# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tf1A	198	1.76e-24	d.110.2.2	106826
2ia2A	265	4.08e-24		
1mkmA	249	4.70e-24	a.4.5.33,d.110.2.2	79242,79243
2g7uA	257	1.48e-23		
1yspA	181	3.07e-23		
2o0yA	260	3.22e-23		
1td5A	202	3.92e-23	d.110.2.2	106767
2o99A	182	4.08e-23	d.110.2.2	138952
3bjnA	165	7.63e-23		
1ysqA	193	3.50e-22		
2qybA	181	7.254		
1v9wA	130	15.27	c.47.1.16	108453
1wouA	123	19.84	c.47.1.16	109471
1jj7A	260	22.41	c.37.1.12	63114
2uzhA	165	24.99		
1p0zA	131	26.53	d.110.6.1	93882
1l2tA	235	28.71	c.37.1.12	73514
1qk8A	146	28.81	c.47.1.10	33061
1oxsC	353	30.33	b.40.6.3,c.37.1.12	87519,87520
1ls6A	295	30.70	c.37.1.5	91115
2c27A	315	33.37	d.108.1.1	129659
1oxxK	353	33.84	b.40.6.3,c.37.1.12	93715,93716
1mc0A	368	35.48	d.110.2.1,d.110.2.1	78937,78938
1ykdA	398	36.73		
2j5gA	263	37.40		
2iwtA	125	37.69		
1pqnA	127	38.06	c.47.1.8	95025
1flrL	219	43.06	b.1.1.1,b.1.1.2	19904,20998
2vluA	122	43.46		
2ixeA	271	45.23		
1k6kA	143	46.71	a.174.1.1	77274
1n4qB	377	48.68	a.102.4.3	91636
1ro2A	216	48.92	d.264.1.2	97665
2f0xA	148	50.27	d.38.1.5	132673
2i6jA	161	50.81		
2yydA	345	51.11		
1ro0A	216	52.35	d.264.1.2	97664
1o8xA	146	54.30	c.47.1.10	86681
1dtdA	303	55.08	c.56.5.1	33823
2oe3A	114	56.30		
1qgvA	142	56.71	c.47.1.8	33056
1e5pA	151	58.58	b.60.1.1	59272
1ep8A	112	58.74	c.47.1.1	64907
1cv2A	296	58.76	c.69.1.8	34680
1d2rA	326	59.82	c.26.1.1	31572
1a2xA	159	60.03	a.39.1.5	17251
1nlfA	279	60.47	c.37.1.11	85850
2h5eA	529	61.45		
3c8cA	240	63.26		
2hufA	393	63.78		
1dbqA	289	64.63	c.93.1.1	35666
1nw2A	105	67.84	c.47.1.1	92215
1fb6A	105	67.99	c.47.1.1	32739
1g8yA	279	69.42	c.37.1.11	32302
2vm1A	118	69.60		
2reeA	224	73.00		
1w4xA	542	73.06	c.3.1.5,c.3.1.5	109171,109172
1rxqA	178	76.23	a.213.1.1	105118
1mjuL	219	76.74	b.1.1.1,b.1.1.2	91304,91305
1z47A	355	77.81		
1tfzA	424	78.67	d.32.1.3,d.32.1.3	106886,106887
1mvuA	114	79.24	b.1.1.1	91474
2trxA	108	79.52	c.47.1.1	32719
3cpxA	321	80.17		
2d3yA	219	82.00		
1ncwL	219	82.36	b.1.1.1,b.1.1.2	85557,85558
1uw4A	91	83.95	d.58.7.4	100071
1pvvA	315	84.36	c.78.1.1,c.78.1.1	95190,95191
1x74A	360	85.39	c.123.1.1	121771
1k0eA	453	87.35	d.161.1.1	67938
1rscI	111	87.58	d.73.1.1	118620