 176 1.84e-11 1xqwA 293 1.91e-11 1tca 317 2.52e-11 1m33A 258 2.56e-11 c.69.1.26 78514 3bdiA 207 2.92e-11 1hkhA 279 3.04e-11 c.69.1.12 90628 2h7cA 542 3.08e-11 c.69.1.1 136207 1r1dA 247 3.68e-11 c.69.1.29 96813 1zd3A 555 3.75e-11 c.108.1.2,c.69.1.11 124930,124931 2cjpA 328 3.82e-11 2ogtA 498 3.85e-11 3c5vA 316 3.85e-11 2ocgA 254 4.03e-11 1zoiA 276 4.20e-11 1xklA 273 4.77e-11 c.69.1.20 115410 2r11A 306 4.80e-11 1b6gA 310 5.83e-11 c.69.1.8 34661 1cv2A 296 6.35e-11 c.69.1.8 34680 1mj5A 302 7.46e-11 c.69.1.8 91285 2rhwA 283 7.52e-11 2e3jA 356 1.22e-10 2puhA 286 1.29e-10 2og1A 286 1.35e-10 1a8sA 273 1.35e-10 c.69.1.12 34710 3bwxA 285 1.47e-10 2pujA 286 1.93e-10 1a8qA 274 1.99e-10 c.69.1.12 34702 1uxoA 192 2.66e-10 c.69.1.31 108121 1ei9A 279 2.76e-10 c.69.1.13 34713 2b61A 377 3.56e-10 1mnaA 298 4.34e-10 c.69.1.22 79322 2psdA 318 4.35e-10 2qmqA 286 5.44e-10 1brtA 277 5.46e-10 c.69.1.12 34699 2yysA 286 6.88e-10 1r3dA 264 8.13e-10 c.69.1.35 111680 1gpl 432 8.33e-10 2qs9A 194 9.10e-10 3bdvA 191 9.33e-10 1qo7A 394 1.04e-09 c.69.1.11 34697 2qruA 274 1.06e-09 1pjaA 302 1.08e-09 c.69.1.13 94758 1tcaA 317 1.11e-09 c.69.1.17 34726 3bf7A 255 1.18e-09 1y37A 304 1.83e-09 1bu8A 452 2.42e-09 b.12.1.2,c.69.1.19 23647,34795 2rauA 354 2.45e-09 1qlwA 328 2.80e-09 c.69.1.15 34722 2qvbA 297 3.36e-09 1ys1X 320 5.51e-09 2o2iA 300 6.11e-09 2pl5A 366 7.49e-09 1thgA 544 8.83e-09 c.69.1.17 34763 3bixA 574 9.82e-09 1cvl 319 1.44e-08 1jmkC 230 3.13e-08 c.69.1.22 71747 2bceA 585 4.94e-08 c.69.1.1 34625 1cvlA 319 1.22e-07 c.69.1.18 34786 2hfkA 319 1.33e-07 1hplA 449 1.61e-07 b.12.1.2,c.69.1.19 23639,34787 2d80A 318 1.66e-07 2cb9A 244 7.80e-07 2q0xA 335 1.02e-06 1ivyA 452 3.44e-06 c.69.1.5 34654 2d81A 318 3.92e-06 2px6A 316 5.52e-06 1ispA 181 7.92e-06 c.69.1.18 76778 1ac5A 483 1.52e-05 c.69.1.5 34653 1i6wA 181 3.79e-05 c.69.1.18 61859 1ac5 483 4.54e-05 1gt6A 269 0.000221 c.69.1.17 76342 1tibA 269 0.000451 c.69.1.17 34738 1uwcA 261 0.000982 c.69.1.17 100101 2z5gA 387 0.001519 1tib 269 0.001908 2bjhA 260 0.006560 3tglA 269 0.007781 c.69.1.17 34733 1cexA 214 0.02513 c.69.1.30 31285 2dsnA 387 0.04914 1whtA 256 0.06839 c.69.1.5 34646 1cex 214 0.1205 1whsA 255 0.1647 c.69.1.5 34649 1thtA 305 0.2200 c.69.1.13 34711 2oryA 346 0.5349 1ku0A 388 1.192 c.69.1.18 72994 2csuA 457 1.366 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1jz8A 1023 1.662 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1whtB 153 2.186 1g66A 207 2.658 c.69.1.30 31329 1whsB 153 2.778 1vflA 356 3.236 c.1.9.1 120041 1g0cA 364 4.315 c.1.8.3 60165 1db3A 372 5.609 c.2.1.2 29813 1qh8A 478 7.163 c.92.2.3 35633 1ve5A 311 7.561 c.79.1.1 120013 1m22A 503 8.279 c.117.1.1 78464 2czqA 205 10.69 2bv9A 290 11.50 c.1.8.3 129242 1qnrA 344 12.69 c.1.8.3 28834 1k32A 1045 14.21 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2q3bA 313 14.49 1itxA 419 16.04 c.1.8.5,d.26.3.1 71425,71426 1xpkC 388 16.14 c.95.1.2,c.95.1.2 115747,115748 1yt8A 539 17.85 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1orrA 347 18.45 c.2.1.2 93460 3ctpA 330 18.55 1gu7A 364 19.22 b.35.1.2,c.2.1.1 83321,83322 2ob3A 330 19.57 2cksA 306 20.24 2z2uA 311 20.57 2pc8A 400 21.06 1eqcA 394 22.26 c.1.8.3 28811 2dri 271 