# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tf1A	198	2.78e-21	d.110.2.2	106826
2ia2A	265	3.54e-21		
1mkmA	249	9.64e-21	a.4.5.33,d.110.2.2	79242,79243
2g7uA	257	1.89e-20		
1yspA	181	2.22e-20		
1td5A	202	2.89e-20	d.110.2.2	106767
2o0yA	260	3.23e-20		
3bjnA	165	3.91e-20		
2o99A	182	4.07e-20	d.110.2.2	138952
1ysqA	193	5.43e-20		
1k6kA	143	8.380	a.174.1.1	77274
1n4qB	377	13.29	a.102.4.3	91636
2qybA	181	15.74		
1oxsC	353	18.73	b.40.6.3,c.37.1.12	87519,87520
1oxxK	353	20.25	b.40.6.3,c.37.1.12	93715,93716
2d58A	107	24.01		
1v9wA	130	27.45	c.47.1.16	108453
1topA	162	28.07	a.39.1.5	17223
1z47A	355	33.28		
1omrA	201	35.42	a.39.1.5	93349
1s6cA	183	37.16	a.39.1.5	98594
1svdM	110	40.69	d.73.1.1	119059
1l2tA	235	40.94	c.37.1.12	73514
2trxA	108	42.21	c.47.1.1	32719
1wddS	128	42.53	d.73.1.1	114532
2i4aA	107	42.78		
1fb6A	105	43.63	c.47.1.1	32739
1xfxO	149	44.95	a.39.1.5	121955
1s1eA	224	46.05	a.39.1.5	112007
1xk7A	408	46.87	c.123.1.1	122071
1ir21	140	48.74		
2vjqA	428	48.99		
1yo5C	97	49.08	a.4.5.21	123768
1wy9A	147	49.64		
2nn4A	72	49.65		
1a2xA	159	50.36	a.39.1.5	17251
2yzuA	109	51.04		
1x74A	360	51.04	c.123.1.1	121771
1nw2A	105	53.84	c.47.1.1	92215
1dpgA	485	54.37	c.2.1.3,d.81.1.5	30074,39989
1rblI	109	54.57	d.73.1.1	118599
2vluA	122	54.59		
1pvvA	315	54.71	c.78.1.1,c.78.1.1	95190,95191
1rscI	111	56.14	d.73.1.1	118620
1ep8A	112	56.23	c.47.1.1	64907
1qk8A	146	57.49	c.47.1.10	33061
1p0zA	131	57.58	d.110.6.1	93882
3rubS	123	57.67	d.73.1.1	39616
1gk8I	140	58.60	d.73.1.1	65242
1e5pA	151	59.27	b.60.1.1	59272
1ggzA	148	59.65	a.39.1.5	70176
1rec	201	60.75		
2h5eA	529	60.80		
1jj7A	260	61.43	c.37.1.12	63114
3cpxA	321	62.03		
1othA	321	62.04	c.78.1.1,c.78.1.1	35260,35261
1sknP	92	63.81	a.37.1.1	17127
1wmjA	130	64.14		
1ncx	162	65.43		
1rxqA	178	65.95	a.213.1.1	105118
2gv5A	161	66.23		
1thxA	115	69.44	c.47.1.1	32732
1mc0A	368	71.28	d.110.2.1,d.110.2.1	78937,78938
2ixeA	271	74.33		
1g8iA	190	74.64	a.39.1.5	60363
2iwtA	125	75.26		
2nq2C	253	75.63		
2ay1A	394	76.67	c.67.1.1	34357
2oe3A	114	77.05		
1o0iA	138	77.78	d.38.1.5	86532
1wlzA	105	77.97	a.39.1.7	121024
1pqnA	127	79.43	c.47.1.8	95025
1dbyA	107	82.56	c.47.1.1	32734
1ykdA	398	84.48		
2pptA	155	86.61		
2i6jA	161	87.40		
1ni9A	338	87.45	e.7.1.2	85739
1hynP	379	89.65	d.112.1.2	61408