# List of top-scoring protein chains for T0412.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yspA	181	1.37e-17		
1mkmA	249	1.25e-16	a.4.5.33,d.110.2.2	79242,79243
1td5A	202	2.97e-15	d.110.2.2	106767
2o99A	182	2.98e-15	d.110.2.2	138952
1tf1A	198	2.27e-14	d.110.2.2	106826
2ia2A	265	1.72e-13		
1ysqA	193	2.24e-13		
2g7uA	257	6.47e-13		
2o0yA	260	3.50e-11		
3bjnA	165	1.89e-10		
1y3hA	307	26.46		
1u0tA	307	26.46	e.52.1.1	107567
2pjhB	193	35.54		
2dgyA	111	62.68		
2v5hA	321	77.13		
1dvwA	18	80.71	j.109.1.1	90442
1j49A	333	85.09	c.2.1.4,c.23.12.1	71498,71499
1j4aA	333	86.10	c.2.1.4,c.23.12.1	71502,71503
1yt3A	375	88.93	a.60.8.3,a.60.8.3,c.55.3.5	123992,123993,123994