# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 3.30e-17 2z3zA 706 1.64e-16 2hu5A 582 2.68e-16 b.69.7.2,c.69.1.33 136763,136764 2qm0A 275 2.05e-15 1orvA 728 3.20e-15 b.70.3.1,c.69.1.24 87354,87355 2uz0A 263 9.23e-15 1xfdA 723 1.06e-14 b.70.3.1,c.69.1.24 115251,115252 2gzsA 278 2.57e-14 1qfmA 710 2.60e-14 b.69.7.1,c.69.1.4 27673,34641 1wb4A 297 2.96e-14 c.69.1.2 120827 1pv1A 299 3.13e-14 c.69.1.34 111639 1h2wA 710 4.10e-14 b.69.7.1,c.69.1.4 76596,76597 2jbwA 386 1.11e-13 2i3dA 249 1.15e-13 2r8bA 251 1.38e-13 1f0nA 285 1.45e-13 c.69.1.3 34636 2b20A 403 1.79e-13 b.1.18.20,c.69.1.2 127685,127686 3b5eA 223 1.90e-13 1zi8A 236 2.27e-13 1l7aA 318 2.89e-13 c.69.1.25 77772 1o6gA 710 3.24e-13 b.69.7.1,c.69.1.4 81087,81088 2bklA 695 3.56e-13 3c8dA 403 3.87e-13 1jjfA 268 4.96e-13 c.69.1.2 66765 1vlqA 337 5.06e-13 c.69.1.25 108848 1yr2A 741 5.48e-13 2o2gA 223 6.09e-13 1din 236 7.60e-13 1fj2A 232 7.90e-13 c.69.1.14 34720 1ycdA 243 1.23e-12 2fx5A 258 1.28e-12 1lzlA 323 1.37e-12 c.69.1.2 78306 1jfrA 262 1.38e-12 c.69.1.16 34724 1ufoA 238 1.82e-12 c.69.1.27 99344 2fukA 220 2.34e-12 1u4nA 310 3.33e-12 c.69.1.2 113021 3bxpA 277 4.22e-12 1jjiA 311 4.45e-12 c.69.1.2 66766 1auoA 218 4.91e-12 c.69.1.14 34716 1r88A 280 8.99e-12 c.69.1.3 97219 1mpxA 615 1.01e-11 b.18.1.13,c.69.1.21 85041,85042 1qe3A 489 1.86e-11 c.69.1.1 34630 1dqzA 280 1.95e-11 c.69.1.3 34638 1vkhA 273 3.02e-11 c.69.1.32 108662 1p0iA 529 4.37e-11 c.69.1.1 93867 2pblA 262 4.85e-11 2hdwA 367 6.53e-11 1llfA 534 1.20e-10 c.69.1.17 78094 1ea5A 537 1.50e-10 c.69.1.1 34592 1cleA 534 1.88e-10 c.69.1.17 34771 1ju3A 583 1.94e-10 b.18.1.13,c.69.1.21 67300,67301 1thg 544 2.71e-10 1ukcA 522 3.77e-10 c.69.1.17 107911 1imjA 210 6.47e-10 c.69.1.23 71246 2hm7A 310 1.24e-09 1wm1A 317 1.43e-09 c.69.1.7 109405 1q0rA 298 2.12e-09 c.69.1.28 95508 2o7rA 338 2.30e-09 1qtrA 317 3.13e-09 c.69.1.7 34660 1jkmA 358 3.17e-09 c.69.1.2 34633 1j1iA 296 3.90e-09 c.69.1.10 83977 1k8qA 377 4.78e-09 c.69.1.6 72177 1c4xA 285 5.00e-09 c.69.1.10 34684 1b6g 310 5.61e-09 1mtzA 293 5.76e-09 c.69.1.7 79467 1ede 310 5.95e-09 1hlgA 371 7.37e-09 c.69.1.6 34656 1azwA 313 8.85e-09 c.69.1.7 34658 1u2eA 289 9.40e-09 1uk8A 282 1.68e-08 c.69.1.10 107907 1tqhA 247 1.82e-08 c.69.1.29 107225 1xqwA 293 2.00e-08 1bn7A 294 2.35e-08 c.69.1.8 34677 1va4A 279 2.46e-08 c.69.1.12 108458 2bce 581 2.78e-08 1ehyA 294 3.23e-08 c.69.1.11 34693 1a88A 275 3.37e-08 c.69.1.12 34707 2ocgA 254 3.82e-08 3bdiA 207 4.05e-08 1womA 271 4.38e-08 1tca 317 5.23e-08 3c5vA 316 5.45e-08 1brt 277 6.07e-08 2cjpA 328 6.92e-08 1yasA 