22.43 2jg2A 422 22.70 1mjnA 179 22.95 c.62.1.1 79210 1edg 380 23.08 1p5jA 372 23.19 c.79.1.1 104067 1ceo 343 23.38 2c2nA 339 23.49 2bfgA 503 24.70 b.71.1.2,c.1.8.3 128423,128424 1zowA 313 24.81 1e3jA 352 25.33 b.35.1.2,c.2.1.1 24765,29781 1tjyA 316 25.45 c.93.1.1 107062 1gudA 288 26.02 c.93.1.1 83326 2ct8A 497 26.15 1z7wA 322 26.23 c.79.1.1 124674 1rxyA 253 26.71 c.56.2.1 98065 2q4zA 312 27.39 1fcjA 322 27.70 c.79.1.1 35289 1eiwA 111 28.22 c.23.3.1 31130 1xyzA 347 28.86 c.1.8.3 28804 2qtwB 546 29.11 1vhwA 253 29.97 c.56.2.1 100706 1bg4A 302 30.42 c.1.8.3 28806 1ryiA 382 30.62 c.3.1.2,d.16.1.3 118813,118814 1t2aA 375 30.63 c.2.1.2 99078 1v7cA 351 30.90 c.79.1.1 100446 1ve1A 304 31.29 c.79.1.1 120007 1yb0A 159 31.29 d.118.1.1 122865 2rkqA 169 33.48 1eceA 358 36.17 c.1.8.3 28813 1to6A 371 36.93 c.141.1.1 107170 2vjxA 846 37.67 1tyfA 193 38.13 c.14.1.1 30885 1z7yA 322 39.35 c.79.1.1 124679 1lfaA 187 40.98 c.62.1.1 34122 1vmkA 277 41.97 c.56.2.1 113680 2grjA 192 42.78 1usgA 346 42.93 c.93.1.1 99864 2nm0A 253 43.53 1pamA 686 44.05 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1vf8A 377 44.42 c.1.8.5,d.26.3.1 120029,120030 1w85A 368 44.63 c.36.1.11 114335 1uhvA 500 46.80 b.71.1.2,c.1.8.3 99402,99403 1fh9A 312 47.42 c.1.8.3 28913 1owqA 361 48.94 c.1.8.5,d.26.3.1 104041,104042 2a3nA 355 49.02 1h1nA 305 50.29 c.1.8.3 70855 1szoA 257 50.88 c.14.1.3 106164 1rh9A 373 51.67 c.1.8.3 118773 1ivnA 190 53.59 c.23.10.5 83719 2v9cA 215 53.67 2pqmA 343 53.70 1z15A 344 53.87 1o8uA 257 53.92 c.14.1.3 81194 2uz1A 563 54.30 2osxA 481 54.49 1fpzA 212 54.65 c.45.1.1 59976 2cuyA 305 55.32 1vp8A 201 57.16 c.49.1.2 113947 1o58A 303 57.63 c.79.1.1 92491 2q62A 247 61.57 1q0qA 406 61.79 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1v0wA 506 62.22 d.136.1.2,d.136.1.2 108220,108221 1ceoA 343 62.94 c.1.8.3 28808 2e7zA 727 63.21 1f0kA 364 63.56 c.87.1.2 35465 1tk9A 188 64.02 c.80.1.3 107082 1hjsA 332 64.09 c.1.8.3 83492 1jvsA 400 64.87 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1g2oA 268 65.59 c.56.2.1 60228 2i2wA 212 65.65 2nu8B 388 67.18 2iv2X 715 69.43 b.52.2.2,c.81.1.1 137714,137715 3c8uA 208 69.96 1edqA 540 70.14 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2o55A 258 70.39 1nijA 318 71.19 c.37.1.10,d.237.1.1 85741,85742 1f74A 293 71.77 c.1.10.1 29079 2df8A 325 71.79 2f6kA 307 72.57 c.1.9.15 133047 2pfuA 99 72.74 2liv 344 73.14 1iirA 415 74.00 c.87.1.5 62453 1h4pA 408 74.43 c.1.8.3 90617 2ae8A 221 74.52 d.14.1.9,d.14.1.9 126604,126605 1qe5A 266 74.58 c.56.2.1 33784 2gt1A 326 74.63 2dx6A 159 74.85 1ri5A 298 74.98 c.66.1.34 97502 1j0aA 325 75.76 c.79.1.1 83871 1ajsA 412 77.31 c.67.1.1 34276 2gkoA 309 79.93 1rhyA 202 80.13 d.14.1.9,d.14.1.9 97491,97492 1w1iE 357 80.24 c.1.9.1 109051 3clwA 507 82.06 2ppyA 265 82.35 1wb0A 445 83.53 c.1.8.5,d.26.3.1 120825,120826 2f2hA 773 84.04 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1b8oA 284 84.19 c.56.2.1 33762 2bmaA 470 84.75 1k6xA 352 85.18 c.2.1.2 68238 1fobA 334 86.37 c.1.8.3 83255 2yvaA 196 87.45 1hzdA 272 87.70 c.14.1.3 65969 1v6tA 255 88.36 c.6.2.5 113550 1rwtA 232 88.56 f.43.1.1 97992 1es9A 232 88.64 c.23.10.3 31340 1e9lA 377 89.12 c.1.8.5,d.26.3.1 59395,59396