# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	2.83e-17		
2ia2A	265	3.14e-17		
1tf1A	198	5.11e-17	d.110.2.2	106826
1mkmA	249	5.81e-17	a.4.5.33,d.110.2.2	79242,79243
2o0yA	260	1.08e-16		
1yspA	181	1.93e-16		
1td5A	202	2.48e-16	d.110.2.2	106767
2o99A	182	2.80e-16	d.110.2.2	138952
3bjnA	165	4.04e-16		
1ysqA	193	4.87e-16		
2b02A	119	27.48		
2gv5A	161	31.55		
2i6jA	161	32.10		
1z47A	355	47.89		
1flrL	219	48.29	b.1.1.1,b.1.1.2	19904,20998
1wouA	123	48.50	c.47.1.16	109471
2g3aA	152	49.32	d.108.1.1	134557
1iloA	77	49.70	c.47.1.1	66205
1v9wA	130	51.11	c.47.1.16	108453
1mjuL	219	55.09	b.1.1.1,b.1.1.2	91304,91305
1trb	320	55.20		
2uzhA	165	55.30		
1u08A	386	63.47	c.67.1.1	107543
1oxsC	353	68.19	b.40.6.3,c.37.1.12	87519,87520
1oxxK	353	68.60	b.40.6.3,c.37.1.12	93715,93716
1thxA	115	69.77	c.47.1.1	32732
1k6kA	143	73.16	a.174.1.1	77274
1nlfA	279	74.28	c.37.1.11	85850
2i7nA	360	76.04		
1t3yA	141	76.08	d.109.1.2	119141
1l2tA	235	78.24	c.37.1.12	73514
1nw2A	105	81.65	c.47.1.1	92215
1g291	372	82.13		
1ncwL	219	82.17	b.1.1.1,b.1.1.2	85557,85558
1qk8A	146	83.28	c.47.1.10	33061
3cmnA	372	85.98		
1ep8A	112	88.49	c.47.1.1	64907
2cvkA	110	89.67