# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tf1A	198	9.57e-19	d.110.2.2	106826
2g7uA	257	1.23e-18		
2ia2A	265	1.77e-18		
2o0yA	260	2.88e-18		
1mkmA	249	3.76e-18	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	6.41e-18		
2o99A	182	6.41e-18	d.110.2.2	138952
3bjnA	165	1.47e-17		
1ysqA	193	1.56e-17		
1td5A	202	1.69e-17	d.110.2.2	106767
2absA	383	18.99	c.72.1.1	126534
2qybA	181	22.83		
1iloA	77	31.93	c.47.1.1	66205
2gv5A	161	33.15		
2p25A	126	40.01		
1u08A	386	40.45	c.67.1.1	107543
2i6jA	161	40.83		
1wouA	123	45.08	c.47.1.16	109471
2b02A	119	52.55		
1itpA	77	61.75	d.58.3.2	66371
2g3aA	152	62.77	d.108.1.1	134557
1flrL	219	62.88	b.1.1.1,b.1.1.2	19904,20998
2i4aA	107	65.43		
1qqeA	292	65.98	a.118.8.1	19210
1oaqL	120	68.17	b.1.1.1	92708
1ep8A	112	69.76	c.47.1.1	64907
1mjuL	219	72.53	b.1.1.1,b.1.1.2	91304,91305
1thxA	115	73.24	c.47.1.1	32732
1k6kA	143	76.50	a.174.1.1	77274
1v9wA	130	76.57	c.47.1.16	108453
2f0xA	148	76.63	d.38.1.5	132673
3cpxA	321	80.38		
2afbA	351	81.68	c.72.1.1	126674
2yzuA	109	82.59		
1fb6A	105	83.01	c.47.1.1	32739
2trxA	108	83.12	c.47.1.1	32719
2uzhA	165	88.16		
1ir21	140	89.89