# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tf1A 198 3.38e-24 d.110.2.2 106826 2g7uA 257 4.37e-24 2ia2A 265 5.83e-24 1mkmA 249 2.12e-23 a.4.5.33,d.110.2.2 79242,79243 1ysqA 193 7.18e-23 1yspA 181 8.84e-23 2o99A 182 3.54e-22 d.110.2.2 138952 3bjnA 165 9.74e-22 2o0yA 260 3.10e-21 2qq9A 226 1.530 2p35A 259 3.582 1mc0A 368 4.157 d.110.2.1,d.110.2.1 78937,78938 1k6kA 143 5.693 a.174.1.1 77274 2odiA 238 6.248 2uzhA 165 6.383 1t0aA 159 7.161 d.79.5.1 112192 1gx1A 160 9.459 d.79.5.1 70675 2e0qA 104 9.643 2okjA 504 9.698 2vluA 122 11.03 1oxxK 353 13.02 b.40.6.3,c.37.1.12 93715,93716 1r26A 125 14.41 c.47.1.1 96847 2ywiA 196 16.27 2ez2A 456 18.25 1sknP 92 20.64 a.37.1.1 17127 2yzhA 171 21.61 2basA 431 22.37 c.1.33.1,d.110.6.2 128244,128245 2oe3A 114 25.12 2uv0E 175 25.65 1ggzA 148 26.08 a.39.1.5 70176 1iv3A 152 26.17 d.79.5.1 76828 2iwtA 125 26.38 1jx4A 352 27.03 d.240.1.1,e.8.1.7 90378,90379 1i6lA 328 27.77 c.26.1.1 66041 1kllA 130 31.72 d.32.1.2 72720 1nlfA 279 33.87 c.37.1.11 85850 2qmoA 220 33.91 2idlA 117 34.31 2i4aA 107 34.38 1erw 105 34.71 1erv 105 35.22 1hynP 379 35.66 d.112.1.2 61408 2trxA 108 37.92 c.47.1.1 32719 2vm1A 118 40.74 1thxA 115 41.33 c.47.1.1 32732 1t94A 459 42.12 d.240.1.1,e.8.1.7 106701,106702 2yxzA 311 42.36 2qe6A 274 42.76 2fb2A 340 43.91 2depA 356 45.37 1x52A 124 45.80 1ii5A 233 47.11 c.94.1.1 62412 2cxaA 256 47.89 d.108.1.6 130993 1gh2A 107 51.41 c.47.1.1 60515 1k75A 434 52.31 c.82.1.2 68253 3boeA 210 54.03 2heuA 401 54.14 1yvoA 172 54.29 d.108.1.1 124106 2qs8A 418 55.66 2zf5O 497 56.33 2f51A 118 56.44 1fb6A 105 56.61 c.47.1.1 32739 1lfpA 249 58.68 e.39.1.1 73885 1exrA 148 59.37 a.39.1.5 17299 1w7jB 151 59.52 a.39.1.5 120690 3ciwA 348 59.79 2obfA 289 60.62 1s6cA 183 61.16 a.39.1.5 98594 2i9dA 217 64.08 2jejA 358 66.00 d.240.1.1,e.8.1.7 138284,138285 1yr0A 175 66.56 d.108.1.1 123905 2jc5A 259 67.09 2ha8A 184 67.11 2cyyA 151 67.38 a.4.5.32,d.58.4.2 131028,131029 1tv8A 340 67.40 c.1.28.3 107352 1xtyA 120 68.24 2gv5A 161 68.48 1kngA 156 70.34 c.47.1.10 72777 2i5fA 109 70.37 2b5eA 504 72.09 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1faaA 124 72.23 c.47.1.1 32738 2cfxA 144 72.54 a.4.5.32,d.58.4.2 130395,130396 2d4wA 504 72.76 1xk7A 408 73.44 c.123.1.1 122071 1uliA 460 75.58 b.33.1.2,d.129.3.3 107921,107922 2hgcA 102 75.77 2i6jA 161 75.95 2ifqA 105 78.56 c.47.1.1 137343 1qtqA 553 79.89 b.53.1.2,c.26.1.1 26940,31579 1jpkA 388 81.80 c.1.22.1 67026 2f7bA 233 82.34 2d4gA 171 83.43 2obhA 143 84.49 3claA 213 84.80 c.43.1.1 32610 1a19A 90 85.46 c.9.1.1 30831 1wy9A 147 89.47