# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 5.55e-06 2z3zA 706 7.92e-06 2hu5A 582 1.45e-05 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 3.04e-05 b.70.3.1,c.69.1.24 87354,87355 2bklA 695 0.000109 2jbwA 386 0.000159 2i3dA 249 0.000180 1xfdA 723 0.000208 b.70.3.1,c.69.1.24 115251,115252 1yr2A 741 0.000238 1o6gA 710 0.000245 b.69.7.1,c.69.1.4 81087,81088 1jjfA 268 0.000253 c.69.1.2 66765 1qfmA 710 0.000320 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 0.000325 b.69.7.1,c.69.1.4 76596,76597 2uz0A 263 0.000341 1l7aA 318 0.000384 c.69.1.25 77772 3b5eA 223 0.000450 2qm0A 275 0.000485 2gzsA 278 0.000524 1f0nA 285 0.000547 c.69.1.3 34636 2o2gA 223 0.000556 1dqzA 280 0.000606 c.69.1.3 34638 1r88A 280 0.000719 c.69.1.3 97219 2hdwA 367 0.000721 3bxpA 277 0.000749 1vlqA 337 0.000776 c.69.1.25 108848 1jfrA 262 0.000782 c.69.1.16 34724 1pv1A 299 0.000783 c.69.1.34 111639 2r8bA 251 0.000799 1din 236 0.000863 3c8dA 403 0.001045 1zi8A 236 0.001135 1jjiA 311 0.001196 c.69.1.2 66766 1lzlA 323 0.001201 c.69.1.2 78306 1u4nA 310 0.001565 c.69.1.2 113021 1auoA 218 0.001634 c.69.1.14 34716 2fukA 220 0.001805 1q0rA 298 0.002164 c.69.1.28 95508 2o7rA 338 0.002252 2b20A 403 0.002306 b.1.18.20,c.69.1.2 127685,127686 1fj2A 232 0.002342 c.69.1.14 34720 1hlgA 371 0.002402 c.69.1.6 34656 2fx5A 258 0.002772 2hm7A 310 0.003670 1a88A 275 0.004120 c.69.1.12 34707 3bdiA 207 0.004263 1uk8A 282 0.004344 c.69.1.10 107907 1j1iA 296 0.004510 c.69.1.10 83977 1jkmA 358 0.004517 c.69.1.2 34633 1ufoA 238 0.004618 c.69.1.27 99344 1mpxA 615 0.004935 b.18.1.13,c.69.1.21 85041,85042 1va4A 279 0.005018 c.69.1.12 108458 1broA 277 0.005196 c.69.1.12 34700 1u2eA 289 0.005291 1wb4A 297 0.005992 c.69.1.2 120827 1c4xA 285 0.006221 c.69.1.10 34684 1a8qA 274 0.006593 c.69.1.12 34702 1ju3A 583 0.006651 b.18.1.13,c.69.1.21 67300,67301 1wm1A 317 0.006764 c.69.1.7 109405 1hkhA 279 0.007080 c.69.1.12 90628 1k8qA 377 0.007121 c.69.1.6 72177 1brt 277 0.007183 1a8sA 273 0.007924 c.69.1.12 34710 2r11A 306 0.007952 1qtrA 317 0.007958 c.69.1.7 34660 2og1A 286 0.007959 2ocgA 254 0.008382 1zoiA 276 0.008560 3bwxA 285 0.008612 2rhwA 283 0.008655 1vkhA 273 0.009206 c.69.1.32 108662 2pujA 286 0.009246 2puhA 286 0.009353 1mtzA 293 0.01009 c.69.1.7 79467 1ycdA 243 0.01059 2yysA 286 0.01146 2e3jA 356 0.01198 1imjA 210 0.01251 c.69.1.23 71246 1b6g 310 0.01419 1azwA 313 0.01573 c.69.1.7 34658 2cjpA 328 0.01645 1ede 310 0.01649 1brtA 277 0.01696 c.69.1.12 34699 1ehyA 294 0.01707 c.69.1.11 34693 1bn7A 294 0.01779 c.69.1.8 34677 1xqwA 293 0.01827 2qmqA 286 0.01999 1m33A 258 0.02525 c.69.1.26 78514 1b6gA 310 0.02534 c.69.1.8 34661 2pblA 262 0.02609 1tqhA 247 0.02625 c.69.1.29 107225 1y37A 304 0.02751 1mj5A 302 0.03195 c.69.1.8 91285 1r1dA 247 0.03421 c.69.1.29 96813 1qe3A 489 0.03496 c.69.1.1 34630 1womA 271 0.03628 2b61A 377 0.03700 2veoA 441 0.03814 1cv2A 296 0.03834 c.69.1.8 34680 2o2iA 300 0.03992 1zd3A 555 0.04201 c.108.1.2,c.69.1.11 124930,124931 1ea5A 537 0.04375 c.69.1.1 