257 7.54e-08 c.69.1.20 34801 1r1dA 247 7.86e-08 c.69.1.29 96813 3bwxA 285 8.39e-08 1m33A 258 8.66e-08 c.69.1.26 78514 1broA 277 8.70e-08 c.69.1.12 34700 1zd3A 555 8.83e-08 c.108.1.2,c.69.1.11 124930,124931 1qj4A 257 8.89e-08 c.69.1.20 34796 1b6gA 310 9.69e-08 c.69.1.8 34661 1hkhA 279 1.02e-07 c.69.1.12 90628 1cv2A 296 1.14e-07 c.69.1.8 34680 1mj5A 302 1.14e-07 c.69.1.8 91285 2r11A 306 1.21e-07 1xklA 273 1.41e-07 c.69.1.20 115410 2b61A 377 1.48e-07 2e3jA 356 1.54e-07 2qjwA 176 1.68e-07 1zoiA 276 1.84e-07 1r3dA 264 2.91e-07 c.69.1.35 111680 1mnaA 298 3.07e-07 c.69.1.22 79322 2psdA 318 3.75e-07 2veoA 441 3.90e-07 2ogtA 498 4.01e-07 2rhwA 283 4.04e-07 2yysA 286 4.22e-07 2qmqA 286 4.54e-07 2qruA 274 4.72e-07 1y37A 304 4.87e-07 2pujA 286 5.02e-07 2og1A 286 5.08e-07 2puhA 286 5.41e-07 1a8qA 274 5.70e-07 c.69.1.12 34702 2h7cA 542 6.47e-07 c.69.1.1 136207 3bf7A 255 6.49e-07 1a8sA 273 6.62e-07 c.69.1.12 34710 1bu8A 452 7.64e-07 b.12.1.2,c.69.1.19 23647,34795 1qo7A 394 9.26e-07 c.69.1.11 34697 3bdvA 191 9.66e-07 1tcaA 317 1.02e-06 c.69.1.17 34726 1gpl 432 1.10e-06 1lnsA 763 1.15e-06 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1uxoA 192 1.42e-06 c.69.1.31 108121 1ei9A 279 1.43e-06 c.69.1.13 34713 2pl5A 366 1.46e-06 2qvbA 297 1.62e-06 2o2iA 300 2.26e-06 1jmkC 230 2.42e-06 c.69.1.22 71747 1brtA 277 3.03e-06 c.69.1.12 34699 2rauA 354 3.39e-06 2qs9A 194 4.41e-06 2q0xA 335 6.15e-06 1ys1X 320 6.17e-06 1pjaA 302 6.70e-06 c.69.1.13 94758 2hfkA 319 9.60e-06 2cb9A 244 1.14e-05 1hplA 449 1.20e-05 b.12.1.2,c.69.1.19 23639,34787 1cvl 319 1.63e-05 1qlwA 328 2.04e-05 c.69.1.15 34722 2bceA 585 3.79e-05 c.69.1.1 34625 1cvlA 319 4.58e-05 c.69.1.18 34786 1thgA 544 4.72e-05 c.69.1.17 34763 3bixA 574 5.69e-05 1ac5 483 0.000163 2d80A 318 0.000173 1ivyA 452 0.000212 c.69.1.5 34654 1ac5A 483 0.000213 c.69.1.5 34653 2px6A 316 0.000214 2d81A 318 0.000466 1ispA 181 0.001109 c.69.1.18 76778 1i6wA 181 0.003925 c.69.1.18 61859 1tibA 269 0.007358 c.69.1.17 34738 1thtA 305 0.02139 c.69.1.13 34711 1gt6A 269 0.02691 c.69.1.17 76342 3tglA 269 0.02696 c.69.1.17 34733 1uwcA 261 0.04377 c.69.1.17 100101 2bjhA 260 0.04692 2z5gA 387 0.06362 1tib 269 0.08807 2dsnA 387 0.1235 1cex 214 0.3361 1cexA 214 0.3989 c.69.1.30 31285 2oryA 346 0.6874 1ku0A 388 2.908 c.69.1.18 72994 2czqA 205 4.601 1g0cA 364 5.805 c.1.8.3 60165 1whtA 256 6.975 c.69.1.5 34646 1e9lA 377 12.18 c.1.8.5,d.26.3.1 59395,59396 1pswA 348 13.12 c.87.1.7 88287 1whsA 255 14.03 c.69.1.5 34649 2csuA 457 14.62 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vf8A 377 14.76 