# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g7uA 257 6.40e-30 1mkmA 249 3.52e-29 a.4.5.33,d.110.2.2 79242,79243 2ia2A 265 3.73e-29 1tf1A 198 4.24e-29 d.110.2.2 106826 1yspA 181 9.12e-28 1ysqA 193 2.80e-27 2o99A 182 1.92e-26 d.110.2.2 138952 2o0yA 260 1.61e-25 3bjnA 165 1.96e-25 2j8mA 172 1.407 1yr0A 175 2.500 d.108.1.1 123905 2uzhA 165 3.426 1kllA 130 4.174 d.32.1.2 72720 1yvoA 172 5.041 d.108.1.1 124106 1gx1A 160 5.349 d.79.5.1 70675 1ii5A 233 6.162 c.94.1.1 62412 2qs8A 418 6.457 1r59O 505 6.517 c.55.1.4,c.55.1.4 111697,111698 2qdfA 335 7.111 1t0aA 159 7.922 d.79.5.1 112192 1t94A 459 8.669 d.240.1.1,e.8.1.7 106701,106702 2uv0E 175 8.714 3b6nA 187 8.963 1cttA 294 9.291 c.97.1.1,c.97.1.1 36022,36023 2d4wA 504 9.457 2basA 431 9.810 c.1.33.1,d.110.6.2 128244,128245 1jx4A 352 10.98 d.240.1.1,e.8.1.7 90378,90379 3claA 213 12.90 c.43.1.1 32610 1ub0A 258 13.08 c.72.1.2 88394 2idlA 117 14.32 2zf5O 497 14.69 2dri 271 15.48 1fa8A 135 15.91 d.32.1.1 38486 1iv3A 152 16.97 d.79.5.1 76828 1xvwA 160 17.30 c.47.1.10 122387 2a4xA 138 17.65 d.32.1.2 126166 2p35A 259 19.30 1k6kA 143 19.38 a.174.1.1 77274 1nlfA 279 20.31 c.37.1.11 85850 2rjoA 332 21.57 2qmoA 220 21.96 2odiA 238 22.38 2qq9A 226 23.28 3bqxA 150 24.32 1xvqA 175 24.41 c.47.1.10 116094 2rbbA 141 25.14 1f9zA 135 25.69 d.32.1.1 38484 2eo0A 147 25.86 2ge3A 170 27.36 d.108.1.1 135044 2fb2A 340 27.47 3ciwA 348 28.13 1v2dA 381 28.39 c.67.1.1 108281 2ha8A 184 29.18 2e0qA 104 29.48 1r9cA 139 30.64 d.32.1.2 97255 2i9dA 217 32.90 1zzoA 136 32.95 c.47.1.10 125913 2depA 356 33.09 1b5pA 385 33.41 c.67.1.1 90403 1bu6O 501 33.50 c.55.1.4,c.55.1.4 33499,33500 1avsA 90 33.59 a.39.1.5 17226 1dpbA 243 34.52 c.43.1.1 32618 2yxzA 311 35.04 1mpyA 307 35.58 d.32.1.3,d.32.1.3 38508,38509 2r8cA 426 36.33 2nooA 502 36.89 2pkfA 334 37.08 2p3rA 510 39.29 c.55.1.4,c.55.1.4 139471,139472 1mc0A 368 39.47 d.110.2.1,d.110.2.1 78937,78938 2r6uA 148 41.30 1lpjA 133 43.67 b.60.1.2 78123 2cxaA 256 47.26 d.108.1.6 130993 2gb3A 409 47.52 c.67.1.1 134903 1topA 162 49.01 a.39.1.5 17223 1vicA 262 49.79 c.68.1.13 100756 1ve3A 227 52.86 c.66.1.43 120010 3brsA 289 53.64 2yzhA 171 53.64 1tkjA 284 53.98 c.56.5.4 119296 1a8yA 367 54.44 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1qwjA 229 57.27 c.68.1.13 96478 3b5vA 248 59.48 3cla 213 59.63 1kngA 156 62.82 c.47.1.10 72777 3b59A 310 64.28 2jejA 358 64.92 d.240.1.1,e.8.1.7 138284,138285 1sqiA 393 65.35 d.32.1.3,d.32.1.3 105914,105915 1o4sA 389 65.89 c.67.1.1 86620 1rkdA 309 67.56 c.72.1.1 34928 1tv8A 340 68.13 c.1.28.3 107352 1dpeA 507 69.36 c.94.1.1 35799 2obfA 289 69.89 1xqaA 113 70.15 d.32.1.2 115837 1z41A 338 74.13 c.1.4.1 124421 1lkdA 297 74.17 d.32.1.3,d.32.1.3 78059,78060 1g291 372 76.13 2v3uA 265 76.38 1iloA 77 76.59 c.47.1.1 66205 2gv5A 161 77.14 2douA 376 79.33 1y6vA 449 79.66 c.76.1.1 122674 1f1xA 322 80.63 d.32.1.3,d.32.1.3 83208,83209 1bf6A 291 81.63 c.1.9.3 29065 3cneA 175 81.89 2hgcA 102 82.53 1vk1A 242 83.03 d.268.1.2 108634 1t2dA 322 83.19 c.2.1.5,d.162.1.1 99084,99085 2cztA 167 85.47 1v5iB 76 86.43 2fe3A 145 86.97 1w79A 489 87.46 e.3.1.3 120680 2nq2C 253 88.70 1y56A 493 88.71