# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	5.77e-18		
2ia2A	265	9.28e-18		
1tf1A	198	1.36e-17	d.110.2.2	106826
2o0yA	260	1.99e-17		
1mkmA	249	2.09e-17	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	3.86e-17		
3bjnA	165	6.79e-17		
1ysqA	193	9.43e-17		
2o99A	182	9.55e-17	d.110.2.2	138952
1td5A	202	1.29e-16	d.110.2.2	106767
2gv5A	161	12.03		
2qybA	181	13.77		
1u08A	386	16.18	c.67.1.1	107543
2i6jA	161	23.70		
1m7yA	435	28.73	c.67.1.4	78761
1wouA	123	30.06	c.47.1.16	109471
1v9wA	130	34.59	c.47.1.16	108453
1k6kA	143	37.20	a.174.1.1	77274
1w7lA	422	41.77	c.67.1.1	109226
1iloA	77	43.00	c.47.1.1	66205
1wy9A	147	48.63		
1itpA	77	48.74	d.58.3.2	66371
1kllA	130	48.81	d.32.1.2	72720
1oxxK	353	58.33	b.40.6.3,c.37.1.12	93715,93716
1l2tA	235	59.09	c.37.1.12	73514
2d58A	107	59.75		
1ithA	141	61.61	a.1.1.2	15623
1xk7A	408	64.65	c.123.1.1	122071
1nw2A	105	65.22	c.47.1.1	92215
1ynuA	473	69.03	c.67.1.4	123762
1flrL	219	69.18	b.1.1.1,b.1.1.2	19904,20998
1g291	372	70.25		
2g3aA	152	70.91	d.108.1.1	134557
2yzuA	109	77.23		
1a7j	290	77.61		
2absA	383	77.66	c.72.1.1	126534
2afbA	351	77.74	c.72.1.1	126674
1thxA	115	78.00	c.47.1.1	32732
2p25A	126	78.18		
2b02A	119	78.70		
1fo5A	85	79.33	c.47.1.1	59922
2qmlA	198	79.92		
2a2lA	145	80.52	d.110.9.1	126035
2vglS	142	81.44		
3cmnA	372	83.27		
2cvkA	110	83.85		
1oxsC	353	86.02	b.40.6.3,c.37.1.12	87519,87520
1z47A	355	87.80		
1rdzA	337	88.26	e.7.1.1	42882
1twuA	139	88.54	d.32.1.8	107413
1mjuL	219	89.37	b.1.1.1,b.1.1.2	91304,91305