# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	3.97e-20		
2ia2A	265	2.05e-19		
1tf1A	198	4.29e-19	d.110.2.2	106826
1mkmA	249	5.30e-19	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	1.73e-18		
1ysqA	193	5.09e-18		
3bjnA	165	1.66e-17		
2o0yA	260	1.97e-17		
2o99A	182	2.49e-17	d.110.2.2	138952
2qq9A	226	0.06419		
2uzhA	165	2.345		
1t0aA	159	5.307	d.79.5.1	112192
1gx1A	160	5.325	d.79.5.1	70675
3claA	213	6.310	c.43.1.1	32610
1ub0A	258	7.186	c.72.1.2	88394
1yr0A	175	8.522	d.108.1.1	123905
2basA	431	11.59	c.1.33.1,d.110.6.2	128244,128245
1k6kA	143	11.79	a.174.1.1	77274
2depA	356	12.40		
2zf5O	497	12.72		
2d4wA	504	12.76		
1iv3A	152	13.37	d.79.5.1	76828
3b6nA	187	14.09		
1o4sA	389	14.76	c.67.1.1	86620
1kllA	130	15.15	d.32.1.2	72720
1b5pA	385	20.04	c.67.1.1	90403
1v2dA	381	20.77	c.67.1.1	108281
2qs8A	418	21.32		
1ii5A	233	22.53	c.94.1.1	62412
2idlA	117	22.94		
3ciwA	348	23.85		
2qmoA	220	24.11		
2uv0E	175	28.43		
2eo0A	147	33.85		
1zzoA	136	40.74	c.47.1.10	125913
2cxaA	256	41.30	d.108.1.6	130993
2douA	376	42.80		
1mc0A	368	44.23	d.110.2.1,d.110.2.1	78937,78938
2rbbA	141	44.81		
3bgvA	313	45.33		
2p35A	259	45.78		
2z14A	133	48.65		
2ge3A	170	49.03	d.108.1.1	135044
1s7kA	182	52.14	d.108.1.1	118878
2ez2A	456	53.90		
1xk7A	408	54.90	c.123.1.1	122071
2i9dA	217	55.29		
1x52A	124	57.31		
1vicA	262	59.14	c.68.1.13	100756
2gb3A	409	61.25	c.67.1.1	134903
2p3rA	510	63.66	c.55.1.4,c.55.1.4	139471,139472
1nlfA	279	65.20	c.37.1.11	85850
2e0qA	104	66.57		
1mpyA	307	73.80	d.32.1.3,d.32.1.3	38508,38509
2cy2A	174	78.25	d.108.1.1	131016
2j8mA	172	78.60		
2ha8A	184	80.57		
2r6oA	294	80.58		
1np3A	338	83.94	a.100.1.2,c.2.1.6	85946,85947
2a4xA	138	84.28	d.32.1.2	126166
1y6vA	449	85.17	c.76.1.1	122674
2jfkA	433	85.28		
2obfA	289	85.73		
1twuA	139	85.95	d.32.1.8	107413
2rjoA	332	87.27		
3bqxA	150	88.42		
2v8fA	140	88.70