34592 1xklA 273 0.04440 c.69.1.20 115410 3bf7A 255 0.04443 2qvbA 297 0.04483 1qo7A 394 0.05084 c.69.1.11 34697 1p0iA 529 0.05732 c.69.1.1 93867 2pl5A 366 0.05947 2psdA 318 0.06126 2qjwA 176 0.06811 1ukcA 522 0.07037 c.69.1.17 107911 3c5vA 316 0.07565 1uxoA 192 0.08437 c.69.1.31 108121 2h7cA 542 0.08975 c.69.1.1 136207 1r3dA 264 0.09093 c.69.1.35 111680 1yasA 257 0.09180 c.69.1.20 34801 1thg 544 0.1159 1llfA 534 0.1203 c.69.1.17 78094 2q0xA 335 0.1211 2qruA 274 0.1267 3bixA 574 0.1433 1qj4A 257 0.1484 c.69.1.20 34796 2qs9A 194 0.1508 1cleA 534 0.1593 c.69.1.17 34771 1ac5 483 0.1700 1tca 317 0.1819 1ac5A 483 0.1935 c.69.1.5 34653 1ivyA 452 0.2142 c.69.1.5 34654 1qlwA 328 0.2258 c.69.1.15 34722 2bceA 585 0.2571 c.69.1.1 34625 1ei9A 279 0.2903 c.69.1.13 34713 3bdvA 191 0.3297 2bce 581 0.3564 1tcaA 317 0.3838 c.69.1.17 34726 2rauA 354 0.3844 1thgA 544 0.3957 c.69.1.17 34763 2ogtA 498 0.4731 1thtA 305 0.5921 c.69.1.13 34711 1cvl 319 0.6717 1ys1X 320 0.6801 1jmkC 230 0.7603 c.69.1.22 71747 1pjaA 302 0.8303 c.69.1.13 94758 1cvlA 319 0.8745 c.69.1.18 34786 2cb9A 244 0.9509 1lnsA 763 0.9831 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mnaA 298 0.9844 c.69.1.22 79322 1i6wA 181 1.243 c.69.1.18 61859 1ispA 181 1.542 c.69.1.18 76778 1gpl 432 1.670 2d80A 318 1.990 1cex 214 2.352 2hfkA 319 2.425 1bu8A 452 2.458 b.12.1.2,c.69.1.19 23647,34795 1cexA 214 3.254 c.69.1.30 31285 1hplA 449 3.484 b.12.1.2,c.69.1.19 23639,34787 2px6A 316 3.884 2d81A 318 4.737 1whsA 255 5.465 c.69.1.5 34649 1whtA 256 6.005 c.69.1.5 34646 2czqA 205 8.411 1g66A 207 8.771 c.69.1.30 31329 1tibA 269 10.85 c.69.1.17 34738 1tib 269 16.64 1xjo 284 16.75 3tglA 269 17.22 c.69.1.17 34733 2z5gA 387 23.30 1gt6A 269 29.69 c.69.1.17 76342 1qq9A 284 41.03 c.56.5.4 33841 2dsnA 387 41.32 1tkjA 284 42.29 c.56.5.4 119296 2oryA 346 42.67 1yw4A 341 46.79 c.56.5.7 124131 1iweA 457 48.53 c.37.1.10 71486 1bgvA 449 49.36 c.2.1.7,c.58.1.1 30217,33865 2o55A 258 50.72 2bmaA 470 53.01 1gtmA 419 55.03 c.2.1.7,c.58.1.1 30223,33871 1ku0A 388 56.13 c.69.1.18 72994 1usuA 260 57.78 d.14.1.8 99885 1hwxA 501 59.00 c.2.1.7,c.58.1.1 30250,33898 1n7hA 381 61.48 c.2.1.2 80250 1vkmA 297 63.17 c.138.1.1 108670 1hrdA 449 66.32 c.2.1.7,c.58.1.1 30219,33867 1w1iE 357 68.60 c.1.9.1 109051 2dvtA 327 70.29 c.1.9.15 131793 1h0hA 977 71.60 b.52.2.2,c.81.1.1 76435,76436 1t2aA 375 71.77 c.2.1.2 99078 1g0cA 364 71.83 c.1.8.3 60165 3biyA 380 72.01 1b26A 416 72.20 c.2.1.7,c.58.1.1 30232,33880 1dtdA 303 73.83 c.56.5.1 33823 1to6A 371 74.05 c.141.1.1 107170 1z5rA 306 74.05 c.56.5.1 124488 1uwcA 261 75.32 c.69.1.17 100101 2gruA 368 75.58 2c5aA 379 75.68 c.2.1.2 129894 2nacA 393 78.59 c.2.1.4,c.23.12.1 30088,31348 1zy9A 564 79.12 b.30.5.11,c.1.8.13 125813,125814 1vljA 407 79.20 e.22.1.2 108832 1zuwA 272 83.24 1txvB 440 83.29 b.1.15.1,c.62.1.1,g.16.2.1 112784,112785,112786 2pi1A 334 83.70 3b2yA 275 83.83 1fjhA 257 86.10 c.2.1.2 29870 1j96A 323 86.90 c.1.7.1 71616 2bcoA 350 87.00 c.56.5.7 128302 2yvdA 431 89.71