c.1.8.5,d.26.3.1 120029,120030 1qnrA 344 15.43 c.1.8.3 28834 1yb0A 159 15.62 d.118.1.1 122865 3bq9A 460 16.31 1eceA 358 17.30 c.1.8.3 28813 1wb0A 445 17.67 c.1.8.5,d.26.3.1 120825,120826 2pmbA 462 18.31 2c2nA 339 18.38 1v6tA 255 19.18 c.6.2.5 113550 1ceo 343 19.19 1hjxA 362 22.98 c.1.8.5,d.26.3.1 83512,83513 1hkkA 364 23.55 c.1.8.5,d.26.3.1 90634,90635 1vflA 356 26.84 c.1.9.1 120041 2ejaA 338 27.09 1m22A 503 28.24 c.117.1.1 78464 1qgoA 264 28.39 c.92.1.2 35596 1owqA 361 28.90 c.1.8.5,d.26.3.1 104041,104042 2btoA 473 29.43 2hjpA 290 29.73 2f9iA 327 31.43 1g66A 207 31.71 c.69.1.30 31329 1ll7A 392 32.45 c.1.8.5,d.26.3.1 78085,78086 2qj8A 332 32.48 2qtwB 546 33.12 2dskA 311 33.37 1jndA 420 34.22 c.1.8.5,d.26.3.1 71757,71758 2bv9A 290 35.46 c.1.8.3 129242 2df8A 325 35.51 1itxA 419 36.49 c.1.8.5,d.26.3.1 71425,71426 2dfaA 250 37.62 c.6.2.5 131469 2pqmA 343 38.58 3co4A 312 39.02 1bfd 528 39.07 1c93A 265 39.36 c.1.8.5 28998 2bfgA 503 41.50 b.71.1.2,c.1.8.3 128423,128424 2rkqA 169 41.52 1fsz 372 41.88 1fmjA 351 41.99 c.37.1.5 59879 1z7yA 322 42.07 c.79.1.1 124679 1eqcA 394 43.66 c.1.8.3 28811 2dri 271 44.65 2cuyA 305 45.01 2cksA 306 45.25 3c8uA 208 45.75 1ad4A 266 48.25 c.1.21.1 29670 2h1yA 321 49.07 1d2kA 392 50.52 c.1.8.5,d.26.3.1 29008,38442 1w9pA 433 51.39 c.1.8.5,d.26.3.1 114412,114413 2f6kA 307 51.57 c.1.9.15 133047 1kvkA 395 52.87 d.14.1.5,d.58.26.3 73060,73061 1k47A 337 53.55 d.14.1.5,d.58.26.4 72040,72041 2d4wA 504 54.02 1jpkA 388 56.99 c.1.22.1 67026 2h00A 254 57.27 c.66.1.54 135925 1cjcA 460 58.75 c.3.1.1,c.4.1.1 30319,30604 2liv 344 61.62 1rh9A 373 62.37 c.1.8.3 118773 1whtB 153 62.39 1vmeA 410 65.54 c.23.5.1,d.157.1.3 108893,108894 1ofuA 320 66.84 c.32.1.1,d.79.2.1 86972,86973 1mf7A 194 67.77 c.62.1.1 84937 1yw4A 341 68.87 c.56.5.7 124131 1f74A 293 69.02 c.1.10.1 29079 3clmA 352 69.03 1whsB 153 70.19 1ars 396 71.21 1bg4A 302 71.61 c.1.8.3 28806 2o14A 375 71.69 2oogA 287 71.77 2jg2A 422 72.35 2a3nA 355 73.47 1nijA 318 74.45 c.37.1.10,d.237.1.1 85741,85742 2ax4A 198 74.80 1edtA 271 75.69 c.1.8.5 28993 2jfkA 433 76.62 2amlA 373 77.07 1kngA 156 77.99 c.47.1.10 72777 1gadO 330 79.24 c.2.1.3,d.81.1.1 29950,39865 1eziA 228 79.87 c.68.1.13 34512 1qh8B 519 79.95 c.92.2.3 35634 1uf3A 228 80.39 d.159.1.6 99317 1yt8A 539 82.56 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1goiA 499 83.45 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1j33A 335 83.72 c.39.1.1 77069 1ceoA 343 84.72 c.1.8.3 28808 1xyzA 347 85.00 c.1.8.3 28804 1oi7A 288 88.16 c.2.1.8,c.23.4.1 87049,87050 1jubA 311 88.93 c.1.4.1 90908