# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.64e-19 2z3zA 706 6.15e-19 2hu5A 582 1.28e-18 b.69.7.2,c.69.1.33 136763,136764 2qm0A 275 1.05e-17 1xfdA 723 1.12e-17 b.70.3.1,c.69.1.24 115251,115252 1orvA 728 1.81e-17 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 3.42e-17 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 3.88e-17 b.69.7.1,c.69.1.4 76596,76597 2uz0A 263 1.45e-16 1o6gA 710 1.86e-16 b.69.7.1,c.69.1.4 81087,81088 2bklA 695 2.07e-16 1wb4A 297 2.67e-16 c.69.1.2 120827 1yr2A 741 3.90e-16 3c8dA 403 7.64e-16 2jbwA 386 1.04e-15 2r8bA 251 1.12e-15 2b20A 403 1.28e-15 b.1.18.20,c.69.1.2 127685,127686 1l7aA 318 1.56e-15 c.69.1.25 77772 1pv1A 299 1.57e-15 c.69.1.34 111639 2gzsA 278 1.71e-15 1f0nA 285 2.28e-15 c.69.1.3 34636 2i3dA 249 2.59e-15 3b5eA 223 2.59e-15 1vlqA 337 4.45e-15 c.69.1.25 108848 1zi8A 236 6.69e-15 1jjfA 268 9.86e-15 c.69.1.2 66765 2o2gA 223 1.08e-14 1din 236 1.14e-14 1jfrA 262 1.55e-14 c.69.1.16 34724 1fj2A 232 1.89e-14 c.69.1.14 34720 1ycdA 243 2.10e-14 2fx5A 258 2.11e-14 1lzlA 323 2.80e-14 c.69.1.2 78306 2fukA 220 8.48e-14 1mpxA 615 1.38e-13 b.18.1.13,c.69.1.21 85041,85042 1r88A 280 1.62e-13 c.69.1.3 97219 3bxpA 277 2.17e-13 1u4nA 310 2.19e-13 c.69.1.2 113021 1p0iA 529 2.43e-13 c.69.1.1 93867 1ufoA 238 2.45e-13 c.69.1.27 99344 1thg 544 2.77e-13 1ea5A 537 2.90e-13 c.69.1.1 34592 1auoA 218 3.50e-13 c.69.1.14 34716 1dqzA 280 4.21e-13 c.69.1.3 34638 1llfA 534 5.70e-13 c.69.1.17 78094 1qe3A 489 5.99e-13 c.69.1.1 34630 1jjiA 311 6.78e-13 c.69.1.2 66766 1cleA 534 1.01e-12 c.69.1.17 34771 1vkhA 273 1.47e-12 c.69.1.32 108662 2hdwA 367 1.53e-12 2pblA 262 3.74e-12 1ukcA 522 5.54e-12 c.69.1.17 107911 1ju3A 583 1.28e-11 b.18.1.13,c.69.1.21 67300,67301 2bce 581 3.46e-11 1wm1A 317 4.74e-11 c.69.1.7 109405 2hm7A 310 4.89e-11 1k8qA 377 1.02e-10 c.69.1.6 72177 1jkmA 358 1.09e-10 c.69.1.2 34633 1imjA 210 1.34e-10 c.69.1.23 71246 1qtrA 317 1.61e-10 c.69.1.7 34660 1hlgA 371 1.84e-10 c.69.1.6 34656 1q0rA 298 2.06e-10 c.69.1.28 95508 1b6g 310 2.06e-10 2o7rA 338 3.43e-10 1ede 310 3.64e-10 1mtzA 293 4.33e-10 c.69.1.7 79467 1j1iA 296 4.37e-10 c.69.1.10 83977 1azwA 313 4.50e-10 c.69.1.7 34658 1u2eA 289 4.51e-10 1c4xA 285 5.12e-10 c.69.1.10 34684 1uk8A 282 6.30e-10 c.69.1.10 107907 1bn7A 294 1.03e-09 c.69.1.8 34677 1va4A 279 1.13e-09 c.69.1.12 108458 1tqhA 247 1.19e-09 c.69.1.29 107225 1lnsA 763 1.23e-09 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1xqwA 293 2.09e-09 2ocgA 254 2.42e-09 1a88A 275 2.99e-09 c.69.1.12 34707 1brt 277 3.17e-09 1ehyA 294 3.28e-09 c.69.1.11 34693 1r1dA 247 3.32e-09 c.69.1.29 96813 2h7cA 542 3.98e-09 c.69.1.1 136207 2cjpA 328 4.09e-09 1broA 277 4.94e-09 c.69.1.12 34700 2veoA 441 5.04e-09 3bdiA 207 5.17e-09 3c5vA 316 5.96e-09 1womA 271 6.34e-09 1zd3A 555 6.35e-09 c.108.1.2,c.69.1.11 124930,124931 1hkhA 279 6.52e-09 c.69.1.12 90628 