# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	2.73e-21		
2ia2A	265	1.06e-20		
1tf1A	198	3.74e-20	d.110.2.2	106826
1mkmA	249	4.37e-20	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	1.46e-19		
1ysqA	193	3.91e-19		
3bjnA	165	1.83e-18		
2o0yA	260	1.99e-18		
2o99A	182	3.27e-18	d.110.2.2	138952
2qq9A	226	0.05705		
2uzhA	165	1.946		
1gx1A	160	4.519	d.79.5.1	70675
1yr0A	175	4.776	d.108.1.1	123905
1t0aA	159	5.042	d.79.5.1	112192
2d4wA	504	7.593		
1ub0A	258	7.722	c.72.1.2	88394
2zf5O	497	8.045		
3claA	213	8.448	c.43.1.1	32610
1k6kA	143	10.96	a.174.1.1	77274
2depA	356	11.29		
2basA	431	11.90	c.1.33.1,d.110.6.2	128244,128245
1kllA	130	12.75	d.32.1.2	72720
1iv3A	152	12.77	d.79.5.1	76828
3b6nA	187	14.39		
1ii5A	233	16.69	c.94.1.1	62412
2qs8A	418	16.75		
1o4sA	389	18.36	c.67.1.1	86620
3ciwA	348	22.88		
1v2dA	381	24.64	c.67.1.1	108281
1zzoA	136	26.68	c.47.1.10	125913
2idlA	117	28.02		
1b5pA	385	30.29	c.67.1.1	90403
2j8mA	172	30.85		
2qmoA	220	30.86		
2cxaA	256	32.64	d.108.1.6	130993
2i9dA	217	32.98		
2eo0A	147	33.71		
2uv0E	175	35.46		
1s7kA	182	37.05	d.108.1.1	118878
1mc0A	368	37.49	d.110.2.1,d.110.2.1	78937,78938
3bgvA	313	44.62		
2p3rA	510	46.29	c.55.1.4,c.55.1.4	139471,139472
1nlfA	279	46.81	c.37.1.11	85850
2p35A	259	47.32		
1vicA	262	49.15	c.68.1.13	100756
2ez2A	456	49.23		
2rbbA	141	51.26		
2e0qA	104	53.60		
2ge3A	170	54.28	d.108.1.1	135044
2a4xA	138	54.34	d.32.1.2	126166
2obfA	289	55.30		
2douA	376	55.75		
1jx4A	352	56.93	d.240.1.1,e.8.1.7	90378,90379
2z14A	133	63.87		
1np3A	338	67.31	a.100.1.2,c.2.1.6	85946,85947
1xk7A	408	68.64	c.123.1.1	122071
1mpyA	307	68.93	d.32.1.3,d.32.1.3	38508,38509
1twuA	139	69.27	d.32.1.8	107413
1dpeA	507	70.06	c.94.1.1	35799
2h98A	313	70.71		
1x52A	124	73.03		
2cy2A	174	74.34	d.108.1.1	131016
2ozhA	142	76.00		
2r8cA	426	79.69		
2ft0A	235	80.05		
1avsA	90	80.14	a.39.1.5	17226
2gi3A	476	81.72	c.117.1.1	135220
1bu6O	501	82.10	c.55.1.4,c.55.1.4	33499,33500
2h9bA	312	83.41		
2v3uA	265	83.78		
3bqxA	150	86.54		
1hd7A	318	87.24	d.151.1.1	41780