# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 8.38e-21 1mkmA 249 3.13e-19 a.4.5.33,d.110.2.2 79242,79243 1tf1A 198 3.88e-19 d.110.2.2 106826 1ysqA 193 1.36e-18 2o99A 182 4.28e-18 d.110.2.2 138952 1yspA 181 5.55e-18 3bjnA 165 7.32e-18 1td5A 202 8.32e-18 d.110.2.2 106767 2g7uA 257 3.83e-17 2o0yA 260 1.01e-16 1e42A 258 4.284 b.1.10.1,d.105.1.1 22316,40792 1khyA 148 5.299 a.174.1.1 77410 1l3lA 234 6.718 a.4.6.2,d.110.5.1 73541,73542 1p1xA 260 8.324 c.1.10.1 104060 1jcjA 260 8.567 c.1.10.1 66499 1nd4A 264 8.893 d.144.1.6 91815 1qfeA 252 9.825 c.1.10.1 29167 1gqnA 252 9.834 c.1.10.1 90514 1ykdA 398 11.20 2b18A 164 11.98 1mzhA 225 12.84 c.1.10.1 79698 1k6kA 143 13.32 a.174.1.1 77274 2dt5A 211 14.47 a.4.5.38,c.2.1.12 131708,131709 1qqeA 292 17.45 a.118.8.1 19210 2qdfA 335 17.63 1mumA 295 18.30 c.1.12.7 85108 1o0yA 260 23.33 c.1.10.1 80756 3bz6A 183 23.35 2a4aA 281 26.12 c.1.10.1 126150 2vacA 134 26.85 2qmlA 198 26.97 1ytaA 180 30.83 c.55.3.5 124002 2ahqA 76 32.45 1qtqA 553 33.26 b.53.1.2,c.26.1.1 26940,31579 2igiA 180 33.33 1kpgA 287 35.35 c.66.1.18 68735 1fgs 428 35.99 1ub3A 220 36.73 c.1.10.1 88395 1sdoA 203 37.18 c.52.1.21 98809 1ygsA 234 37.76 b.26.1.1 23907 1mzgA 146 39.29 d.224.1.1 79696 2q0oA 236 39.75 2v75A 104 39.98 2g30A 258 40.16 b.1.10.1,d.105.1.1 134546,134547 2r18A 139 41.05 2nr3A 183 42.68 1gtrA 553 42.89 b.53.1.2,c.26.1.1 26939,31578 2iyeA 263 43.26 1khxA 227 43.87 b.26.1.1 68631 2yskA 145 44.49 2nvaA 372 44.54 1ygs 234 45.36 1reqA 727 46.05 c.1.19.1,c.23.6.1 29620,31247 1zejA 293 47.27 1lfpA 249 50.48 e.39.1.1 73885 1r5rA 119 50.71 a.39.2.1 97104 1f5mA 180 51.28 d.110.2.1 40895 2q04A 211 53.20 3cnbA 143 53.45 1xhfA 123 54.21 c.23.1.1 122003 1t0fA 276 55.49 a.4.5.27,c.52.1.16 112195,112196 1n7kA 234 56.35 c.1.10.1 85374 1ve3A 227 56.90 c.66.1.43 120010 2hhcA 330 59.01 1zelA 298 59.53 2nn4A 72 59.85 1pt6A 213 61.97 c.62.1.1 95091 1qxoA 388 62.86 d.258.1.1 96539 1oohA 126 63.14 a.39.2.1 93383 2gykA 86 65.70 1zesA 125 66.48 c.23.1.1 124994 2ahrA 259 67.24 a.100.1.10,c.2.1.6 126775,126776 2qybA 181 67.39 1lp8A 254 67.46 d.165.1.1 91082 1ej9A 563 67.53 d.163.1.2,e.15.1.1 42172,43265 2qw6A 112 67.71 1kwmA 402 67.91 c.56.5.1,d.58.3.1 73079,73080 1ay7B 89 68.25 c.9.1.1 30836 1zd1A 284 68.31 1b3sD 90 69.01 c.9.1.1 30846 3c8nA 356 71.00 1fr2A 86 71.56 a.28.2.1 83256 1vhuA 211 72.74 c.50.1.2 100703 1u7kA 131 74.27 a.73.1.1 113087 1sd4A 126 74.49 a.4.5.39 105428 1cy9A 264 74.92 e.10.1.1 43236 2g9wA 138 75.28 1xg4A 295 76.10 1obrA 326 76.31 c.56.5.2 33828 1gg4A 452 76.95 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2h58A 330 77.35 2a0jA 149 77.93 1sfxA 109 77.98 a.4.5.50 105505 2cxaA 256 78.41 d.108.1.6 130993 3bq9A 460 79.43 1pscA 365 80.07 c.1.9.3 29058 1v6tA 255 80.33 c.6.2.5 113550 1yo5C 97 81.85 a.4.5.21 123768 2z10A 194 82.10 1cipA 353 82.67 a.66.1.1,c.37.1.8 18210,32093 1rl0A 255 83.49 d.165.1.1 111859 2glxA 332 84.06 1z85A 234 85.79 1lucA 355 87.18 c.1.16.1 29547 1nrwA 288 89.01 c.108.1.10 86128 1m4jA 142 89.97 d.109.1.2 78602