# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 2.17e-21 2g7uA 257 1.04e-20 1tf1A 198 2.03e-20 d.110.2.2 106826 1mkmA 249 5.97e-20 a.4.5.33,d.110.2.2 79242,79243 1yspA 181 1.55e-19 1ysqA 193 2.52e-19 2o99A 182 6.03e-19 d.110.2.2 138952 3bjnA 165 1.36e-18 2o0yA 260 2.47e-18 2qq9A 226 0.3764 2basA 431 0.7775 c.1.33.1,d.110.6.2 128244,128245 1gx1A 160 1.538 d.79.5.1 70675 2uzhA 165 1.688 2cxaA 256 1.732 d.108.1.6 130993 1t0aA 159 2.911 d.79.5.1 112192 1yr0A 175 3.580 d.108.1.1 123905 2o0bA 450 3.865 2j8mA 172 4.357 1v2dA 381 4.682 c.67.1.1 108281 7aatA 401 6.032 c.67.1.1 34250 2ha8A 184 6.794 1j31A 262 7.157 d.160.1.2 90808 1k6kA 143 7.294 a.174.1.1 77274 1z41A 338 7.384 c.1.4.1 124421 1jx4A 352 7.449 d.240.1.1,e.8.1.7 90378,90379 2oolA 337 7.975 2jejA 358 8.112 d.240.1.1,e.8.1.7 138284,138285 2d4wA 504 8.744 3claA 213 9.010 c.43.1.1 32610 1twuA 139 9.635 d.32.1.8 107413 3b6nA 187 11.18 1s7kA 182 11.24 d.108.1.1 118878 1xvwA 160 11.62 c.47.1.10 122387 1k75A 434 11.63 c.82.1.2 68253 2douA 376 15.04 1bw0A 416 15.66 c.67.1.1 34385 2r2nA 425 16.97 1arsA 396 19.89 c.67.1.1 34287 1vr5A 547 20.04 c.94.1.1 120437 2gb3A 409 20.23 c.67.1.1 134903 2rebA 352 20.46 c.37.1.11,d.48.1.1 32282,38767 1kllA 130 20.98 d.32.1.2 72720 2ip1A 432 21.04 2obfA 289 22.01 3bgvA 313 23.20 1p5dX 463 25.01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2hp1A 432 26.37 1j32A 388 27.02 c.67.1.1 77067 2r8cA 426 27.31 2uv0E 175 27.47 1u4bA 580 27.99 c.55.3.5,e.8.1.1 107664,107665 2dx6A 159 28.58 2p35A 259 28.90 1ars 396 29.69 2dtvA 397 31.09 1yaaA 412 31.28 c.67.1.1 34280 1yvoA 172 31.42 d.108.1.1 124106 2v3uA 265 32.92 2ge3A 170 33.29 d.108.1.1 135044 1ajsA 412 34.70 c.67.1.1 34276 1ub0A 258 35.13 c.72.1.2 88394 1t94A 459 35.30 d.240.1.1,e.8.1.7 106701,106702 1iv3A 152 36.28 d.79.5.1 76828 2ywnA 157 36.57 1nowA 507 36.86 c.1.8.6,d.92.2.1 85936,85937 1ii5A 233 37.62 c.94.1.1 62412 1lldA 319 37.73 c.2.1.5,d.162.1.1 30177,42144 1mpyA 307 38.10 d.32.1.3,d.32.1.3 38508,38509 2qmoA 220 38.16 2vkhA 546 38.35 1vicA 262 38.71 c.68.1.13 100756 2fcwA 109 40.06 a.13.1.1 133288 2qdfA 335 41.95 2r6uA 148 42.22 2ft0A 235 45.15 2i0kA 561 45.29 2puzA 419 46.15 1alvA 173 46.21 a.39.1.8 17370 2eiyA 308 46.75 2cy2A 174 47.65 d.108.1.1 131016 1lkdA 297 48.72 d.32.1.3,d.32.1.3 78059,78060 2v9yA 334 50.42 1mc0A 368 53.78 d.110.2.1,d.110.2.1 78937,78938 2yxzA 311 54.25 1hn0A 1021 54.99 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2dg6A 222 56.26 1wy9A 147 56.64 2idlA 117 58.97 2p11A 231 61.42 1ezfA 340 62.44 a.128.1.2 19440 2okjA 504 63.33 1zy7A 403 64.00 1avsA 90 64.25 a.39.1.5 17226 2pajA 492 64.55 2cg4A 152 65.19 a.4.5.32,d.58.4.2 130417,130418 1gpmA 525 65.78 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 3bdzA 397 66.10 2r85A 334 67.66 1e5kA 201 69.81 c.68.1.8 34578 2a4xA 138 71.38 d.32.1.2 126166 1u3dA 509 72.03 a.99.1.1,c.28.1.1 107638,107639 1dpbA 243 72.45 c.43.1.1 32618 2cy8A 453 72.89 2cstA 411 73.10 c.67.1.1 34273 1w63A 618 74.61 i.23.1.1 109192 1ep3B 262 75.28 b.43.4.2,c.25.1.3 25664,31554 1jc4A 148 76.91 d.32.1.4 62863 1u08A 386 78.44 c.67.1.1 107543 2ghsA 326 79.04 b.68.6.1 135209 2qs8A 418 79.15 1wstA 417 79.28 c.67.1.1 121244 1y5iA 1246 80.24 b.52.2.2,c.81.1.1 122639,122640 2g1iA 563 80.79 2q7dA 346 81.01 2eh6A 375 81.21 1byiA 224 81.55 c.37.1.10 32199 1sc6A 404 82.16 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2fncA 381 82.67 2ghaA 382 84.66 2e0qA 104 84.75 2ordA 397 85.17 1tv8A 340 85.25 c.1.28.3 107352 2uvlA 96 86.13 2av4A 162 86.59 1y23A 145 87.09 d.13.1.1 116394 2jc5A 259 89.34