1m33A 258 7.57e-09 c.69.1.26 78514 1cv2A 296 7.97e-09 c.69.1.8 34680 2r11A 306 8.18e-09 1mj5A 302 9.30e-09 c.69.1.8 91285 1zoiA 276 9.35e-09 1yasA 257 9.93e-09 c.69.1.20 34801 3bwxA 285 1.10e-08 1b6gA 310 1.27e-08 c.69.1.8 34661 1qj4A 257 1.47e-08 c.69.1.20 34796 2e3jA 356 1.50e-08 1xklA 273 2.12e-08 c.69.1.20 115410 1tca 317 2.13e-08 2qjwA 176 2.17e-08 2ogtA 498 2.42e-08 2psdA 318 2.53e-08 1a8sA 273 2.95e-08 c.69.1.12 34710 2rhwA 283 2.99e-08 2b61A 377 3.13e-08 2yysA 286 3.38e-08 1a8qA 274 3.50e-08 c.69.1.12 34702 2puhA 286 3.63e-08 2og1A 286 4.05e-08 1r3dA 264 4.66e-08 c.69.1.35 111680 2pujA 286 4.93e-08 2qmqA 286 5.00e-08 1brtA 277 6.62e-08 c.69.1.12 34699 1uxoA 192 7.23e-08 c.69.1.31 108121 1y37A 304 7.23e-08 1mnaA 298 8.32e-08 c.69.1.22 79322 2qruA 274 8.83e-08 2qvbA 297 1.29e-07 2o2iA 300 1.35e-07 3bf7A 255 1.36e-07 1qo7A 394 1.59e-07 c.69.1.11 34697 1tcaA 317 1.66e-07 c.69.1.17 34726 1ei9A 279 2.09e-07 c.69.1.13 34713 1bu8A 452 3.24e-07 b.12.1.2,c.69.1.19 23647,34795 2pl5A 366 3.31e-07 2rauA 354 3.91e-07 2qs9A 194 4.11e-07 1pjaA 302 5.26e-07 c.69.1.13 94758 3bdvA 191 6.01e-07 1gpl 432 6.13e-07 1thgA 544 9.61e-07 c.69.1.17 34763 2bceA 585 1.18e-06 c.69.1.1 34625 3bixA 574 1.18e-06 1jmkC 230 1.32e-06 c.69.1.22 71747 1qlwA 328 1.41e-06 c.69.1.15 34722 1ys1X 320 1.89e-06 1cvl 319 2.59e-06 2hfkA 319 3.17e-06 1cvlA 319 3.33e-06 c.69.1.18 34786 2cb9A 244 3.45e-06 2q0xA 335 1.07e-05 1hplA 449 1.07e-05 b.12.1.2,c.69.1.19 23639,34787 2px6A 316 2.65e-05 1ivyA 452 3.01e-05 c.69.1.5 34654 2d80A 318 3.19e-05 1ac5 483 5.34e-05 1ac5A 483 9.40e-05 c.69.1.5 34653 2d81A 318 0.000205 1ispA 181 0.000594 c.69.1.18 76778 1i6wA 181 0.001358 c.69.1.18 61859 1tibA 269 0.003608 c.69.1.17 34738 1gt6A 269 0.01203 c.69.1.17 76342 1thtA 305 0.01605 c.69.1.13 34711 1tib 269 0.01751 2bjhA 260 0.01852 3tglA 269 0.02398 c.69.1.17 34733 1uwcA 261 0.02551 c.69.1.17 100101 1cexA 214 0.03773 c.69.1.30 31285 1cex 214 0.04631 2z5gA 387 0.07735 2dsnA 387 0.2310 2oryA 346 0.3677 2czqA 205 0.8954 1ku0A 388 1.685 c.69.1.18 72994 1g0cA 364 1.837 c.1.8.3 60165 2csuA 457 2.002 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1d2kA 392 3.197 c.1.8.5,d.26.3.1 29008,38442 1ll7A 392 3.758 c.1.8.5,d.26.3.1 78085,78086 1whsA 255 4.843 c.69.1.5 34649 1whtA 256 4.875 c.69.1.5 34646 2bfgA 503 5.792 b.71.1.2,c.1.8.3 128423,128424 1hkkA 364 6.675 c.1.8.5,d.26.3.1 90634,90635 1jndA 420 9.749 c.1.8.5,d.26.3.1 71757,71758 1whtB 153 12.12 1wb0A 445 12.97 c.1.8.5,d.26.3.1 120825,120826 1whsB 153 13.88 2bv9A 290 14.48 c.1.8.3 129242 1uuqA 440 15.53 c.1.8.3 100015 1yb0A 159 16.90 d.118.1.1 122865 2cksA 306 17.19 1bg4A 302 18.48 c.1.8.3 28806 1e9lA 377 18.56 c.1.8.5,d.26.3.1 59395,59396 1w9pA 433 19.16 c.1.8.5,d.26.3.1 114412,114413 1vf8A 377 20.52 c.1.8.5,d.26.3.1 120029,120030 1hjxA 362 20.80 c.1.8.5,d.26.3.1 83512,83513 1vflA 