# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 4.43e-28 1tf1A 198 5.91e-27 d.110.2.2 106826 2g7uA 257 8.06e-27 2o99A 182 3.84e-26 d.110.2.2 138952 1yspA 181 4.66e-26 1td5A 202 5.35e-26 d.110.2.2 106767 2o0yA 260 5.92e-26 1mkmA 249 6.42e-26 a.4.5.33,d.110.2.2 79242,79243 1ysqA 193 1.61e-25 3bjnA 165 2.50e-25 2absA 383 0.7675 c.72.1.1 126534 2qkpA 151 3.096 1rwiA 270 4.625 b.68.9.1 97987 2gv5A 161 4.656 2puzA 419 5.389 2oegA 505 6.321 2basA 431 6.341 c.1.33.1,d.110.6.2 128244,128245 2qybA 181 6.458 1ry6A 360 6.536 c.37.1.9 98090 2ha8A 184 7.331 3cswA 285 7.852 2afbA 351 8.097 c.72.1.1 126674 1jc4A 148 8.374 d.32.1.4 62863 1sffA 426 8.555 c.67.1.4 105482 1a2xA 159 8.649 a.39.1.5 17251 1twuA 139 8.690 d.32.1.8 107413 1lxkA 721 8.803 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1j31A 262 8.816 d.160.1.2 90808 1u08A 386 9.106 c.67.1.1 107543 1dgmA 363 9.386 c.72.1.1 34936 2vjqA 428 13.04 2cy8A 453 14.07 1rdzA 337 14.64 e.7.1.1 42882 2r78A 117 15.02 1nowA 507 15.09 c.1.8.6,d.92.2.1 85936,85937 1c4kA 730 16.14 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2i6jA 161 16.17 1sz6A 249 17.31 d.165.1.1 112171 1el4A 195 17.98 a.39.1.5 59453 1cb8A 678 18.44 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 3bwlA 126 20.21 1mc0A 368 20.73 d.110.2.1,d.110.2.1 78937,78938 2mysB 166 20.90 a.39.1.5 17308 1j4aA 333 22.63 c.2.1.4,c.23.12.1 71502,71503 1m15A 357 23.08 a.83.1.1,d.128.1.2 78368,78369 1adeA 431 24.87 c.37.1.10 32213 1exrA 148 25.21 a.39.1.5 17299 1edgA 380 25.57 c.1.8.3 28807 1m5q1 130 27.71 1zodA 433 27.83 c.67.1.4 125437 2cxaA 256 28.03 d.108.1.6 130993 1q7fA 286 29.49 b.68.9.1 96036 1j32A 388 30.30 c.67.1.1 77067 1zvkA 358 30.69 2p25A 126 31.18 1vefA 395 31.73 c.67.1.4 120018 3b2tA 311 32.94 1arhA 396 33.40 c.67.1.1 34321 2av4A 162 33.57 2eiyA 308 33.58 1wy9A 147 34.50 2ffcA 353 35.62 c.1.2.3 133378 2ganA 190 35.62 d.108.1.1 134889 2cstA 411 36.60 c.67.1.1 34273 2zc8A 369 37.34 1j6pA 418 38.02 b.92.1.4,c.1.9.9 77089,77090 2iadB 205 38.14 b.1.1.2,d.19.1.1 21640,38214 2pajA 492 38.24 1p0zA 131 39.28 d.110.6.1 93882 2haiA 576 39.71 2jejA 358 40.18 d.240.1.1,e.8.1.7 138284,138285 1o7nA 449 41.33 b.33.1.2,d.129.3.3 81162,81163 1flrL 219 41.92 b.1.1.1,b.1.1.2 19904,20998 1mpyA 307 42.78 d.32.1.3,d.32.1.3 38508,38509 1wstA 417 43.68 c.67.1.1 121244 1d0yA 761 44.80 b.34.3.1,c.37.1.9 24581,32178 2avxA 171 46.74 1oaqL 120 49.03 b.1.1.1 92708 1rlrA 761 49.37 a.98.1.1,c.7.1.2 18753,30679 1y0zA 330 49.43 b.82.2.8 116317 1oatA 439 50.71 c.67.1.4 34461 1iloA 77 51.08 c.47.1.1 66205 2vduB 450 51.34 1rwhA 757 51.91 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1fmjA 351 52.34 c.37.1.5 59879 1to6A 371 52.47 c.141.1.1 107170 1qo2A 241 53.07 c.1.2.1 28533 2qt3A 403 55.90 1cqmA 101 56.22 d.58.14.1 39321 1ap2A 113 57.30 b.1.1.1 20182 1vcvA 226 57.88 c.1.10.1 119988 1e9lA 377 58.57 c.1.8.5,d.26.3.1 59395,59396 1d0cA 444 60.32 d.174.1.1 64769 2g3aA 152 60.64 d.108.1.1 134557 2dhoA 235 62.25 1kllA 130 62.69 d.32.1.2 72720 2d58A 107 62.80 2uzhA 165 64.12 1j0mA 752 65.49 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2g2bA 150 65.60 1ba1 386 66.37 1q7lA 198 68.09 c.56.5.4 96044 1zl0A 311 68.91 c.8.10.1,c.23.16.7 125231,125232 2epjA 434 68.98 2dtvA 397 69.62 2obhA 143 71.16 1zq1C 633 71.90 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 2f6hX 419 72.06 1s3zA 165 73.29 d.108.1.1 105250 1wrvA 308 73.63 1lvl 458 73.90 1ej3A 191 73.95 a.39.1.5 17259 1bh5A 183 74.67 d.32.1.1 38476 1a6uL 108 76.63 b.1.1.1 20254 2pimA 141 76.78 1xa3A 437 76.94 c.123.1.1 115025 1ykdA 398 78.31 2f0xA 148 78.68 d.38.1.5 132673 1n4wA 504 79.17 c.3.1.2,d.16.1.1 91676,91677 2dkb 433 79.91 2an1A 292 80.15 1p1mA 406 80.90 b.92.1.4,c.1.9.9 87696,87697 1rlr 761 81.53 1jq4A 98 81.90 d.15.4.2 67083 2e7uA 424 82.69 1fgs 428 83.09 2ghsA 326 84.39 b.68.6.1 135209 1uqwA 509 84.81 c.94.1.1 99799 2h4uA 145 86.38 d.38.1.5 136082 1y56B 382 86.53 2abqA 306 87.11 c.72.1.1 126528 1xfkA 336 88.83 c.42.1.1 115264 1k0fA 277 89.15 c.92.2.2 71974