# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	1.75e-17		
2ia2A	265	2.17e-17		
1tf1A	198	3.94e-17	d.110.2.2	106826
1mkmA	249	4.26e-17	a.4.5.33,d.110.2.2	79242,79243
2o0yA	260	6.50e-17		
1yspA	181	1.77e-16		
1td5A	202	1.97e-16	d.110.2.2	106767
2o99A	182	2.22e-16	d.110.2.2	138952
1ysqA	193	2.29e-16		
3bjnA	165	3.32e-16		
2i6jA	161	20.24		
2gv5A	161	35.17		
1flrL	219	37.92	b.1.1.1,b.1.1.2	19904,20998
1v9wA	130	43.89	c.47.1.16	108453
1u08A	386	44.08	c.67.1.1	107543
1z47A	355	47.67		
1iloA	77	48.52	c.47.1.1	66205
1a7j	290	48.96		
1wouA	123	53.16	c.47.1.16	109471
2qybA	181	54.66		
2b02A	119	55.51		
1mjuL	219	55.69	b.1.1.1,b.1.1.2	91304,91305
1itpA	77	60.53	d.58.3.2	66371
1oaqL	120	63.54	b.1.1.1	92708
1oxsC	353	63.57	b.40.6.3,c.37.1.12	87519,87520
1g291	372	64.28		
2g3aA	152	64.76	d.108.1.1	134557
1i7hA	111	67.86	d.15.4.1	71122
2absA	383	69.07	c.72.1.1	126534
1kllA	130	70.11	d.32.1.2	72720
2p25A	126	70.61		
1oxxK	353	74.46	b.40.6.3,c.37.1.12	93715,93716
1thxA	115	77.21	c.47.1.1	32732
1ncwL	219	78.32	b.1.1.1,b.1.1.2	85557,85558
1l2tA	235	81.21	c.37.1.12	73514
1d8yA	605	84.07	c.55.3.5,e.8.1.1	33684,42977
1nlfA	279	84.95	c.37.1.11	85850
1vhqA	232	85.07	c.23.16.2	100696
1tetL	216	85.10	b.1.1.1,b.1.1.2	19902,20996
1a4kA	217	85.93	b.1.1.1,b.1.1.2	20236,21248
1k6kA	143	87.76	a.174.1.1	77274
1ithA	141	88.18	a.1.1.2	15623
1w7lA	422	88.46	c.67.1.1	109226
2i7nA	360	88.97