356 20.87 c.1.9.1 120041 1owqA 361 21.01 c.1.8.5,d.26.3.1 104041,104042 1ceo 343 22.19 1eudA 311 23.32 c.2.1.8,c.23.4.1 30312,31140 1uf3A 228 24.35 d.159.1.6 99317 1edg 380 25.13 1xyzA 347 25.14 c.1.8.3 28804 1ng4A 390 26.58 c.3.1.2,d.16.1.3 85666,85667 1j0aA 325 28.24 c.79.1.1 83871 1qgoA 264 29.05 c.92.1.2 35596 2b0mA 393 30.18 c.1.4.1 127644 2f6kA 307 30.99 c.1.9.15 133047 1edqA 540 31.18 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1eceA 358 31.26 c.1.8.3 28813 1ryiA 382 31.50 c.3.1.2,d.16.1.3 118813,118814 1qe5A 266 32.97 c.56.2.1 33784 1kfwA 435 33.91 c.1.8.5,d.26.3.1 77376,77377 1oi7A 288 34.00 c.2.1.8,c.23.4.1 87049,87050 1itxA 419 34.13 c.1.8.5,d.26.3.1 71425,71426 1v7cA 351 36.39 c.79.1.1 100446 2qtwB 546 36.85 1p5jA 372 37.26 c.79.1.1 104067 1jz8A 1023 38.28 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1z7yA 322 38.63 c.79.1.1 124679 1ceoA 343 38.99 c.1.8.3 28808 2btoA 473 39.10 1m22A 503 39.76 c.117.1.1 78464 1qnrA 344 41.03 c.1.8.3 28834 1g66A 207 41.06 c.69.1.30 31329 7a3hA 303 41.57 c.1.8.3 28817 2q4zA 312 42.13 1nijA 318 43.70 c.37.1.10,d.237.1.1 85741,85742 1n82A 331 47.40 c.1.8.3 91703 2rkqA 169 47.70 1rxyA 253 47.77 c.56.2.1 98065 2c2nA 339 49.31 1rh9A 373 49.66 c.1.8.3 118773 1vbuA 328 49.96 c.1.8.3 119963 2liv 344 51.04 3b9eA 584 53.60 2c0hA 353 54.32 c.1.8.3 129594 2ozlA 365 55.58 1z7wA 322 57.86 c.79.1.1 124674 1vhwA 253 58.42 c.56.2.1 100706 1oheA 348 58.62 c.45.1.1,c.45.1.1 87013,87014 3ctpA 330 59.27 1yn9A 169 59.38 1k6xA 352 60.89 c.2.1.2 68238 1c93A 265 61.46 c.1.8.5 28998 1ad4A 266 61.99 c.1.21.1 29670 2osxA 481 63.05 3clwA 507 63.28 2pqmA 343 63.84 2q3bA 313 64.14 1fh9A 312 64.19 c.1.8.3 28913 1f74A 293 64.55 c.1.10.1 29079 1wkyA 464 65.54 b.18.1.31,c.1.8.3 120992,120993 1to6A 371 66.01 c.141.1.1 107170 1z41A 338 66.03 c.1.4.1 124421 3co4A 312 68.53 3c3jA 384 70.52 2dvtA 327 72.00 c.1.9.15 131793 2vjxA 846 72.44 1wc3A 219 72.74 d.58.29.1 114495 1uroA 367 73.07 c.1.22.1 29675 2df8A 325 73.14 2yv1A 294 73.82 1scuA 288 74.02 c.2.1.8,c.23.4.1 30307,31135 2uz1A 563 74.46 1eqcA 394 76.17 c.1.8.3 28811 1r85A 379 76.26 c.1.8.3 104839 1ctn 540 76.80 1o58A 303 77.58 c.79.1.1 92491 2yhx 457 77.62 3c8uA 208 77.78 1q52A 314 77.82 c.14.1.3 95846 1pwhA 327 77.87 c.79.1.1 95224 1w1iE 357 78.49 c.1.9.1 109051 1yw4A 341 79.96 c.56.5.7 124131 1fpzA 212 80.06 c.45.1.1 59976 2q71A 356 80.32 1ve5A 311 80.44 c.79.1.1 120013 1f2dA 341 80.79 c.79.1.1 35298 1p9oA 313 81.71 c.72.3.1 94397 1nzyA 269 81.87 c.14.1.3 30903 1o5kA 306 82.73 c.1.10.1 92504 1ybtA 184 83.50 1es9A 232 83.61 c.23.10.3 31340 2v3gA 283 83.99 1jx6A 342 86.32 c.93.1.1 67406 2hx1A 284 86.93 1bif 469 88.54 1wvfA 520 89.10 d.58.32.1,d.145.1.1 121337,121338 1moqA 368 89.14 c.80.1.1 35302 1meoA 209 89.43 c.65.1.1 79035 1p3dA 475 89.63 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730