# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	3.85e-18		
2ia2A	265	4.24e-18		
1tf1A	198	7.32e-18	d.110.2.2	106826
1mkmA	249	1.33e-17	a.4.5.33,d.110.2.2	79242,79243
2o0yA	260	1.76e-17		
1yspA	181	3.11e-17		
2o99A	182	4.56e-17	d.110.2.2	138952
1ysqA	193	5.24e-17		
1td5A	202	5.86e-17	d.110.2.2	106767
3bjnA	165	1.06e-16		
2qybA	181	20.29		
1itpA	77	35.58	d.58.3.2	66371
2gv5A	161	35.77		
1u08A	386	40.38	c.67.1.1	107543
1twuA	139	46.47	d.32.1.8	107413
2i6jA	161	49.37		
2vjqA	428	51.95		
1wouA	123	52.60	c.47.1.16	109471
1kllA	130	54.88	d.32.1.2	72720
1v9wA	130	56.00	c.47.1.16	108453
1oaqL	120	61.49	b.1.1.1	92708
1iloA	77	62.86	c.47.1.1	66205
1flrL	219	76.04	b.1.1.1,b.1.1.2	19904,20998
1k6kA	143	78.47	a.174.1.1	77274
1xk7A	408	78.96	c.123.1.1	122071
2g3aA	152	78.96	d.108.1.1	134557
2afbA	351	81.25	c.72.1.1	126674
2p25A	126	81.30		
3cmnA	372	81.83		
2b02A	119	83.32		
1z47A	355	83.41		
1mjuL	219	85.99	b.1.1.1,b.1.1.2	91304,91305
1w7lA	422	86.14	c.67.1.1	109226