# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	9.81e-25		
1tf1A	198	3.34e-24	d.110.2.2	106826
2ia2A	265	6.06e-24		
1mkmA	249	1.38e-23	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	5.47e-23		
1ysqA	193	1.51e-22		
2o99A	182	4.44e-22	d.110.2.2	138952
2o0yA	260	8.40e-22		
3bjnA	165	8.42e-22		
2qq9A	226	0.4776		
2uzhA	165	0.8853		
1yr0A	175	1.702	d.108.1.1	123905
1gx1A	160	3.117	d.79.5.1	70675
1t0aA	159	3.563	d.79.5.1	112192
3claA	213	3.641	c.43.1.1	32610
2j8mA	172	4.936		
1k6kA	143	6.174	a.174.1.1	77274
1s7kA	182	7.100	d.108.1.1	118878
1ub0A	258	7.261	c.72.1.2	88394
2basA	431	7.649	c.1.33.1,d.110.6.2	128244,128245
2eo0A	147	7.901		
2d4wA	504	8.028		
3b6nA	187	8.121		
1iv3A	152	10.26	d.79.5.1	76828
1ii5A	233	10.82	c.94.1.1	62412
1kllA	130	11.04	d.32.1.2	72720
2qs8A	418	11.06		
2p35A	259	15.59		
2zf5O	497	15.66		
2idlA	117	15.95		
2uv0E	175	18.32		
2r8cA	426	22.50		
1bu6O	501	26.02	c.55.1.4,c.55.1.4	33499,33500
2depA	356	26.97		
2qmoA	220	28.11		
1z41A	338	28.28	c.1.4.1	124421
2e0qA	104	28.60		
2p3rA	510	34.12	c.55.1.4,c.55.1.4	139471,139472
2ge3A	170	34.34	d.108.1.1	135044
2cy2A	174	34.85	d.108.1.1	131016
1zzoA	136	34.95	c.47.1.10	125913
1mpyA	307	34.97	d.32.1.3,d.32.1.3	38508,38509
2odiA	238	36.81		
3ciwA	348	38.77		
2cxaA	256	39.16	d.108.1.6	130993
1mc0A	368	40.09	d.110.2.1,d.110.2.1	78937,78938
2i9dA	217	40.45		
2ha8A	184	41.21		
3bqxA	150	42.09		
2a4xA	138	42.33	d.32.1.2	126166
1xvqA	175	43.90	c.47.1.10	116094
1cttA	294	45.32	c.97.1.1,c.97.1.1	36022,36023
1yvoA	172	47.80	d.108.1.1	124106
1nlfA	279	54.23	c.37.1.11	85850
1v2dA	381	55.01	c.67.1.1	108281
2pyyA	228	56.18		
2ft0A	235	56.37		
2fb2A	340	57.54		
1hd7A	318	57.77	d.151.1.1	41780
1dpeA	507	58.60	c.94.1.1	35799
1twuA	139	59.06	d.32.1.8	107413
1vicA	262	61.71	c.68.1.13	100756
1a19A	90	63.52	c.9.1.1	30831
1ps9A	671	63.90	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
1np3A	338	64.73	a.100.1.2,c.2.1.6	85946,85947
2pkfA	334	68.28		
1uliA	460	71.11	b.33.1.2,d.129.3.3	107921,107922
2qcfA	260	73.07		
2v3uA	265	75.64		
1lkdA	297	75.77	d.32.1.3,d.32.1.3	78059,78060
2rbbA	141	76.16		
1u9cA	224	76.95	c.23.16.2	113234
2v8fA	140	76.98		
2v0uA	146	77.40		
1sqiA	393	78.84	d.32.1.3,d.32.1.3	105914,105915
1faaA	124	78.99	c.47.1.1	32738
2ozhA	142	80.17		
1w7jB	151	80.27	a.39.1.5	120690
2i6cA	160	82.40	d.108.1.1	137095
1dpbA	243	84.32	c.43.1.1	32618
1u4bA	580	86.54	c.55.3.5,e.8.1.1	107664,107665
2hgcA	102	86.64		
2r6oA	294	88.73		
1k9uA	78	89.98	a.39.1.10	84348